>input_sequence_60342
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--------------------------------A-----------------------------------------------
---------------------------------------------------------TGGATCTCCAGACCTTCGTGCTG
AGGGTGACCATCCACTGCCATGGCTGCAAGAAGAAGGTCCGGAAGGTGCTCAAGAGCGTCGAAGGTACCAGCGTCGCCCT
CCTTAATTCTCCTCCCGCCGCTGCATTTTCG-----------GCTTAATTA----GCTTACTAAGTGGTCGTCGCGCGTT
TTGGTTGGGGTG------CTCAGGCGTGCAGGACGTGAAGGTGGATGCCCAGCTGCACAAGGTGATGGTGACCGGCACCG
TGGACGCCGAGACGCTCATCAAGCGGCTGCACAAGTCGGGCAAGCAGGCCCTGCCATGGCAACACAC---------GCCT
GCCAAGAATCCCGACCCTGCGCCGCCAGCCCCAGCCGACGCCCCCGCGCCGGCCG---------GGGACGGCAGCAAGGA
TGCTGCTGTGGCCGACAAGAAGCCGGCGG---------AGCCTGTGAAGGAGCCGCAGGCCGACAGCTCGGACAAGAAGC
CGGAGCAGGAGACGGCCCCCG---AGAAG---------------------------AAGCCTGAGGCGGAGAAGGAAGCA
GAATCTGAGAAGAAGGCTGACA---AAGAGGAGGAGGCAAAAC------CAAGCGACGAGGCAAAGCAAGACGGCGGCGA
GGGCG---------AG------CCCAAGGCAAAGGGCGCCGAGCCCGCGAGTGAGCCCGCTGCCGCCGCAAAGGAGGCCG
GCGGCAATGACGAGGCCGAGGCGAAGAAGAAACAGAGCAAGCCCAAGGACGC---------------CGATAGGTCCCTG
TCCC------------------ATGCGCCGAT------------GCACGCGCACCACGAATTCAACCCGTACGGCGCGCC
GCAGCCGGTGATGAGCTACAACATGGCGCAGCCGAGAGCGAGCGTGTCCCACTACGCGCCGCGGCCGGAGCAGGGCTACT
CGCTGCAGCAGCAGCAGGCCGGGTACTCCTCCTCCTCCA---------TGATGCAGCACCCACCGGCGCCGGCGCAGCAG
GCCTACTCCCAGCAGGCG---CAGCCAATGCAGCAATGGTCGCCGTCCTACCTCTACATGCCGTACCCGCACGCGTCGCC
GGAGTCCTACTACCAGGACTACTACAGCCCGCCCGGGACGCACGCGGCGCCGCCACCC---CTGCCGCCGCTCCAGGACT
CGTACCGCCTGTTCGACGACGAGAACCCCAACTCGTGCAGCGTCATGTGA------------------------------
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--
>chr5A_1_TraesCS5A01G030900
TAGGCTTTTTCTGCATCAGTGCTACATGAAACTCATGTGAAATATACCCAAGATAATTGTCTTTAGGGATGGAAGAGTTT
AGAACAAATGGGGAGGTTTGTGATGTGAGAATTTGTGCACATTGTGCATTGTACGGTAAATCGTAAAGTAGAAAAGAAAT
TGCAATTCAGTTAGAAGATTTATTTTTGTAAAATTTAAGTATG-AAAAATTCTAAAACAAAGAAGAATTGCATGCATTTT
G-ATGTTTCTGTGTATGATGCATTGTAAATCGTGAAGTAAAA---AAGAGTGTCATTTCATTCAGAAGAGAAATATATGA
ATAGTTAAAGCATGAAAGGTTTTAGAACAAACGAGAAACCCTTGTGTTTTGGGGTTTGTTTATTGTGATTAAGCTCAACC
ATGAAATATTTTCAATAGTACATGTGGCAGAATTTGTTGTTGTGCAGATGATATCCAACGGTCAATAGTGTCCG-AATTT
GCTATATTTGCACCGGCAGATTGGCTTCATCCAAAGACATATTTTAAAAAT-TACA---CATATGCTACAGAGCGAT---
----------------------------------------------------------------------------CATA
ATCATTGAAGAGCGTTTTGATGGCAACTTTAGTTATCGCGTGGATGTCAGTACGAT---AAATTTTGATGAAAAACAGAA
GTGCAGTGGAGTTGCCGTGCTCGAC------------CGACCAACATAAATTGTCATCAAAATCACTCTCAAATATCATG
CTCCCAACAATACGGCCGCCGGAACGGA----------------------------------------------------
-----------------------------------------------TACCTA--------GGAACGGAACGGATACGCC
GCCGCCGCC---TGGGTACTAACAA----TACGGCCGCCGCAGCAGAGCACCCGGCCGGCCCACATGTCAGCGGCC-ATG
TGGTCGTACTCCATCCCCGCGTCCACCTCTATAA-GTTGAGCACCGCATCTGCTGCCTCCCCTGAGCTCCCAGCGTCCTG
AGAGGAGAGCCACAGACTCGAGCGCCCCCCCATCCTCATCCTGCTCCCTAACCAAGAAGCGAGACGACGGTGACCAGTCC
CCAGAG------------CGCACTCCCACACCA-----------------------------------------------
---------------------------------------------------------TGGATCTCCAGACCTTCGTGCTG
AGGGTGACCATCCACTGCCATGGCTGCAAGAAGAAGGTCCGGAAGGTGCTCAAGAGCGTCGAAGGTACCAGCGTCGCCCT
CCTTAATTCTCCTCCCGCCGCTGCATTTTCG-----------GCTTAATTA----GCTTACTAAGTGGTCGTCGCGCGTT
TTGGTTGGGGTG------CTCAGGCGTGCAGGACGTGAAGGTGGATGCCCAGCTGCACAAGGTGATGGTGACCGGCACCG
TGGACGCCGAGACGCTCATCAAGCGGCTGCACAAGTCGGGCAAGCAGGCCCTGCCATGGCAACACAC---------GCCT
GCCAAGAATCCCGACCCTGCGCCGCCAGCCCCAGCCGACGCCCCCGCGCCGGCCG---------GGGACGGCAGCAAGGA
TGCTGCTGTGGCCGACAAGAAGCCGGCGG---------AGCCTGTGAAGGAGCCGCAGGCCGACAGCTCGGACAAGAAGC
CGGAGCAGGAGACGGCCCCCG---AGAAG---------------------------AAGCCTGAGGCGGAGAAGGAAGCA
GAATCTGAGAAGAAGGCTGACA---AAGAGGAGGAGGCAAAAC------CAAGCGACGAGGCAAAGCAAGACGGCGGCGA
GGGCG---------AG------CCCAAGGCAAAGGGCGCCGAGCCCGCGAGTGAGCCCGCTGCCGCCGCAAAGGAGGCCG
GCGGCAATGACGAGGCCGAGGCGAAGAAGAAACAGAGCAAGCCCAAGGACGC---------------CGATAGGTCCCTG
TCCC------------------ATGCGCCGAT------------GCACGCGCACCACGAATTCAACCCGTACGGCGCGCC
GCAGCCGGTGATGAGCTACAACATGGCGCAGCCGAGAGCGAGCGTGTCCCACTACGCGCCGCGGCCGGAGCAGGGCTACT
CGCTGCAGCAGCAGCAGGCCGGGTACTCCTCCTCCTCCA---------TGATGCAGCACCCACCGGCGCCGGCGCAGCAG
GCCTACTCCCAGCAGGCG---CAGCCAATGCAGCAATGGTCGCCGTCCTACCTCTACATGCCGTACCCGCACGCGTCGCC
GGAGTCCTACTACCAGGACTACTACAGCCCGCCCGGGACGCACGCGGCGCCGCCACCC---CTGCCGCCGCTCCAGGACT
CGTACCGCCTGTTCGACGACGAGAACCCCAACTCGTGCAGCGTCATGTGATC-GATGGCGGCTCCGGCCACCGCCGGAAA
AGTAGCCA---GAGGCGGCCTCATAATCGTATCGTAATAGAG----ACCTCTCTGGTTGTAGGTAGAGACAGTAGCTTGT
TACTCTCTTCGATTGGGA--------GGTCAAAGCTCTCCTTGACCAATCCTTTTTCTTTTTCTTCTTCTTCCTCTTTAA
TTTCTTCTTCTATTATTGCTACTATTACTGTTCTAAATAGAGCATGTAAT---TGTAATGAGAGAAC-CTTTACATGTA-
----GTAG---TAGCATCAATGAGATCTTCCACCCTACTAGTACC-ACTAGCATTTTGTATAATCTAAAAAGACATGAGA
GAGAGAAACATAAAAGATAACACGGATTATATATTATACATCTAAAGAATCTTCTCTAGAGGAATTAATTACTCAGTCCC
GTAATATGCGTTTTTGACACTATTGTAGTGTCAAAAACGCTCTTATATCACTGGACGGACGGAGGGAGTAGTAGAAAGGT
CGTGGTCTGTGCTCCAATCCAATCATGCATGTC----TAGAGGATATCCTTGCCGATTCTTGTGGCCAGCTCCCGAGCAG
CCTCTGAC------------------------------------------------------------------------
-------GATCGAT------------------------------------------------------------------
------------------------------------------------GAGGCCCAATCACCT--TCCCTTTGCCACCGA
TCAAGT-------------------------------------------------------------TTAGCACGATAAT
GATGTTTAATTAATTAGTGTGATGGCTCAGCAGCCCAACTTGTTTAGGTTGGTGCTCGGGGTGAGGCCAAGCTGGCCGGT
TTGTCTGAAGCCTTTTCATATAGCTCATCGGTCGCTCATGCCGAATGGTGTGGTGCTGGCCGGTTTGTTTGAAGGCTCTT
GAATATAAGCAAGAGGGCTGTGCTTG-CCCACATGTTAATGATT---------------TGATTTACCCATGCTGATCTC
AGCCTGGGTGATCATGCATGATTTAT-ATATAATGCTGGTACAGTAATAAGATACTGTTATGCTCATTAGAGTCAGCTAA
TCTGGTTTCATTATTGTGGGTTGCGGGGG------TACCATATATATAATAATGGAAAGGTGGTGGACAAATCGTGCCTT
GC
>chr5B_1
TAGGC-TTTTCTACACTAGTGCTACATGAAACTCATGTGAGATATACCCAAGATAATTTTCTTTAGGGATGGAAGAGTTT
AGAACAAATGAAGAGGTTTGTGATGTGAGAATTTGTGCATATTGTGCATTGTACGGTAAATCGTAAAGTAGAAAAGAAAT
CTTAATTCATTTAGAATATTTCTTTTTGGATAATTTAAGCATGAAAAAATTCTAAAACAAAGAAGAAT-GCATGCATTTT
G-ATGTTTCTCAGTATTATGCACTGCAAATCGTGAAGTAAAAAAAAAGAGTGGCATTTCATTCAGAAGAGAAATATATGG
ATCGT--AAGCATGAAAGATTTTAGAACAAACGAGAAATGCTTGTGTTTTGGGGTTTGTTCATTGTGATTAAGCTCAACC
ATGAGATATTTTATATACTACATGTGGCAGAATTTGTTGTTGTGCAGTTGATATCCAACGGTCAATAGTGTTTCAAATCT
GCTATATTTGCATTGGCAGATTGGCTTCATCGAAAGACCAATATTAAAAAT-TATAGTACATAGGCTACATGGTGATGTA
AAATTATTCGTATTATTTCTG--AAAAAGTCTGAATTGGATAGTAACATATATCTTACCGTCTTTAAAAAGGTAATCATA
ATCAGTGAACAGCGGTTTGATGACAACTTTAGTTACCGCGTGGATGCCAGTACTATGATAAATTTTGATGAAAAACAGAG
CTGCAGTGGAGTTGCCGTGCTTGCTGATTGCCATGCTCGACCAACATAAATTGTCATCAAAATCACTCTCAAATATCAAC
CTC-----------------------------------------------------------------------------
-----------------GGTACTGTAGAATTCTTTGACGGCGCCTGGTAGTACCACGGAACGGAACGGAACGGATACGCC
GCCGCCGCCGCCTGTGTACTAACAAACATTACGGCCGCAGCAGCAGAGCACCCGCCCGGCCCACATGTCAGTGGCCTCTG
TGGTCGTACTCCATCCCCGCATCCCCCTCTATAAAGTTGAGCACCGCATCTGCTGCCTCCCCTGAGTTCCCAGCGCCCT-
----CAGAGCCACAGACTCGAGCGCGCCCCCATCCTGCTCC------CCAACCAAGAAGCGAGACGACGGTGACCAGTCC
CCAGAGGC-----CAGAGCGCACTCCCATCCCA-----------------------------------------------
---------------------------------------------------------TGGATCTGCAGACCTTCGTGCTG
AGGGTGACCATCCACTGCCATGGCTGCAAGAAGAAGGTCCGGAAGGTGCTCAAGAGCGTCGAAGGTACTAGCGTCACCCT
CCTCC-TTCTCCTCGCGCCGCTGCATTTTCG-----------GCTTAATTA--TAACTAGCTAAGTGGTCGTCGCGCGTT
TTGGTTGGGATG------TTCAGGCGTGCAGGACGTGAAGGTGGATGCCCAGCTGCACAAGGTGATGGTGACCGGCACCG
TGGACGCCGAGACGCTCATCAAGAGGCTCAACAAGTCTGGCAAGCAGGCCCTGCCATGGCAACACAC---------GCCT
GCCAAGAATCCCGACCCTGCGCC---------AGCCGACGCCCCCGCGCCGGCCG---------AGGACGGCAGCAAGGA
TGCTGCTGTGGCCGACAAGAAGCCGGCGG---------AG---------GAGCCGCAGGCCGACAGCTCAGACAAGAAGC
CGGAGCAGGAGACGGCCTCGGAGAAGAAGCCGGAGCAGGAGACGGCCTCGGAGAAGAAGCCTGAGACGGAGAAGGAAGCA
GAGTCTGAGAAGAAGGCTGACA---AGGAGGAGGCG---AAAC------CAAGCGACGAGGCAAAGAAAGACGGCGGCGA
GGGCGCGGCGGCCGAGCCCAAACCCAAAGCAAAGGGCACCGAGCCCGCC------------GCCGCTGCAAAGGAGGCCG
GCG---ATGACGAGGGCGAGGCGAAGAAGAAACAGAGCAAGCCCAAGGACGC---------------GGATAGGTCCCTG
GCCCCAGCGCCGGCGCCGGCCCATGCGCCGAG------------GTACGCGCACCAGGAATTCAAC---------GCGCC
GCAGCCGGTGATGAGCTACAACATGGCGCAGCCGAGAGCGAGCGTGTCCCACTACGCGCCGCAGCCGGAGCAGGGCTACT
C---GCAGCAGCAGCAGGCCGGGTACTCCTCCTCCTCCTCCATGATGGTGACGCAGCACCCACCGCCACCGGCGCAGCAG
GCCTACTCCCAGCAGGCG---CAGCCAATGCAGCAATGGTCGCCGTCCTACCTCTACATGCCGTACCCGCACGCGTCGCC
GGAGTCCTACTACCAGGACTACTACAGCCCGCCCGGGACGCACGCGTCGCCGCCGCCC---CCGCCGCCGCTCCAGGACT
CGTACCGCCTATTCGACGACGAGAACCCCAACTCGTGCAGCGTCATGTGATCTGATCACGGCTCCGGCCACCGGCGGAAA
AGTAGAGGCG---GCCGTCCTCATAATCGTAATAGAGACG-G----ACCTCTCTGGTTGTAGGTAGAG----TAGCTTGT
TACTCTCTTCGATTGGGA--------GGTCAAAGCTCTCCTTGACCAATCCTTTTTCTTCTCA--CTTCTTCCTCTTTAA
TTTCTTCTTTTGTTATTGCTACTATTACTGTTCTAAATAGAGCATGTAAT---TGTAAT-----------TTACATGTAG
AA---TAG---TAGCATCAATGAGATCTTCCACCCTACTAGCACTTACTAGCATTTTGTATAAGCTAAAAA-ACATGAGA
GAGAGAAACATGAAAGAGAAAAACCGGATTA---TATACAGCTAAAGAATCTTCTCTAGATGAATTAATTAAT-------
--------------------------------------------------------------------TAGTAGAAAGGT
CGTCCTTTGTGCTCCAATCCAATCATGCATGTC----TAGAGTATATCCTTGTTGATTCTTGTGGCCAGCTCGTGAGCAG
CCTCTGACCAACCGCTTAAAAACGCGAGTCATCAACGAAAGACTTTGACAGAAGGTAAAAATAAATAAATGACTGCTCTC
CCGGTGTGATTGAT------------------------------------------------------------------
------------------------------------------------AAGGCCCCGTCACCTC-TCCTTTTGCCACCGA
TCAAGTTAGCACGATAATACCACGTGACACTCGTGGTAAGCAATCCAAACTTGATGAAAAAAAGAAGTTAGCACGATAAT
GATGTTTAATC----AGTGCGATAGCTCAGCAGCCCAACTTGTTTAGGCTGGTGCCTGGGGTGAGGCCAAGCTGGCCGGT
TTGTCTGAATGCTTTTCATATAGCTCATCGCTCAT-----------------------GCCGGTTTGTTTGAAGGCTTTT
GAATATAAGCAAGGGGGTGGTGCTTGTCCCTCGTGTTAATGATT---------------TG-------CATGCTGATCTC
AGCTTGGGTGATCATGTACGATTTAA-ATATAATACTAGTGCAGTAATAAGACA---TTATGCTCATTAGAGTAAGCTAA
ACTGGTTTGATTATTGTGGGTTGCTGGGG------TA---------TGATAATGGAAAAGTGGTGGCCAAATCGTGCTTT
GC
>chr5D_1
TAGGC-TTTTCTACACTAGTGCTAGATGAAACTCATGTGAAATATACCTAAGATAATTATCTTTAGGGATGGAAGAGTTT
AGAACAAATGAGGAGGTTTGTGATGTGAGAATTTGTGCACATTGTGCATTGTACGGTAAATCGTAAAGTAGAAAAGAAAT
TGTAATTCATTTAGAAGATTTCTTTTTGGATAATTTAAGCCTG-AAAAATTCTAAAACAAAGAAGAAATGCATGCATTTT
TTATGTTTCTGTGTATTATGCATTGTAAATCGTGAAGTAAAAAGAAAGTGTGTCATTTCATTCAGAAGAGAAATATATGG
ATAGTTAAAGCATGAAAGATTTTAAAACAAACGAGGAATGCTTGTGTTTTGGGGTTTGCTCATTGTGATTAAGCTCAACC
ATGAAATATTTTAAGTAGTACATGTGGCAGAATTTGTTGTTGTGCAGATGATACCCAACGGTTAATAGTGTT-CAGATTT
GCTATATTTGCACAGGTAGATTGGCTTCATCCAAAGACCAATATTAAAAAT-TATA---CATGGGCTACAGAGTGATGTA
AAATTATTCGTATTAATTCCGAAAAAAAGTCTGAATTGGATAGTAACGTATATCTGATCGCCTTGAAAACGGTAATCATA
ACCAGTGAACAGCATTTTGATGGCAACTTTAGTTATCGCGTGGATGCCAGTACGAT---AAAATTTGATGAAAAACAGA-
----------GTTGCCGTGCTTGCTGATTGCCATGCTCAGCCAACATAAATTGTCAACAAAATCACTCTCAAATATCATC
CTCCCACCAAACGTTTATAGGGGTGAGTGTATACGTGTATGTAACGCTTGCGTCCGTACTTTGTTAAAAAAACATGAACG
AAGCCACGGGCACGGCAGGTACCGTAGAATTCTTTCACGACGCCTGGTACCTA--------GGAACGGAACGGATACGCC
GCCGCCGCCGCCTGTGTACTAACGATAAATACGGCCGCCGCAGCAGAGCAGCCGCCCGGCCCATATGTCAGTGGCGTATG
TGGTCGTACTCCATCCCCGCGTCCACCTCTATAA-GTTGAGCACCGCATCTGCTGCCTCCCCTGAGCTCCCAGCGTCCT-
----GAGAGCCACATACTCGAGCGCCCCTCCATCCTCATCCTGCTCCCCAACCAAGAAGCGACACAACGGTGAGCAGTCC
CCAGAGGCCAGAGCAGAGCGCACTCCCATCCCATGGCGTCGGGAGAAGCGGCCATGCAGGTACACCATCTCGCCCCGTTT
CTAGCCCTTCCGTCCAAGGAATTCAGTTGAGTTGCATGCTCATGTGACATTCTTTCTTGGATCTGCAGACCTTCGTGCTG
AGGGTGACCATCCACTGCCATGGCTGCAAGAAGAAGGTCCGGAAGGTGCTCAAGAGCATCGAAGGTACTAGCGCCACCCT
CCTCC-TTCTCCTCGCGCCGCTGCATTTTCGTGTGGCTTTCGGCTTAATTGACTACCTAACTAAGTGGTCGT----CGTT
TTGGTTGGGATG------TTCAGGCGTGCAGGACGTGAAGGTAGACGCCCAGCTGCACAAGGTGATGGTGACGGGCACCG
TGGACGCCGAGACGCTCATCAAGAGGCTGCACAAGTCAGGCAAGCAGGCCCTGCCATGGCAACACAC---------GCCT
GCCAAGAATCCCGACCCTGCGCCGCCAACCCCAGCCGACGCCCCCGCGCCGGCCG---------AGGACGGCAGCAAGGA
TGCCGCTGTAGCGGACAAGAAGCCGGCGG---------AG---------GAGCCGCAGGCCGACAGCTCGGACAAGAGGC
CGGAGCAGGAGACGGCCTCGGAGAAGAAG---------------------------AAGCCTGAGACGGAGAAGGAAGCA
GAATCTGAGAAGAAGGCTGGCA---AGGAGGAGGAGGCGAAACCAAGGTCAAGCGACGAGGAAAAGAAAGACGGCGGCGA
GGGCGCGGCGGCCGAG------CCCAAAGCAGAGGGCACCGAGCCCGCGAGTGAACCCGCTGCCGCCGCAAAGGAGGCCG
GCG---ATGATGAGGGCGAGGCGAAGAAGAAACAGAGCAAGCCCAAGGACGC---------------CGATAGGTCCCTG
TCCCCAGCGCCGGCGCCGGCCCATGTGCCGAG------------GTACGCGCACCAGGAATTCAAC---------GCGCC
GCAGCCGGTGATGAGCTACAACATGGCGCAGCCGAGGGCGAGCGTGTCCCACTACGCGCCGCAGCCGGAGCGGGGCTACT
C---GCAGCAGCAG---GCCGGGTACTCCTCCTACTCCA---------TGATGCAGCACCCACCGGCACCGGCGCAGCAG
GCCTACTCCCAGCAGGCG---CAGCCAATGCAGCAATGGTCGCCGTCGTACCTCTACATGCCGTACCCGCACGCGTCGCC
GGAGTCCTACTACCAGGACTACTATAGCCCGCCCGGGACGCACGCGTCGCCGCCGCCC---CCGCCGCCGCTCCACGACT
CGTACCGCCTGTTCGACGACGAGAACCCCAACTCGTGCAGCGTCATGTGATGTGATGGCGGCTCCGGCGACCGCCGGAAA
AGTAGC---------CGGCCTCATAATCGT--CGTAATAGAG----ACCTCTCTGGTTGTAGGTAGAG----TAGCTTGT
TACTCTCTTC-----GATTGGGAGGTGGTCAAAGCTCTCCTTGACCAATCCTTTTTCTTCTTCTTC-TCTTCCTCTTTAA
TTTCTTCTTTTATTATTGCTACTATTACTGTTCTAAATAGAGCATGTAAT---TGTAATGAGA---C-CTTTACATGTAG
ACATGTAG---TAGCATCAATGAGATCTTCCGCCCTACTAGTACT-ACTAGCATTTTGTATAAGCTAAAACATAT-----
------------------AAAAAACGGATTA---TATACAGCTAAAGAATCTTCTCCAAAGGAATTAATTAAT-------
--------------------------------------------------------------------TACTAGAAAGGT
CGTCTTTTGTGCTCCAATCCAATCATGCATGTCCGTCTAGAGGATATCCTTGTTGATTCTTGTGGCCAGCTCGTGAGCAG
CCTCTCACCAAAAGCTTGTTGTGACTCTTTAAGTAATATATTTAGGTGGGGAAC---------AAAAAATGACTGCTCTC
CCGGTATGATTGATTCTTATCAAACAGGGGCCAATTAAGCCGCCAACTCTTACAATGACAGCAAATGGGACCTTACCGAA
GCCGTAGTCCGTAGATTTACTCTTTAGATAACTCCCCGGACGATCGATAAGGCCCAATCACCTCTTCCTTTTGCCACCGA
TCAAGTTAGCACGATAAT--------------------------------------------------------------
GATGTTTAATC----AGTGTGATAGCTCAGCAGCCCAACTTGTTTAGGTTGGTGCTTGGGGTGAGGCCAAGCTGGCCGGT
TTGTTTGAAGCCTTTTCATATAGCTCATCGCTCACTCATGCCGAATGG-----TGCTGGCCGGTTTGTTTGAAGGCTTTT
GAATATGAGCAAGGGGGTTGTGCTTG-TCCACATGTTAATGATTTGATTTACCCCTGCATG-------CATGCTGATCTC
AGCTTGGGTGATCATGTATGATTTAAAATATAATACTAGTACAGTAATAAGATA---TTATGCTCATTAGAGTAAGCTAA
TCTGGTATCATTATTGTGGGTTGCGGGGTATTATATA---------TAATAATGGAAAAGTGGTGGACAAATCATGCTTT
GC
>chr4D_7
------TTTTCTGCGCTAGTGCTACATGAAACTCATGTGAAATATACCCAAGATAATTGTCTTTATGTACAGAAGAGTTT
AGAACAAATGAGGAGGTTTGTGATGTGAGAATTTGTGCACATTGTGCATTGTACGGTAAATCGTAAAGTAGAAAAGAAAC
TGTAATTCATTTAGAAGATTTCTATTTGGATAACTTAACCATG-AAAAAATCTAAAACAAAGAAGAAATGCATGCATTTT
G-ATGTTTCTGCGTATTATGCATTGTGAATCGTGAAGTAAAAAAAGAGAGTGTAATTTCATTTAGAAGAGAAATATTTAG
ATAGTTAAAGCATGAAAGATTTTAGAACCAATGAGAAATGTTTGTGTTTTGGGGTTTGTTCATTGTGATTAAGCTCAACC
AGGAAATATTTAAAATAGTACATGTGGCAAAATTTATTGTTGTGCAGATGATATCCAACGGTCAATAGTGCC-CAGATAT
GCTATATTTGCACTGGCAGATTGGCTTCATCCCAAGACCAATATTAAAAAAATATA---CATAGGCTACATAGTGAT---
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>chr7B_1003
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----------------------------------------------------------GGATCTGCAGACCATCGTGCTG
AGAGTGACCATTCACTGCCATGGCTGCAAGAAGAAGGTCCGGAAGGTGCTCAAGAACATCCAAGG---TACCGTCACTCT
CTTCT-TTGATCGTCGCG---TGCGTTTCCGTTTGCTTTTGGGCTTATAATTGACCAAAGTGTC-----CGT----CGTT
TTGGTTGGGATG------TTCAGGCGTGCAGGACGTCAAGGTAGATGCGCAGCAGCACAAGGTGACCGTGACGGGCACCG
TGGACGCCGAGACGCTCGTCAAGAGGCTGTACAAGTCAGGCAAGCATGCCCTGCCATGGCAACACACACCCGCCGCGCCT
GCCAACAGCCCCGAGGCTGCGCCCGCAACT------GAGGCCCCGGCGCCGGCCCCTCCGGCCAAGGACGGCAGCAAGGA
TCCTGCTGCGGCGGACAAGAAGCCAGCGGAACCTGTGAAG---------GAGCTGCATGCCGACAGCTCGGATAAGAAGC
TGGAGCAGGAGGAGACGTC--CC-------------------------CGGAGAAGAAGCCTGAGACGGAGAAGGAAGCA
GAGTGTGAGAAGAAGGCTGAGA---AAGACGCGGCG---AAAC------CAAGCGATGAGGCAAACAAAGACGGCGGCGA
TGGCGCGGCGACCGAG------CCCAAGGCAAAGGGCACCGAGCCCGAGAGTGAATCCGCTGCCGCCACAAAGGAGGCCG
GCG---ATGACGAGGCCGAAGACAAGAAGAAACAGAGCAAGCCCAAGGACGCAC------CTGCGCCGGACAGGTCCCTA
TCTCCGTCGCCGGCGCAGGCGCACGCGCAGCAGGAGTTCAACCCGTAC---------------AGC---------GCGCC
ACAGCCTGTGATGA-------------GCAGCTGAGAGCGAGCGTGTCCTACTACGCGCCGCAGCCAGAGCAGAG-----
-------------------------CTACTCCATGTCCA---------TGCAGCAGCAACCGCCGCACC---CGCAGCAG
GCCTACTCCCAGCAGGCGGCGCAGCCAATGCAGCAGTGGTCGCCGTCGTACCTTTACATGCCGTACCCGCACGCGTCGCC
GGAGTCCTACTACCAGGACTACTATAGCCCGCCCGGGACGCACGCGCCGCCGCCTCCGCATCCGCCGCCGCTGCAGGACT
CGTACCGCCTGTTCGACGACGAGAACCCAAACTCGTGCCGCGTCATGTGAT-----------------------------
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>chr4D_1033
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--------CATCCACTGCCATGGCTGCAAGAAGAAGGTCCGGAAGGTGCTCAAAAACATCCAAGGCAGGTCCTCGCCCCA
ATTCTG------------CGATGCATTTTCGTGTGTCTTCCGGCTTAATTA----ACTAACCAAGTGGTCGTCGCGTGTT
TTGGTTGGGATGTTCAACTTCAGGCGTGCAGGACGTGAAGGTAGATGCCCAGCTGCACAAGGTGATGGTGACGGGCAGCA
TGGACGCCGAGACGCTCATCAAGAGGCTCTACAAGTCAGGCAAGCAGGCCCTGCCATGGCAACACAT---------GCCT
CCCAAGAATCCCGACCCTGCGCC---------A------------------GCCG---------AGGACGGCAGCAAGGA
TGCTGCTGTGGCCGACAAGAAGCC------------------------------GCAGGCCGACAGCTCCGACAAGAAGC
CGGAGCAGGAGAAAGCCCGGACC-------------------------CAGAGAATAAGACTGAGACGGAGAAGGAAGCA
GAATCTGAGAAGAAGGCTAAGAATCAGGAGGAGGCG---AAAC------CAAGCGACGAGTCAAAGAAAGACGGCGGTGA
GG------------------------------------CCGAGCCCGCGAGTGAAC---------CCGCAAAGGAGGCCG
GCA---ATGACGAGGGCGAGGAGAAGAAGAAACAGAGCAAGCCCAAGGACGGCGCAGCCGCTGCGGCGGATAGGTCCCTG
TCCCC-----CAGCGCCGGCCCATGCGCCGAG------------GTAC---------------AAC---------GCGCC
GCAACCGGTGATGAGCTACAACATGGCGCAGCCGAGAGCGAGCGTGTCCTCCTACGCGCCGCAGCTGGAGCAGGGCTACT
C---GCAGCAGCAG---GCCGGGTACTCCTCATCCTCCTCCTCCATGATA------------------------CAGCAG
GCCTACTCCCAGCAGGCG---CAGCCAATGCAGCAATGGTCGCCAGCGTACCTCTACATGCCGTACCCGCACGCGTCGCC
CGAGTCCTACTACCAGGACTACTACAGCCCACCGGGGACGCACGCG---------------CCGCCGCCGCTCCAGGACT
CGTACCGCCTCTTCGACGACGAGAACCCCAACTCGTGCAGCGTCATGTGATC-----GCGGCTCCGGCCACCGGTGGGAA
AAGTAGCCAAGGAGGCAGCTTCATACTCTAATCATGATAGAGACGAACCTCTCTGGTTGTAGGTAGAG----TAGCTTGT
TACTCTCTTCGATTTGATTGGGAGGTCAAG------------GACCAATCCTTTTTCTTCTTCCTC-T-------TTTAA
TTTCTTCTTTTATTATTGCTGCTATTACTGTTCTAAATAGAGCATGTAATACTTGTAATGAGATACGACTTTACATGTA-
----GTAGCACTAGCATCAATGAGATCTTCCACCCTACTAGTACT-ACT-------------------------------
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>SNPs
-----S---------SS---------------------------------------------------------------
----------S---------------------------------------------------------------------
--S------S-----------S------S-S--------S----------------------------------------
----------------S--------------------------------------------------------------S
------------------S-------------------SS--------------------S-------------------
------------S-----------------------------------------------------------SS------
-------------S------------------------SS--S-----------S--------S---------S------
--------------------------------------------------------------------------------
----S----S------------------------------------S--------------------------------S
S--------------------S-SS------------------------------------------------------S
------S---SSSSSSSSSS--SSSS-S----------------------------------------------------
--------------------------------------------------------------------------------
--------------S---------------------------------------S----------------S--------
-------------------------------------------------------------------------------S
SSSS--------------------------------------------S-------------------------------
----------------------------SS--------------------------------------------------
----------------------------------------------------------------S---------------
--------------------------------------------------------------------S------S----
---SSS-------------------------------------------------S--S---------------------
---------S--------S-------------------------------------------------------------
-----------------------S-------------S------------------------------------------
---------------------------S------------------------------------S---------------
----------------------------------------SSSSSSSSS-------------------------------
-------------------S---------------------------------------------S--------------
--------------------------------------S---------------------------S-------------
-------------------------------------S----------------S-------------------------
---SSS--------------------------------------------------------------------------
-------------------------------S-------------S----------S---------SSSSSSSSS-----
--------------------------------------------------------------S-----------------
-SSS---------------------------------------------------------------S------------
--------------------------------------------------------------------------------
----------------------------------------------S-------S-------S-----------------
--------------------------------------------------------------------------------
-------S------------------------------------------------------------SSSS--------
-----------------------------------------------------------S--------------------
---------S-----------------------------------------------------S-S--------------
--------------------------------------------S------------------S-------S--------
-----------S-----S--S-SSSSSSS--SSS------S------------------------------S-SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------
---SS-S---------------------------------------------SS------------------SS------
--------------------------------------------------------------------------------
----------S---------------------------------------------------------------------
------------------------------------------------S-------------------S-----------
--------------------------------------------------------------------------------
----------SSSSS--------S--------------------------------S-----------------------
------------------------------S--S--------------SSSSS------------------------S--
-------------S---S-------------------------------------------SSSSSSS------------
---S------------S--------S--------S--S----------------SSS----------------S------
-------------------------------------SSSSSSSSS------------S------------------S--
--
>forward_816
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----------------------------------------------------------------------------CATG
CTCCCAACAATACGGC----------------------------------------------------------------
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>reverse_3291
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----------CGATGAGGCCCAATCACCTT--------------------------------------------------
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--
