>input_sequence_60343
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--------------------------------------------ATGGCTGATGAGGATGAGTACCGATGCTTCGTTGGG
AACCTGTCCTGGTCCACAACTGATGAAAGCCTCAAGGATGCATTCTCAAAATATGGCAAAGTTACCGAGGCAAAGGTGAC
GTGGACAATCTCTTGGTCATCAATTCTCTGTTTACAATTCAACAACTGCATATGTTCGAATTATTTTCCTGATCCTACGC
TCAGCGTCTGATAGAGCATTGATGAAGCAATTTTTATGCCTTCTGCTGGACTCTTTTCGTCACTAGTTATTCACTTATTT
TGTCTCAGAGATCAATCTTTTCCTCAGTTCTG------------------------------------------------
---------------------------------TGTCCAACCTTGATACAATAGAGCTTTAGGACATACGGTTGCATATC
TACACATTCCCAACTATTGATTATATGTGGAATGTTTTTTGTTTACTTGTTATTAGTTCCTGAATTGTTTTGCAAATATT
GGCTTTATGTTGGTTGACTGAGTGATGCC---TTTTATTACCTTCACAACTATTCCTCATATGCACTTTGCCGTTTATTC
ATCATGAGCTTTTATTTATCTTTGTTTTCTGGTAATGTGCAGGTGGTTATGGACAAGTTTTCTGGACGTTCACGTGGATT
TGCCTTTGTGACCTTTGATGAGAAGAAAGCCATGGAAGAAGCTATCGAGGACATGAATGGATTGGACTTGGAAGGGAGGG
CCATCACTGTTGATAAAGCTCAGCCTCAAGGGGCTGGTAGAGATCGTAACGGTGACCGTGATTTTGATCGTGACCGTGGG
TCTCGTGGTGGCCGTGACTATGGCGGTGGTCGTGCGCCGCGTGGTGGTGGTGGTGG---GGACTGCTTCAAGTGCGGCAA
ACCTGGACACTTTGCTAGAGAGTGTCCAGATGGTGACGGCGGGAGAGGTGACCGATATGGTGGCAGAGATGATAGGTATG
GTGGTGGTAGATCTGACCGTGGCGGTGATCGTTCTGACCGTGGCGGCGATCGTTCTGACCGTGACCGTTCTGACCGTGGC
GGCGACCGTTCTGATCGTGACGGTGATCGATCTGAGCGTGGCAGTGACCGATATTCTAGCCGTAGCCGAGATGGTGGAAG
CGGGGGTGATCGTTACAGTCGTGACCGATCAGGTCCCTACTGA-------------------------------------
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>chr5D_1_TraesCS5D01G516500
CCCCCCCGCGCCACTACTGTACTGTACGACGCGGTCTCTCCTCCGCTCCGCTCCGGTCAACCCAAGTTCCTCCTCGCCTC
CCAAGCCGTCTTCCTCCTCCTCGCAGGTGAGATCTCTCGCCTCCTCCCCCGCCCCAGCCTCTCCCGGAGATGGCCGCGGT
GGCCGGCTGTCTGGTTGCGTGCTTTCGGCCCTGTTTCTGTTCGCTCTCGATCGTCCCACGGGTCTAGACTAGGGCTTGAT
TTGGTCGGTGCTCTGTAGAATATCGAGCGATTGGTTGCTCGGCCTGGCTCCAGTCTGTATCTCTAGTCTGAATGAAGCTC
GCGTTTCTGGTGTCCATTCCGCATCCAGGACGAATCCCCCAACGGCACAACGCACATCTAAGATTTAAGCTTCTTATTAC
TGTAGCGCTGTTCGGCAGTTCATCCCATCCTCCCTAATAAAACTGAGCATGTTTTTTTAGGACACCTGTTTCCTCAATTA
GCCTTGGGTAAAATACTAGTACTCCCTTCGTCTCACAATATAAGATCGTTTTTAAGCTATGTTAGAAGATCCAGAAGAAT
TGCTTTTCCTTTTTATGTTAGAAGATCCACAATGTAAAAAACTGCGATGCCATTCTGTTTGATGTCCGTAGTCGGTTCAG
CTTCTATTCTAGTACTATCTGTTTGTCCATACGTGTTTCAGCTTCTCTCCTCTGCTACTCTGCTTCCAGTAAAGCATCCT
CTTCTCGACCAACA-GATATGCAGTTTAGCTTAGATGAGTTGATTGATACCGCCTATTGACAAATTGCCATGGCATGCTC
AGTTTTTCCTTTTTTTTTGCTGCCTAAGATGTACTAAATCTTTGAGGTACCTATGAATCGAAGCACTCATCGCTTAGGAG
GTTGAATGAACAG-AATATTTGTTGATCGCCATATAA--TCTGTATTGCTCTTGTTCTTTTGGCAAGCTCTAACAGTTTC
TTACCTGCCCATCTGTTGTTGGATGTGTTTATATCCCCCCAGTGATGGCTGATGAGGATGAGTACCGATGCTTCGTTGGG
AACCTGTCCTGGTCCACAACTGATGAAAGCCTCAAGGATGCATTCTCAAAATATGGCAAAGTTACCGAGGCAAAGGTGAC
GTGGACAATCTCTTGGTCATCAATTCTCTGTTTACAATTCAACAACTGCATATGTTCGAATTATTTTCCTGATCCTACGC
TCAGCGTCTGATAGAGCATTGATGAAGCAATTTTTATGCCTTCTGCTGGACTCTTTTCGTCACTAGTTATTCACTTATTT
TGTCTCAGAGATCAATCTTTTCCTCAGTTCTG------------------------------------------------
---------------------------------TGTCCAACCTTGATACAATAGAGCTTTAGGACATACGGTTGCATATC
TACACATTCCCAACTATTGATTATATGTGGAATGTTTTTTGTTTACTTGTTATTAGTTCCTGAATTGTTTTGCAAATATT
GGCTTTATGTTGGTTGACTGAGTGATGCC---TTTTATTACCTTCACAACTATTCCTCATATGCACTTTGCCGTTTATTC
ATCATGAGCTTTTATTTATCTTTGTTTTCTGGTAATGTGCAGGTGGTTATGGACAAGTTTTCTGGACGTTCACGTGGATT
TGCCTTTGTGACCTTTGATGAGAAGAAAGCCATGGAAGAAGCTATCGAGGACATGAATGGATTGGACTTGGAAGGGAGGG
CCATCACTGTTGATAAAGCTCAGCCTCAAGGGGCTGGTAGAGATCGTAACGGTGACCGTGATTTTGATCGTGACCGTGGG
TCTCGTGGTGGCCGTGACTATGGCGGTGGTCGTGCGCCGCGTGGTGGTGGTGGTGG---GGACTGCTTCAAGTGCGGCAA
ACCTGGACACTTTGCTAGAGAGTGTCCAGATGGTGACGGCGGGAGAGGTGACCGATATGGTGGCAGAGATGATAGGTATG
GTGGTGGTAGATCTGACCGTGGCGGTGATCGTTCTGACCGTGGCGGCGATCGTTCTGACCGTGACCGTTCTGACCGTGGC
GGCGACCGTTCTGATCGTGACGGTGATCGATCTGAGCGTGGCAGTGACCGATATTCTAGCCGTAGCCGAGATGGTGGAAG
CGGGGGTGATCGTTACAGTCGTGACCGATCAGGTCCCTACTGATGGCCTGGATCTTGAGAAGTGTGTTTCATCCAGGTAT
GAAAACCCTATCTACTATCATGAGGTGTGTTTCCTTGTGTCTGAAACTTTGTGATCATGTATTTGAATCATAATGATGTA
CCGTGAGTAAGCAGATCCTTTATTACAGACCATATTACTGACCTGCTTATTATTTGCTTCCTGGTTAATGTGAGTCACAT
GGACTTTGGCCATAAAATGCTTGGCGCTGGGCCCTACATGTTTGCTTGATATGCTGCTCGGTGGTTCTTGCTTGGTTGAG
AGGTGGCTTTTGGTCGCGCTGTGTGTTGATGCTCCATCATGCTGGTTGTGCTCATGCGAGATACGTGGGTTATGTGGGAT
TGGACGGGCATACCATGTTGTTGTTCCTGTGGTACCGGGAAGGAAACGGTGAACTAAACTTTGCTTGAAAAATTCATCGC
AAGAAA-AGGGGGAGATGACAATCATCGGTCCGTAAAAGGAAAAGCAAACCGGTAATCTCTTTCAATGCTCTGTTTTTGA
GATTGAGTTGACCTATCAATCTTAAATGATCTTCTGTTTTGGCAGGCCCCCTTTTGGGTTGCTTATTTTGTTCTGGATCG
GTTTCGTTG-----------------TTGTCTAATAATGACTGAGGTCATGTTGGCTGATTCCAATCCGTGCCAGTATAC
CATAGCCATTGGAGGACCCCTGCTTCTCTGCAGCCTGCCTAAAAATGTTGGTCTGTGCCTTTGCCGCTGTTGGTCGGCTT
TGGTACCTGGTCACTGGAGTTTGTCCCTGTTGGTCGGCCTTGCTACCTGGTCGCTGGAGTTTGCTAGCTGTTGTTTCCTT
GTTTCGTTGAGCTGTGCCGTTCGTCGCTAGAGATGCATCACTGGGCCGTGTTCGTCGCGAGAGATGCGCATGAGAATAAT
GCTGAGCTA--CCTGGCTATTCTTCTTTGGCAATGCACCACCGGAGTAGCAGGTTCCGTTAGTATGTAGTGTATTATAGT
GTGCCATTGCAAGTTTACATGGC
>chr4A_692
CTGCT---------------------------------------------------------------------------
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----------------------------------------------------------TCTGCTTCCTGTAAACTATCCT
CTTCTCCACAAAAA-GATATCCAGTTTAGCTTAGAAGAGCTAA-TGATACTGCCTATTGACAAATTGCCATGGTCAGCCT
TT-----------TTTTAGCTGGCTAAGATGTACCAACTCTTTGCGGTACCTATGAAGC-----ACTTACCGCTTAGGAG
GTTGAATGAACAG-AATATTTGTTGATCGCCATATAATCTCTGTATTGCTCTTGTTCTTTTCGCAAGCTCTAACAATTTC
TTACCTGCCCATGTGTTGGATGCGTTTGTT-TATCCTCCCAGTGATGGCTGATGAGGATGAGTACCGATGCTTCGTTGGG
AACCTGTCCTGGTCCACAACTGATGAAAGCCTCAAAGATGCATTCTCAAAATACGGCAAAGTTACCGAGGCAAAGGTGAC
TTCCACAATCTCTTGGTCATTGATTCTCTGTTTACAATTCAACAACTGCATATGTTTGCATTATTTTCCTGATCCTACGC
TCAGCGTCTGATAGAGCATTGATGAAGCAATTTT-ATGCCTGCTACTGGACTATTTTTGTCACTAGTTATTTACTTATTT
TGTCTCAGAGATCAATCTTTACCTCAGTTCTGTGTCCAACCTGCTACTGGACTCTTTTCGTCACTAGTTATTTACTTATT
TTGTCTCATAGATCAATCTTTACCTCAGTTCTGTGTCCAGCCTTGATACAATAGAGCTTTAGGACATACGGTTGCATATC
TATACATTCCCAAGTATTGATTATATGTGGAATGTTTTTTGTTTACTTGTTATTAGTTCCTGAATTGTTTTACAAATATT
GGCTTTATATTGGTTGACTGAGTGATGCC---TTT--TCACCTTCACAACTGTTCCACATATACACTTTGCCGTTTATTC
ATCATGAGCTTTTATTTATGTTTGTTTTCTGGTAATGTGCAGGTGGTTATGGACAAGTTTTCTGGACGTTCACGTGGATT
TGCCTTTGTGACCTTTGATGAGAAGAAAGCCATGGAAGAAGCTATCGAGGACATGAATGGATTGGACTTGGAAGGGAGGG
CCATCACTGTTGATAAAGCTCAGCCTCAAGGGGTTGGTAGAGATCGTAACGGTGACCGTGATTTTGATCGTGACCGTGGG
TCTCGTGGTGGCCGTGACTATGGCGGTGGTCGTGCGCCGCGTGGTGGTGGTGGTGGTGGGGACTGCTTCAAGTGCGGCAA
ACCTGGACACTTTGCTAGAGAGTGCCCGGATGGTGACGGCGGGAGAGGTGACCGATATGGTGGCAGAGATGATAGGTATG
GTGGTGGTAGATCTGACCGTGGTGGC------------------------------------GACCGTTCTGACCGTGGC
GGCGACCGTTCTGACCGTGACGGTGATCGATCTGAGCGTGGCAGTGACCGATATTCTAGCCGTAGCCGAGATGGTGGGAG
TGGGGGTGACCGCTACAGTTGTGACCGATCAGGTCCGTACTGATAGCCAAGATCTTGAGAAGTGTGTTTCATCCAGGTAT
GAAAACCCTATCTACTATCATGAGGTGTGTTTCCTTGTATTTGAAACTCTGTGATCATGTATTTGAACTATGATGTTGTA
CCGTGAGTAAGCAGATCCTTTATTACAGACCATATTACTGACCTGCTTACCA-TTTCTTCCTGCTTAATGTGAGTCGCAT
GGACTT-AGCCAT--AATGCTTGGCTCTGGGCCCTGCATGTTTGCTTGATACGCTGCTCGGTGGTTCTTGCTTGGTTGAG
AGGTGGCTT--------GCTGTGTGTTGATGCTCCATCATGTTGGTTGTGCTCATACGGGATACGTGGGTTACGTGGGA-
------GGCATACCATGTTGTTGTTCCTGTGGTACCGGGAAGGAAACGGTCAGCTAAACTTTGCTTGAAAATTTCATCGC
AAGAAAAAGGGGGAGGTGACAATCATCGGTCCGTAAAAGGAAAAGCAAACCGGTAATCTCTTTCAATGCTCTGTTTTCGA
GATTGAGTTTAGCTATCAATCTTAAATGATCTTCTGTTTTGGCAGGCCCCCTTTTGGGTTGCTTATTTTGTTCTGGATCG
GTTTCGTTGGGTTCTTCCTTCCGTTGTTGTCTAATAATGACTGAGGTCATGTTGGTTGATTCCAATCTGTGCCAGTATAC
CATAGCCATTGGAGGTCCCCTACTTCTCTGCAGCCTGCCTAAAAATGTTGGTCTGTGCCTTTGCCGCTGTTGCTCGGCTT
TGCTACCTGGTCACTGGAGTTTGTCCCAGTTGGTCGGCCTTGCTACCTGGTCGCTGGAGTTTGCTAGCTGTTGCTTCCTT
GTTTCGTTGAGCTGTGCCGTTGGTCGCTAGAGATGCATCATTGGGCCGTGTTCGTCGCGAGAGATGCGCATCAGAGTAAT
GCTGAGCTCTGCCTGGCTATTCTTCTTTGGCAATGCACCACCGGAGTAGCAGGTTCCGTTAGTATGTAGTGTATTATAGT
GTGGCATTGCAAGTTTACATGGC
>chr5B_699
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----------------------------------------------------------TCTGCTTCCTGTAAACTTTCCC
CTTCTCCACAAAAAAGATATCCAGTTTAGCTTAGAAGAGCTAA-TGATACTGCCTATTGACAAATTGCCATGCTCAGCTT
TTA--------TTTTTTTGCTGGTTAACATGTACTAACTCTTTGCGGTACCTAGG-AGT-----ACTTATCGATTTGGGG
GGTGAATGAACAGAAATATTTGTTGTTCGCCATATAA--TCTGTATTGCTCTTGTTCTTTTGGCAAGCTCTAACAGTTTC
TTACCTGCTCATGTGTTGGATGTGCTTGTT-TATCCTCCCAGTGATGGCTGATGAGGATGAGTACCGATGCTTCGTTGGG
AACCTGTCCTGGTCCACAACTGATGAAAGCCTCAAGGATGCATTCTCAAAATACGGCAAAGTTACCGAGGCAAAGGTGAC
TTACACAATCTCTTGGTCATTGATTCTCTGTTTACAATCCAACAACTGCATAAGTTCGAATTATTTTCCTGATCCTACGC
TCAGCGTTTGATAGAGCATTGATGAAGCAATT---ATGCCTGCTACTGGACTATTTTCGTCACTAGTTATTTACTTATTT
TGTCTTGGAGATCAATCTTTTCCCCAGTTATA------------------------------------------------
---------------------------------TGTTCAACCTTGACACAATAGAGCTTTAGGGCATACAATTGCATATT
TATACATTTCCCAGTATTGATTATATCTGGAATGTTTTTTGTTTACTTGCTATTAATTCCTGAATTGTTTTGCAAATATT
GGCTTCATATTGGTTGACTGAGTGATGCATTTTTT--TTACCTTCACAACTATTCCACATATACGCTTTACCGTTTATTC
ATCATGAGCTTTTATTTATGTTTATTCTCTGGTAATGTGCAGGTGGTCATGGACAAGTTTTCTGGACGTTCACGTGGATT
TGCCTTTGTGACCTTTGATGAGAAGAAAGCCATGGAAGAAGCTATCGAGGACATGAATGGATTGGACTTGGAAGGGAGGG
CCATCACTGTTGATAAAGCTCAGCCTCAAGGGGCTGGTAGAGATCGTAACGGTGACCGTGATTTTGATCGTGACCGTGGG
TCTCGTGGTGGCCGTGACTATGGCGGTGGTCGTGCGGCGCGTGGTAGTGGTGG------GGACTGCTTCAAGTGTGGCAA
ACCTGGACACTTTGCTAGAGAGTGCCCAGATGGTGATGGCGGGAGAGGTGACCGATATGGTGGCAGAGATGATAGGTATG
GTGGTGGTAGATCTGACCGTGAC------CGTTCTGACCGTGGCGGCGATCGTTCTGACCGTGACCGTTCTGACCGTGGC
GGCGACCGTTCTGATCGTGACGGTGATCGATCTGAGCGTGGCAGTGACCGATATTCTAGCCGTAGCCGAGATGGTGGAAG
CGGGGGTGACCGTTACAGTCGTGACCGATCAGGTCCCTACTGATGGCCTGGATCTTGAGAAGTGTGTTTCATCCAGGTAT
GAAAACCCTATCTAGTATCATGAGGTGTGTTTCCTTGTGTCTGAAACTTTGTGATCATGTATTTGAACTATAATGATGTA
CCGTGAGTAAGCAGATCCTTTATTACAGACCATATTACTGACCTGCTTATTATTTGCTTCCTGGTTAATGTGAGTCACAT
GGACTT-GGCCATAAAATGCTTGGTGCTGGGCCCTACATGTTTGCTTGATACGCTGCTCGGTGGTTCTTGCTTGGTTGAG
AGGTGGCTCTTGGTCGCGCTGTGTGTTGATGCTCCATCATGCTGGTTGTGCTCATGCGAGATACGTGGGTTATGTGGGAT
TGGACGGGCATACCATGTTGTTGTTCCTGTGGTACCGGGAAGGAAACGGTGAACTAAACTTTGCTTGAAAAATTCATCAC
AAGAAA-AGGGGGAGGTGACAATCATCGGTCCGTAAAAGGAAAAGCAAACCGGTAATCTCTTTCAATGCTCTGTTTTTGG
GATTGAGTTAAGCTATCAATCTTAAATGATCTTCTGTTTTGGCAGGCCCCCTTTTGGGTTGCTTATTTTGTTCCGGATCG
GTTTCGTTCGGTTCTTCCTTCCGTTGTTGTCTAATAATAACCGAGGGCATGTTGGTTGATTCCAATCTGTGGCAGTATAC
CATAGCCATTGGAGGTCCCCTGCTTCTCTGCAGCCTGCCTAAAAATGATGCT-TGTGCCTTTGCCCCTGTTCGCCGGCTT
TGTTACCTGGTCACTGGAGTTTGTCCCTGTTGGTCGGCCTTGCTACCTGGTCGCTGGAGTTTGCTAGCTGTTGCTTCCTT
GTTTCGTTGAGCTGTGCCGTTCGTCGCTAGAGATGCATCGTTGGGCTGTGTTCGTCGCGAGAGATGCACATCGGAATAAT
GCTCAGCTA--CATGGCTATCCTTCTTTGGCAATGCGCCACCGGAGTAGCAGGTTCCGTTAGTATGTAGTGTGTTATAGT
GTGGCATTGCAAGTTTACATGGC
>SNPs
-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S-----SS-----
------S--S--S-------S--------------S---S-S-S------S----------------------SSS---S
SSSSSSSSSSS-----------S--------------S------S------------S-SSSSS---S------------
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------------S-----SSS-SSS-SS--S-----S-------------------------------------------
-----------------------------------------------------S--------------------------
S-SS----------------SS----------------------------------------------------------
----------------------------------S------S--S-------S------------------S--------
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--S----------S------------------------------------------------------------------
--------S--------------------------SS-------------------S-----S-----------------
-------------------S------------------------------------------------------------
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------------------------S-------------------------------------------------------
-------------------------SSSS---------------------------------------------------
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---------S----------------------------------------------------------------------
-------------------------------------------------------------------SS-----------
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------S--------------------------------------------S----------------------------
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---------------S----------------------------------------------------------------
---------S-S--------------------------------------------------------------------
-------------------------------------------------------S-----------S------------
---------------S----------------------------------------------------------------
--S----------------------------------------------------------------------S------
----------------------------------------S------------------------------S--------
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---S-------------------
>forward_186
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------CTGTCTGGTTGCGTGCTTTC------------------------------------------------------
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>reverse_1094
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-----------------------------------------------------TGGCAAAGTTACCGAGGCAA-------
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>forward_382
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------------------------------------------CGGCACAACGCACATCTAAG------------------
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>reverse_2026
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-------------------------TGATCGTTCTGACCGTGGC------------------------------------
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>forward_430
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----------TTCGGCAGTTCATCCCATCC--------------------------------------------------
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>reverse_2452
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---------------------------------------------------TGCTGCTCGGTGGTTCTTG----------
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