>input_sequence_60345
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--------------------------------------------GAATAAATCCAGCTTCACGACACCTCCCATCCTCTT
CACCATGGCAGCTGCCGCATGCTGGTCCTCGCTCCCGTCCGACCTCATCAACCGCATCACCGATTGCCTCCTAGCCACAA
ATGATATCGACTGCTACGTAGACTTCCGCGCTGTCTGCAGCAACTGGCGCTCCGCCACCGTCAACCCCATGAACACCTCC
GGCCTCTGCTTCCGCCCCCGACTCTGGATCATGCTCGACGAGGTCTTTGAGAACTATGCACGCATCTTGGTGAACACCGC
CACCGGCCGCGTCATCCGGAAGGACTTGCCTCTGCTGCGCAACTACTATGTTATCGCCACCACTGCCGGCGGCTTCTTCG
TCCTGGCGGACAGGAAGTACCATCACGCCGCGCGTCTTCTCAATCCTTTCACAGGCCACTTGATCCGTTTCAAGGCGCCC
GTGCCTTTCGAGCTGGACGTTGCTGCTGCTGTCTCCGGTCCTTCGCCCACCCTCATCTTGATTTCTGACAGATCTCGCAG
GCAGTACAGGGCTGATCCTTCCAGTGAATGTTTCGCCGTGTACGAGGACCAGTACACTTATCCTGTGACCCGGCTGGCTG
TCCTAGGTGGTATGTACGCCGACGGCGTGCAAGGATCATTGCCGCCGATTCCAGATGTTGTGGCTAAGAAGATCTTCCAT
CTGATGGGGATGTTTGGCGTCGAACCATCTGAGATGTACTCTGACGATCTCATTGATAATTTTGCTGGCTATATTCCTCA
GATGATACATGCCAACCGGTGTTTCCTAGTGAAGTTCGACGGAGAAGTGTTTGTTATATTTAAGCTGCGGCATCACATGG
AGGTTTTCAAGATGGACACTGAGAGGGACTTGCTCGAACCTGTGAAGAGCATCGGCAACCTTGTCATCTTCATTGGTTAT
CGTAGGTGCCTGATTGTGAATGCTGAGAAGTTCACATCTATTGACGCCAACTGCATCTACTACATAAGATCCATTGATTA
CTCCATTCATATCTACTCCCTTCTTTTCGGTTTATAAGGTTCAAATCTAAAATCTCATCAATCAAGGCACATGATGAGTG
GAGGAATGTATCTCGTACTTTACAAAACTACCCAAA--------------------------------------------
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>chr6A_1_TraesCS6A01G141000
GAAGTGTCAGCATTACGATCATTTCCGGTCTTCTTTGGGAAGTCGTAACGGCGGCGGCGGCCGCGTCCTTTGAAGTCCCA
ACTCCCATTAATCCCCACTACTAGAGCCAAAGGCATTGAATTCACACCATCTGTCAATCCCCCTATTTAACCCCTGGGTC
ACCATCCCTCTTCTTTAGGCTGGTCATAGTGGGAAGTAACTTATACTAATATCATGTATATGACACTAGTCTAAGTTGCT
ATCTTTATAGTGTAAAGTAACATAGGGGGTGTTTGTTTCCAGGGACTTTTTTGTGTAGGGACTAGAAAAAGTCTCTCTTA
GAGACTCTTTTACCAAACGGGAGGAACTTTTTAGGGACTAAACTAGGCATTTGGAACTAAATGAAGAAGACTCTCAAGGT
GAGTCTTTTTTGGGACTTTTTGGGACTTTTCCAACAATGCCCCTCCATGCATTCATTGGCCCGCCACCCCATGATGTTGT
TTGATTGTTATTTCTCTATATACTCCCTCCGGTCCTTTTTACTCTGCATATTAGGTTTTTTCGGAGTCAATCTCATTCAA
CTTTGACAAAGTTTATATAAAAAATTATAGACATTTCACATAACAACACCAATATCATTAGATTCATCTTGGAATATGTT
TTCATAT----TATATTTATTAGATATTATAGATGCTAATAATTTTTAATATAAATTTGGTCAAACTTAGCAAAGTTTGA
CTTTCGGCAAATCAAATGTGCAGAGTAAAAAGGACCGGAGGGAGTACTAGGGGCAACATGGTCATTTAATAACCTCTAGG
AATGGACTAAGGACTTTTTAGTCTCTGAAAACAAACAGGGAGGAACTTTTTAGGGACTAGAGACTTTTTAGTTGGGACTA
GAAAAAGTCCTAAGACTTATGAACCAAACAGGGCCATAGTACTAGTATCATAGATAGCTTCATTTATTAGCTTGTAGACT
CATCTTGTATTAAGAAGCGCTATATTGTAGTAACGTATTATAAAGAATAAATCCAGCTTCACGACACCTCCCATCCTCTT
CACCATGGCAGCTGCCGCATGCTGGTCCTCGCTCCCGTCCGACCTCATCAACCGCATCACCGATTGCCTCCTAGCCACAA
ATGATATCGACTGCTACGTAGACTTCCGCGCTGTCTGCAGCAACTGGCGCTCCGCCACCGTCAACCCCATGAACACCTCC
GGCCTCTGCTTCCGCCCCCGACTCTGGATCATGCTCGACGAGGTCTTTGAGAACTATGCACGCATCTTGGTGAACACCGC
CACCGGCCGCGTCATCCGGAAGGACTTGCCTCTGCTGCGCAACTACTATGTTATCGCCACCACTGCCGGCGGCTTCTTCG
TCCTGGCGGACAGGAAGTACCATCACGCCGCGCGTCTTCTCAATCCTTTCACAGGCCACTTGATCCGTTTCAAGGCGCCC
GTGCCTTTCGAGCTGGACGTTGCTGCTGCTGTCTCCGGTCCTTCGCCCACCCTCATCTTGATTTCTGACAGATCTCGCAG
GCAGTACAGGGCTGATCCTTCCAGTGAATGTTTCGCCGTGTACGAGGACCAGTACACTTATCCTGTGACCCGGCTGGCTG
TCCTAGGTGGTATGTACGCCGACGGCGTGCAAGGATCATTGCCGCCGATTCCAGATGTTGTGGCTAAGAAGATCTTCCAT
CTGATGGGGATGTTTGGCGTCGAACCATCTGAGATGTACTCTGACGATCTCATTGATAATTTTGCTGGCTATATTCCTCA
GATGATACATGCCAACCGGTGTTTCCTAGTGAAGTTCGACGGAGAAGTGTTTGTTATATTTAAGCTGCGGCATCACATGG
AGGTTTTCAAGATGGACACTGAGAGGGACTTGCTCGAACCTGTGAAGAGCATCGGCAACCTTGTCATCTTCATTGGTTAT
CGTAGGTGCCTGATTGTGAATGCTGAGAAGTTCACATCTATTGACGCCAACTGCATCTACTACATAAGATCCATTGATTA
CTCCATTCATATCTACTCCCTTCTTTTCGGTTTATAAGGTTCAAATCTAAAATCTCATCAATCAAGGCACATGATGAGTG
GAGGAATGTATCTCGTACTTTACAAAACTACCCAAACTAAATTGATGCATTAATTGAGATTAATTGCAGTGGATGCATTC
TTGGCCACTACTCCCTCCTTTCCGGTTTATAGGGTTTATCTCAAAATTTTAGTTTTTTCATTTTATAAGGCTCAATTTGG
TTGTTCCCCATCACATGTTCAGACTTTAAGGTGCATTAAATCATTGCATGCAAGTATTAAGAGAAAATTGATCCATGCAT
GCACTTTATGTATGCATGCATTGCAATTAATGCATTCGTAAACATAATTTTTTA-AGGAAAACAAGAGCATTAATTGGGT
GCTTTTGCAAATTATAAAAAATATTCCATCACTCATCATCTATCTTGGTTGGTGAGATTTTTGAATTGATCCTTATAAAC
TGAAAAGGAGGGAGTAGATGAGTAGTAGCATTACATGCATTGGTGAGTTTCTTTTTAATTCTTGCATGCAAAGATTTAAC
GTGCCTTGGAATCTCAAAAGGAGATGGAGATGAGCCCTTTAAATCGAAAAAATGAAAATTTTGAGATGAGCCTTATAAAC
CGGAAAGGAGGGAGTACAAGTTTGATCTCAGAGACAAGAGAGAAGAGAGAATATCTCAAGCCATAAATTCTTTAAGTGCC
ATCTCACCGTCCTATGCTCACCCTCCTTTCACAATCATTCAACTCATCTCCAGCTACACCGTCAACATCCGGGAATCCCA
ACTTGTGTTTGCACGAATGATACAAGGTCTCTCTAGTGTTAGTATAGATGGGGATAAGTCACCATACGACCTTGAGGATT
TGGTTTCTATGGTCGAACATGCTATGATTTGATAAGCTAAGTTGTTCCTTTTTTCGTTTCTACTTCTTGTTATCCAAGCA
GACATGCTTGTTCTGGTAAAGTACTTCAATTTGGCTTATGTGTGGTTGAAGTTGAACAACAATTTGTATGGTGAGAATGC
ATGCTTAAAGTTACCGTCATTCTAGAACATCTAAGAACAGAACTGTGGTTTTCAGAAAGCATTAGTGCAAGTGTTCT
>chr6A_1
GAAGTGTCAGCATTACGATCATTTCCGGTCTTCTTTGGGAAGTCGTAACGGCGGCGGCGGCCGCGTCCTTTGAAGTCCCA
ACTCCCATTAATCCCCACTACTAGAGCCAAAGGCATTGAATTCACACCATCTGCCAATCCCCCTATTTAACCCCTGGGTC
ACCATCCCTCTTCTTTAGGCTGGTCATAGTGGGAAGTAACTTATACTAATATCATGTATATGACACTAGTCTAAGTTGCT
ATCTTTATAGTGTAAAGTAACATAGGGGGTGTTTGTTTCCAGGGACTTTTTTGTGTAGGGACTAGAAAAAGTCTCTCTTA
GAGACTCTTTTACCAAACGGGAGGAACTTTTTAGGGACTAAACTAGGCATTTGGAACTAAATGAAGAAGACTCTCAAGGT
GAGTCTTTTTTGGGACTTTTTGGGACTTTTCCAACAATGCCCCTCCATCCATTCATTGGCCCGCCACCCCATTATGTTGT
TTGATTGTTATTTCTCTATATACTCCCTCCGGTCCTTTTTACTCTGCATATTAGGTTTTTTCGGAGTCAATCTCATTCAA
CTTTGACAAAGTTTATATAAAAAATTATAGACATTTCACATAACAACACCAATATCATTAGATTCATCTTGGAATATGTT
TTCATAT----TATATTTATTAGATATTATAGATGCTAATAATTTTTAATATAAATTTGGTCAAACTTAGCAAAGTTTGA
CTTTCGGCAAATCAAATGTGCAGAGTAAAAAGGACCGGAGGGAGTACTAGGGGCAACATGGTCATTTAATAACCTCTAGG
AATGGACTAAGGACTTTTTAGTCTCTGAAAACAAATAGGGAGGAACTTTTTAGGGACTAGAGACTTTTTAGTTGGGACTA
GAAAAAGTCCTAAGACTTATGAACCAAACAGGGCCATAGTACTAGTATCATAGATAGCTTCATTTATTAGCTTGTAGACT
CATCTTGTATTAAGAAGCGCTATATTGTAGTAACGTATTATAAAGAATAAATCCAGCTTCACGACACCTCCCATCCTCTT
CACCATGGCAGCTGCCGCATGCTGGTCCTCGCTCCCGTCCGACCTCATCAACCGCATCACCGATTGCCTCCTAGCCACAA
ATGATATCGACTGCTACGTAGACTTCCGCGCTGTCTGCAGCAACTGGCGCTCCGCCACCGTCAACCCCATGAACACCTCC
GGCCTCTGCTTCCGCCCCCGACTCTGGATCATGCTCGACGAGGTCTTTGAGAACTATGCACGCATCTTGGTGAACACCGC
CACCGGCCGCGTCATCCGGAAGGACTTGCCTCTGCTGCGCAACTACTATGTTATCGCCACCACTGCCGGCAGCTTCTTCG
TCCTGGCGGACAGGAAGTACCATCACACCGCGCGTCTTCTCAATCCTTTCACAGGCCACTTGATCCGTTTCAAGGCGCCC
GTGCCTTTCGAGCTGGACGTTGCTGCTGCTGTCTCCGGTCCTTCGCCCACCCTCATCTTGATTTCTGACAGATCTCGCAG
GCAGTACAGGGCTGATCCTTCCAGTGAATGTTTCGCCGTGTACGAGGACCAGTACACTTATCCTGTGACCCGGCTGGCTG
TCCTAGGTGGTATGTACGCCGACGGCGTGCAAGGATCATTGCCGCCGATTCCAGATGTTGTGGCTAAGAAGATCTTCCAT
CTGATGGGGATGTTTGGCGTCGAACCATCTGAGATGTACTCTGACGATCTCATTGATAATTTTGCTGGCTATATTCCTCA
GATGATACATGCCAACCGGTGTTTCCTAGTGAAGTTCGACGGAGAAGTGTTTGTTATATTTAAGCTGCGGCATCACATGG
AGGTTTTCAAGATGGACACTGAGAGGGACTTGCTCGAACCTGTGAAGAGCATCGGCAACCTTGTCATCTTCATTGGTTAT
CGTAGGTGCCTGATTGTGAATGCTGAGAAGTTCACATCTATTGACGCCAACTGCATCTACTACATAAGATCCATTGATTA
CTCCATTCATATCTACTCCCTCCTTTTCGGTTTATAAGGTTCAAATCTAAAATCTCATCAATCAAGGCACATGATGAGTG
GAGGAATGTATCTCGTACTTTACAAAACTACCCAAACTAAATTGATGCATTAATTGAGATTAATTGCAGTGGATGCATTC
TTGGCCACTACTCCCTCCTTTCCGGTTTATAGGGTTTATCTCAAAATTTTAGTTTTTTCATTTTATAAGGCTCAATTTGG
TTGTTCCCCATCACATGTTCAGACTTTAAGGTGCATTAAATCATTGCATGCAAGTATTAAGAGAAAATTGATCCATGCAT
GCACTTTATGCATGCATGCATTGCAATTAATGCATTCGTAAACATAATTTTTTA-AGGAAAACAAGAGCATTAATTGGGT
GCTTTTGCAAATTATAAAAAATATTCCATCACTCATCATCTATCTTGGTTGGTGAGATTTTTGAATTGATCCTTATAAAC
CGAAAAGGAGGGAGTAGATGAGTAGTAGCATTACATGCATTGGTGAGTTTCTTTTTAATTCTTGCATGCAAAGATTTAAC
GTGCCTTGGAATCTCAAAAGGAGATGGAGATGAGCCCTTTAAATCGAAAAAATGAAAATTTTGAGATGAGCCTTATAAAC
CGGAAAGGAGGGAGTACAAGTTTGATCTCAGAGACAAGAGAGAAGAGAGAATATCTCAAGCCATAAATTCTTTAAGTGCC
ATCTCACCGTCCTATGCTCACCCTCCTTTCACAATCATTCAACTCATCTCCAGCTACACCGTCAACATCCGGGAATCCCA
ACTTGTGTTTGCACGAATGATACAAGGTCTCTCTAGTGTTAGTATAGATGGGGATAAGTCACCATACGACCTTGAGGATT
TGGTTTCTATGGTCGAACATGCTATGATTTGATAAGCTAAGTTGTTCCTTTTTTCGTTTCTACTTCTTGTTATCCAAGCA
GACATGCTTGTTCTGGTAAAGTACTTCAATTTGGCTTATGTGTGGTTGAAGTTGAACAACAATTTGTATGGTGAGAATGC
ATGCTTAAAGTTACCGTCATTCTAGAACATCTAAGAACAGAACTGTGGTTTTCAGAAAGCATTAGTGCAAGTGTTCT
>chr4A_259
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------------------AACTTAGGGGGTGTTTGTTTCCAGAGATTTTTTTGTGTAGGGACTAGAAAAAGTCCCTCTTA
AAGACTTTTTTACTAAACGGGAGGGACTTTTTAGGGACTAAACTAGGCATTTGGGACTAAATGAAGAAGACTCTCAAGGA
GAGTCTTTTT-GGGACTTTTTAGGACTTTTTCAACAATGCTCCTCCATGCATTTAATGGCCCACCACCCCATGGTGTTGT
TTGATTGTTGTTTTTCTATATACTCCCTCCGTTTTTATTTAGTTCGCATATTAGTTTTGGTCAAAGTCAAACTTTACAAA
CTTTGACCAAATTTATAAACAAAAATATTAAAATATATAATAACAA-ATCAACAACATTAAATTTTTTATTGAATGTACT
TTCACATCGTATAGATTTATTATG----ATAAATGTTTATATTGTTTTCTACAAACTTGGTCAAACTTTATGAAGTTTGA
CTTCAGTCAACTCTAATATACAGAGTAAATAAAAACGGAGGGAGTACTAGGGGTGATATGGTCATTTAATAACCTCTAGG
AAGGGACTAAGAACTTTTTAGTCACTGCAAACAAACAGGGAGGGACTTTTTAAGGACTAGA-------------------
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>chr6A_2010
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-------------TACTCCCTCCTTTCCGGTTTATAAGGCTCAAATATCAAATCTCATCAACCAAAGCATTTTGTGAGTG
GAGGAATGTATCTCGTACTTTACAAAACTACGTCATTTAAACTCATGCATTAAGTTGGATTAATTACAGTGCATGCATGC
TTGGCCACTACTCCCTCCTTTTCGGTTTATAGAGCTTATCTCAAAATTTTAGTTTTTCCATTTTATAAGGCTCAATTTGG
TTGTTTCCCATCACATGTTCAGACTTCAAGGTGCATTAAATCATTGCATGCAAGTATTAAGAGAAAACTGACCAATGCAT
GCACTTTATGTATGCATGCATTGCAATTAATGCATTCATAAACATAATTTTTTTGAGGAAAACAAGAGCATTAATTGGGT
GCTTTTGCAAACTACAAAAAATATTCTACCACTCATCATCTATCTTGGTTGATGAGA-TTTTGAATTGAGCCTTATAAAC
CGG-AAGGAGGGAGTAGGTGAGTAGGAACATTACATGCATTGGTGTTGTTCTCTTTAATTCTTGCATGCAAAGATTTA--
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>SNPs
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----------------------------------------------------------------------S---------
--------------------------S-----------------------------------------------------
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---------------------S----------------------------------------------------------
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S-------------------------------------------------------------------------------
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>forward_134
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-------------------------------GGCATTGAATTCACACCATCTGT--------------------------
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>reverse_1351
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----------------------------------------------------------------------GGCTTCTTCG
TCCTGGCG------------------------------------------------------------------------
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>forward_1387
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------CGGACAGGAAGTACCATCACG-----------------------------------------------------
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>reverse_2481
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TGAAAAGGAGGGAGTAGATGAGT---------------------------------------------------------
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