>input_sequence_60359
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----------------------------------------------------------------------------ATGT
CTGGAATGTCATCTGATGATGCAAGTGCTGAAGTGAGGCCTGAAGGAGAAGTTTCTGGTGAAAAGGTAGAAGAAACTCAA
GATCAGAATGAAGGCAGTGGCATGCCCTCGCCACAGGAGGAGGTACTGTCTTTTCCTGGTACCCTTTCTT-GGGGGTGGT
CTTGGCCTCTGGGGTGTATATTATTCATGTTATCTTTGTTCCAA------------------------------ACTTGT
ATGGGTACTCACAGGAGGCAGCAATCAAGAAAAAATATGGAGGAAAAATGCCCAAAAAGTCATCACTTATATCAAAGGTC
AATGCCGTTGTCTTATAATGTCTTCATTTCCCTTTCAGATTAAATTATGC--AACCTTTATATAAAGTAACACAGGTGTA
TAATTAA--CTTTTAGTTCAAATTAAAATGGTATAACC--TCAATTTGAAATATCAGGACCATGAGCGGGCATTCTTTGA
TTCTGCTGATTGGGCTTTAGGAAAGGTAAGCCTGGAATCTTTTGAAAAGCTAATCTAGTGTGATATCTACAACTCAAAGA
AACTAAATAAGAAATGCAATTGTAACAGTTTTACTTCTTCGTTTGTTTGCTGCAGCAAGGTGGAAGTCCCAACAAGCCTA
AAGGACCCCTTGAAGCCCTTCGACCAAAACTACAGGTATCC--------ATACTAATGCCCATTAGATGCAAACTTCAGC
TTATGCTTTCAGTATTCTGTTTTTTACTTTTTAGTATAATAAG---ATGTATAGTTGAATGATCTGTGCTCCTTATACTG
TAAA-ATAAGTGGATATCCTGATCATGCAGCT-----CTTAGCTCTACAAAGTATGCTGTCCCATTCTCATTGCTTGAAG
CTTGACAACATGTCTTTCATTACTAAAGATGGCAATGTTGAAGTCAACTTGCAATGATATGTTTTGCCAAGTTCATCTCT
TCACTCAATTAAAACAAAAGTTCATCTCTTCACTTGTGTTTCCTGACCTACTTTCAGCCTACTCAACAAAATGCTCGTGC
CCGCCGA--------------------------------------TCTGCGCATCCTAAGCATCTAAGTCCTTGTATTTT
TGTGTTCAATGTAGTCCCAGTCTCACACATCATTATC----------------------------TTGCCTGCCGAGGAG
CTGACCCAGAATGATGATCCAACTTAA-----------------------------------------------------
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>chr3B_1_TraesCS3B01G270000
TATCAAGATCAGCGTAGTACTTATTGAGATGC--ATGCATATTCTTTCCTAAGCTGGTTCAATTGTAAGGGGCTCTGGTT
TAGTTGTATGGAACTTCTTTCCTAAAAAA--TTTATTGTTCTTTAACGTCATAAATAACCGCTCTGGTTTTTTTTAGGGG
AAAACAAATAACTTCTCTGTTTACCTGTGTGCTAACTGATTTTGTGTATAATTCAAATTTATGGCCCTCTTCTTTCATAC
TCCCTCTGTCCCAAAATTCTTGTCTTAAATTTGTCTACATACGGATGTATGAAGTCGCGTTTTAGTGTTAGATACATCCG
TATCTAGACAAATGTAAGACAAGAATTTTGGGACGGAGGGAGTATAATTAATCTATTGTTGTATACCATCATAACCTGTT
AACCTATGCCTACACATATAGGTCAGCTAATTCTGCAGGACATGGAATTGTTAGTTTTCTGAATATTTGGGGGTTTTCTC
TTTTTCTCTGAGTAATGTGGGAATTTGTAACGCGAAGTAGGTGCCTTGAATTCCATTTGCTGTTGATGATAGATATATAG
TGCAAATGCTGCAATTCCCTTATCTGAATTAGGATTTAGGACAAAGCATCAACAAGGTGTGAACCATATAAGCTGTTTGG
GCCTTGCAGTAACAATGAAGGCGTGAAAGTTTGAAAGAATATGACGCATCGACTTTGCTCGTAAAACAGATATGTTCAGA
CTTTTTTTTTTCCGATAAAGAGATATGTTCAGACTTACGCGGGTGGATCTTAAGCTGCTTTTGACTAAGTGTATTATTAA
GCCATTTGATCTGATCAGTTTGCTGTGTGCATTTGAAATTCCCACCAACATAGCACAATAAATATTCATGGTGACGTATG
AAGACACTTCT---------------------------------------------------------------------
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-------------------------------------------ATGTTCTCTCCCTTTTGTTCATATGTTGTCTACTGTA
AACAATTTAGGTTTGTACCATGAATGCGGATTATAATTCACAAAATTTAACTCCTCTCTGGCAACTTAATTTCACTATGT
CTGGAATGTCATCTGATGATGCAAGTGCTGAAGTGAGGCCTGAAGGAGAAGTTTCTGGTGAAAAGGTAGAAGAAACTCAA
GATCAGAATGAAGGCAGTGGCATGCCCTCGCCACAGGAGGAGGTACTGTCTTTTCCTGGTACCCTTTCTT-GGGGGTGGT
CTTGGCCTCTGGGGTGTATATTATTCATGTTATCTTTGTTCCAA------------------------------ACTTGT
ATGGGTACTCACAGGAGGCAGCAATCAAGAAAAAATATGGAGGAAAAATGCCCAAAAAGTCATCACTTATATCAAAGGTC
AATGCCGTTGTCTTATAATGTCTTCATTTCCCTTTCAGATTAAATTATGC--AACCTTTATATAAAGTAACACAGGTGTA
TAATTAA--CTTTTAGTTCAAATTAAAATGGTATAACC--TCAATTTGAAATATCAGGACCATGAGCGGGCATTCTTTGA
TTCTGCTGATTGGGCTTTAGGAAAGGTAAGCCTGGAATCTTTTGAAAAGCTAATCTAGTGTGATATCTACAACTCAAAGA
AACTAAATAAGAAATGCAATTGTAACAGTTTTACTTCTTCGTTTGTTTGCTGCAGCAAGGTGGAAGTCCCAACAAGCCTA
AAGGACCCCTTGAAGCCCTTCGACCAAAACTACAGGTATCC--------ATACTAATGCCCATTAGATGCAAACTTCAGC
TTATGCTTTCAGTATTCTGTTTTTTACTTTTTAGTATAATAAG---ATGTATAGTTGAATGATCTGTGCTCCTTATACTG
TAAA-ATAAGTGGATATCCTGATCATGCAGCT-----CTTAGCTCTACAAAGTATGCTGTCCCATTCTCATTGCTTGAAG
CTTGACAACATGTCTTTCATTACTAAAGATGGCAATGTTGAAGTCAACTTGCAATGATATGTTTTGCCAAGTTCATCTCT
TCACTCAATTAAAACAAAAGTTCATCTCTTCACTTGTGTTTCCTGACCTACTTTCAGCCTACTCAACAAAATGCTCGTGC
CCGCCGA--------------------------------------TCTGCGCATCCTAAGCATCTAAGTCCTTGTATTTT
TGTGTTCAATGTAGTCCCAGTCTCACACATCATTATC----------------------------TTGCCTGCCGAGGAG
CTGACCCAGAATGATGATCCAACTTAAGGCAAGAACAAGGAATAAGCATAATATGCATCGTGCTTTTTATA-GGGAAAGT
CACGGTTCTGCTGTCATCATGCCAAAACTGTTGCCTTGTTAAATAATTAGCACCGGTGCTTATATTATGCCTGAGGTTGA
GCTCTGCAGTTTTAGCTGTGGCATATCTGGCTTCTTCCACATTCAGCTATGCCTGAACCAGCTAGGAATGAACATTTCAT
GATGGTGGTGTTGTAGTGCCGGATGTGTAAGAAG-AAATAATAACAATGGAACTTCATATCTTAACAACACTTTCAAGCA
ACTGTGACTTGTGCTGATTTATACCTTTTTTTTGCGGGGTGCTGATTTATACCTAATGGGCCAATATATATAACATCATG
TCTAAACTGTGCAGCCCCAAGATT-AAAATAATGTAGATACCAACTCCCACAAAATGGTAATTGAAAGCCTTCACAAACC
GGTGTTCTTTAGCTTTTCACACACGACTTGGTTTGGAGTTGGAGGTGTTGAGACCGAAAAGAATATAAAGATAGGTACAA
TGATAATGGACAGTAAGTACATTAGTGAACACAGAATAAGCCTCAATCATGCGGACCATGTCCAAAACTTGTGGAGAGGT
GTTGTGTTAGCAATCTCACCGGGACATTGGCAATTGCACAAAAGACTTAATTGGTTAAGCAACTCAGGGAGAAACATGTT
AGCCTGGCTAGAGTTTACAGCATTATCGGGAATTTCTTTGGGACCCTAGAGAATGCGCACCAAACGATCGCTTAAGACAG
TATGCAGC-AACCTAAGCCGTGAACAATCAGAGTTCACATATATCGTGCAAGTTAGTGATGAAAGCCTAAGACACTATGC
TACGAAGACAACGGACATCTCTGATGACATGAGGGCTGCTGATCCAGTGTTACATACAGCGTGAAAGTTGATGCTGAAAG
CAAAATAAAGATGCTCATCTGGACTAAGGTGCGGCCAGGTTGATGTCAACTTGTAAAGGACTGCAGGGTAG
>chr3A_14
-------------GTAATGCTTATTGAGATGCATATGCCTCTTCTTTCCTAATCTGGTTCAGTTGTTAGTGGCTCTGGTT
CAGCTGTATGGACCTTCTCTCCTAAATTTATTTTATTGTTCTTTAACGTCATAAATAACCTCTCTGTTTTTTA-----GG
AAAATAAATAACCTCTCTGTTTACCTGTGTGCTAACTGATTTTGTGTCTAAATCAAATTTATGGCACTCTTCTC------
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--------------------TGCTGTGTGCATTTCAAATTCCCACCAACATAGCACAAGAAATATTCATGGTGACGTATG
AAGGCATACCTGTGCTACTTATTCAAATGTTTATTTCTCCGTGTCTCTGATTAAGTGGATAACAACCTTGCTGTTGACAA
ACCATAGGCCAACATTTGGTTTTCAGTCAGAAAAAGTACTGAGCCAGGTAGGCATGCCGCCCTCCCATATAACATAAGAA
ATCAGTTTTAATCCCCCTTTTCATTTACATTGATATTGACATGGCATAAAGGAAATGAAGCATCTGATCTGTATTCTGGT
TCTTGTTCTGAGAAAACACAAACAACTTCATTGAAAATCTGAAATGTTTTGTCCCTTTTGTTCATATGTTATCTACTGTA
-----------------CCATGAATGCGGATTATAATTCACGAAATTTAACTCCTCTCTGGCAGCTTAATTTCACTATGT
CTGGAATGTCATCTGATGATGCAAGTGCTGAAGTGAGGCTTGAAGGAGAAGTTTCTGGTGAAAAGGTACAAGAAACTCAA
GATCAGAATGAAGGCAGTGGCATGCCCTCGCCACAAGAGGAGGTACTGTCTTTTCCCGGTACCATTTTTTTGGGGGTGAT
CTTGGCCTCTTGGGTGTATATTATTCATGTTATCTTCGTTCCAA------------------------------GCTTGT
ATGGGTACTCACAGGAGGCAGCAATCAAGAAAAAATATGGAGGAAAAATACCCAAAAAGTCACCACTTATATCGAAGGTC
AATGCCGTTGTCTTATAATGTCTTCATTTCCCTTTCAAATCAAATTATGC--AACCTTTATATAAAGTAGCATAGGTGTA
GAATTAA--TTTTATTTT--AAATTAAACGGTATAACC--ATAATTTGAAATATCAGGACCATGAGCGGGCATTCTTTGA
TTCTGCTGATTGGGCTTTAGGAAAGGTAAGCCTTAAATCTTTTGAAAAGCTAATCTAGTGTGATATCTACATCTCAAAAA
ACCTAAAAAGGAAATGCATTTATAACAGTTTTACTTCTTGGTTTGTTTGCTGCAGCAAGGTGGAAATCCCAACAAGCCCA
AAGGGCCCCTTGAAGCTCTTCGACCAAAACTCCAGGTATCA--------ATACTAATGCTCATCAGATGCAAACTTCAGC
TTATGTTTTCAGTATTCTGTTTTTACTCTTTAGT----ATGAG---ATGTATAGTTGAATTATCTACGCTCCTTATACTC
TAAA-ATAAGTGGATGTTCTGATCACGCAGTT-TTAGCTTAGCTCTACAAAGTATGCTGTCCCATTCCCATTGCTTGAAG
CTTGACAACAAGTCTTTCATTACTAAAGAT--CAATGTTGAAGTCAACTTGCAATACCATGCTGTGCC------------
-----------------AAGTTCATCTCTTCACTTGTGTTTCCTGATCTACTTTCAGCCTACTCAACAAAATGCTCGTGC
CCGCCGATCTTCCTATGCATCTGCAGACAATGATGGTACTCCTTATCTGCACATCCTAAGCAGACAACTCCTTGTATTTG
A-TGGTCAATGCAGTCCCAGTCTCACACAACATTGTCTTTTATTTTTCCTGTAGAGAGTTTGAGTTTGCCTGCCGAGGAG
CTGATCCAGAATGATGATCCAACTGAAGACAAGAACAAGGAATAAGTATAATATGCATCGTGCTTTTTATAGGGAAAAAT
CGCGGTTCTGCTGTCATGATGCCAAAACTG-TGCCTTGTTAAATAACTAGCACCGGTACTTATAGTATGCCTGAGGTTGA
GCTCTGCAGTTTTAGCTGCGGTATATCTGGCTTCTTCCACATTCAGCTATGCTTGAACCAGCTAGGAATGAACATTTCAT
GATGGTGGTGTTGTAGTGCCGGATGTGTAAGAAG-AAATAATAACAATGAAACTTCATATCTTAACAACACTTTCAAGCA
ACTGTGACGT----------------------------GTGCTGATTTATACCTAATGGAGCAGTATATAT---ATCATG
TCTAAACTGTGCAGCCCCAAGATAAAAAATAATGTAGAAACCAATTCCCACAACATGGTAATTGAAAGCCTTCACAAACC
GGTGCTCTTTAGCTTTTCACACACAACCTGGT------TTGGAGGTGTTGAGACCGAAAAGAATATAAATATAGGTCCGA
TGATAATGGACAGTA----CATTAGTGAACAGAGAATAAGCCTCAGTCATGCTGACCATGTCC-AAACTTGTGGAGAGGT
GTTGTGTTACCAATCTCACCGGGACATTGGCAATTGCACAAAAGACTTAATTGGTTAAGCAACTAAGGGAGAAACATGTT
AGCCTGGCTAGAGTTTACAGCATTATCAGGAATTTCTTTGGGATCCTAGAGAATGTGCACCAAACGATCGCTTAAGACAG
TATGCAGCAAACCTAAGCCGTGAACAATCAGAGTTCACATATATTGTGCAAGTTGGTGAGGAAAGCCTAAGAAACTATGC
TACGAAGACAACGGACATCTCTGATGGCATGAGGGCTGCTGATCCAGTTTTACATACAGCGTGAAAGTTGATGCTGAATG
CAAAATAAAGACGCTCATCTGGACTACGGTGCGGCCAGGTTGATGTCAACTTGTAAAGGACTGCGGGGTAG
>chr3D_172
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---------------TCTGTTTACCTGTGTGCTAACTGATTTTGTGTCTAATTCAAATTTATGGCACTCTTCTC------
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--------------------TGCTGTGTGCATTTCAAATTCCCACCAACATAGCACAAGAAAAATTCATGGTGACGTATG
AAGGCATACCTGTGCTACTTATTCAAATGTTTATTTCTTCGTGTCTTTGATTAAGTGGATAACAACCTTGCTGTT-ACAA
ACCATAAGCTAACATTTGGTTTTCGGTCAGGAAAAATACCG----AGGTAGGCATGCCGCCCTCCCATAAAATATAATTA
ATCAGTTTTAATCCCCATTTGCATTTACATTGATATTGACATGGCATAAAGGAAATGAAGCATCTGATTTGTATTCTGGC
TCTTGTTCTGAGAAAACACAAACAACTCCATCGAAGATCTGAAATGTTCTGTCCCTTTTGTTCATATGTTATCTACTGTA
-----------------CCATGAATCTGGATTATAATTCACGAAATTGAACTCCTCTCTGGCAGCTTAATTTCACTATGT
CCGGAATGCCATCTGATGATGCAAGTGCTCAAATGAGGCTTGAAGGAGAAGTTTCTGGCGAAAAGGTAGAAGACACTCAA
GATGAGAATGAAGGCAGTGGCATGCCCTCTCCACAAGAGGAGGTACCGTCTTTTCCCTGTACCATTTTTT-GGGGG--GT
CTTGGCCTCTTGGGTGTATATTATTCATGTGATCTTTGTTCCAAACTTGTATGGCACGTGTTAATTAGCTCTGTGCTTGT
ATGGGTACTCGCAGGAGGCAGCAATCAAGAAAAAATATGGAGGAAAAATGCCCAAAAAATCGCCACTTATATCGAAGGTC
AATGCCGTTGTCTTCTAACGTCTTCACTTCCCTT-CAAATTAAATTGTGTAAAACCTTTATATAAAGTAACACAGGTGTA
GAATTAAAATTTTATTTT--AAATTAAATGATATAACCTTATAATTTTAAATATCAGGACCATGAGCGGGCTTTCTTTGA
TTCTGCTGATTGGGCTTTAGGAAAGGTAAGCCTTAAATCTTTTGAAAAGCTAATATAGTGTGATATCTACATTTCAAAAA
ACCTAAATAAGCAATGCAACTACAACAGTTTTACTTCTTCATTTGTTTGCTGCAGCAAGGTGGAAGTCCCAACAAGCCTA
AAGGGCCCCTTGAAGCTCTTCGACCAAAACTCCAGGTATCGATAGTTTGATACTAATGCTCACCAGATGCAAACTTCAGC
TTATGCTTTCTGCACTCTGTTTTTTACTTTTTAGTATAATACTGATATATATAGTTGAATGATCTGTGCTCATTATACTG
TAAAGATAAGTGGATGTCCTGATCATGCAGCTCTTAGCTTAACTTTACAAAGTATGCTGTCCCATTCTCATTGCTTGAAG
CTTGACAACATGTCTTTCATTACTAAAGATAGCAATGTTGAAGTC-ACTTGCAATTCTATGTTGTGCGAAGTTCATCTCT
TCACTCAGTTAAAAAAGAAGTCCGTCTCTTCACTTGTGTTTCCTGATCTACTTTCAGCCTACTCAACAAAATGCTCGTGC
CCGCCGATCTTCCTATGCATCTGCAGACAATGATGGTACTCCTTATCTGCGCATGCTAAGCAGACAACTCCCTGTATTTG
A-TGGTCAATGTAGTCCCAGTCTCACACAACATTGTCTTTTATTTTTTCTGTAGAGAGTTTGAGTTTGCCTGCCGAGGAG
CTGATCCAGAATGATGATCCAACTGAAGACAAGAACAAGGAATAAGTATAATGTGCATCGTGCTTTTTATATGGAAAAAT
CGCGGTTCTGCTGTCATGATACCAAAACTG-TGCCTTGTTAAATAACTAGCACCGGTACTTATAGCATGCCTGAGGTTGA
GCTCTGCAGTTTTAGCTGCGGTATATCTGGCTTCTTCCACATTCAGCTATGCCTGAACCAGCTAGGAATGAACATTTCAT
GATGGTGGTGTTGTAGTGCCGGATGTCTAAGAAGAAAATAATAACAATGAAACTTCAGATCTTAACAACACTTTCAAGCA
ACTGTGACTT----------------------------CTGCTGATTTATATCTAATGGGGCAATATATATAACATCATG
TCTAAACTGTGCAGCGCCAAGACAAAAA-TAATGTAGAAACCAACCCCCACAAAATGGTAATTGAAAGCCTTGACAAACC
GTTGTTTTTTAGCTTTTCACACACAACTTGGT------TTGGAGGTGTTGAGACCGAAAAGAATATAAAGA---------
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>SNPs
SSSSSSSSSSSSS---S-S-------------------S-S-----------S--------S----S--S----------
S--S--------S-----S-------SSS-------------------------------S-----S-----SSSSSS--
----S-------S----------------------------------S-----------------S-------SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS--------------S-----------------------S---------------------
---S--SSS-----------------------------------------------------------------------
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--------------------------------------------------S-------------------S---------
SSSSSSSSSSSSSSSSS------------------------S---------------------S----------------
---------------------------------------S----------------------------------------
-----------------------------------S--------------------S------S---S------------
----------S---------------------------------------------------------------S-----
--------------------------------------------------------------S----------S------
-------------------------------------S------------------------------------------
S--------S---SSS--SS--S-S---------------SS--------------------------------------
---------------------------------SS------------------------------------S------S-
-S-------------------S----------------------------------------------------------
----S-----------S--------------S--------S------------------S---S----------------
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---------------S----------------------------------------------------------------
------------------------------S------------------------SS------S----------------
-------S------S-S-----------------------------S---------------------------------
--------------------------------------------------------------SSS--S-----------S
SS--S------------------------S----S---------------------------------------------
----S-------------------S---S-----------------S---------------------------S---S-
-S---------------S------------S---------------S----------S------S---------------
------------------S--S----------------------------------------------------------
-------------------------------------------------S------------------------------
----------SSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------S-------------------
-----------------------S--------------S-----------------------------------------
------------------------S-------SSSSSS--------------------------------------S-S-
---------------SSSS------------S-------------S------S----------S----------------
---------S------------------------------------------------------S---------------
---------------------------S---------------S-----------S------------------------
--------------------------------------------S---------S----S------------S-------
--------------------------S---------------------S-----------------------------S-
-----------S--------------S-------------------------------------S------
>forward_775
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-----------------------------------TACGCGGGTGGATCTTAAGC-------------------------
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>reverse_2998
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-------------------------------------GTTGGAGGTGTTGAGACCGA-----------------------
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