>input_sequence_60313
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-----------------------------------------ATGGCAGGAGAAATGGCGATGGAGAAGCGTCGGCGTCGC
CACATACCACCGGCGGTCGCCTCCTCCTCTTCGACCCCCGCCT---CCTCCGGCCACACGCCGTCCCCTCCGCCGGACCT
CCTCCCGGACATCGCCCGTCGCCTCACCTCCCTGGAGGACTTCTTCTCCCTCCGCGCCTCCTGCCGCGACTACCGCGCGC
TCCTCCCGGCGTCCCGCCCCCACCTCGCCTCCCAGGCCCCGCTCCTCCCCGTCTCCCTCTACCCCTCCTTCGCCGAGGCG
CTCTTCCACCCCCGCCTCCGCCGCCTCCACCGCTTCCGCCTCCCCTGGGGCCACCACCTACCGCCCTCCCGCCTCACCCT
CCTCTACGCCCACGGCTTCCTCGTCACCGCCACCACCGCGGCCGCCCAGTACCCCCCCAGGCTCCTCCTCCTCCACCTCT
TCACCGGCGACCAGCAGCGCCTCCCCAGGGTCCCCACCCCCTTCTCCCGGGCCATCCTCTCTGCCGACCTCCTCGTCGTG
CTCTTCCTGCCCGGCAGGTCCACCGTCCAGCACTGCCGCCCCGGGGATGCGCTCTGGCGTGTGGCCACCGCCGATGCGCC
CCACGTGTTCGACGATTTGATCTTCGTTGACGCCACCCTCTACGCCCTGGTTGGCCTCCGTCTTGCCACGCTGGAGCTGT
CCGAAAGTTCGCTGGAGTTGTCATTCCTTGGAGGAGAGCATGATGAGGAGAACCGGCCGGTGGGGGAGCGGTTCATGCTC
GGGGAGTGCGACGGCGAGGTGTTGCTCATCAGCGAGGAACAGGCAGAGACGGTTGTGTACCGTGTTTTCCGGTGGGTGCC
CGGGGAGGGAAAATGGGTGATGATAACAAGCTTGGGTGGGCGAACATTGTTTCTTGGGTTCCACGGATTCGCGGCTTGCA
TCGGCCCAGGTTTCCCTGGGATTCGAGGTGATTGCATATATGCAGCTGGGCGACGCTTGGGCGAATGGTACGAGTATTCC
TTGGTTAATGGAACTTGTGATGTCTGCTATGCTGAATATGCGGGCGCACCACCCCTGAACAGCGATTCACCTCTCAGACC
TCCGGTTTGGGTCTTTCCCAGCTTGATGCCAGCCTGA-------------------------------------------
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--------------
>chr5B_1_TraesCS5B01G316700
CAAATCCGGCCATCCGAGCCCTTTTCCCTCGGATCCCATCCTCAGCGCCGCTAGTCCCGCCGTCAGCGAGGAGCTCACCC
CGGACGCCATTGATGCTCGAGAATGTCTTCCGAGCAAGGAGAAGCATCCCAACGACTGGCCCCCCCTCTCCCGCAATGGG
ATGCTTCCAGCCGGCCCAAGTTGGGAACATGCCTGCAGTCCCACCAGACGGGCTGCCAGCATACTGTAGCGCTAGGAGGA
GCTGTAGGGCTGTCTTTCCCAGCGTCAGGTGAAGCGAGAAGCCAAGCAAGAAGCTGAGGGTGTGTTTGGTTGATGTTCTC
GTCGCTTCGTGCCTGGACTAGACCCTGCTTGGAAACTGTCTGGAGAATGTTTGGTCCAAGTCCACAAAAGTTGATGCTCG
CCTGGCCTGGTAATTTGAAAACTTTGCTTAACCTGGCTGGTGCCCAGGCACCTTGATTAGCCTGGCCGAATGGGTCACTT
GGGTGCTGCCTGGCAACAATTCTTACTTTAATTAGCTGGATTTTTTGTGGGCCAGGTCTGACACAAATGCCTTTTCCATC
GTAAACCTTTTTTAGCTAGATATGCAACCAAACACTTCATGTCTAGGCAGACACAAAATTGCTAGTATCCAGGCTGGCTC
CAGGCACCAATTCATGTGAACTAAACGCGACCTGAATCTGAGAAGTTTCTGAGAAGTTGCAGGATCAGAATATGCCCTTA
GTACAATTTTATTTTGTACTAAACCAACGTCAATTAATTTGGATTGAAGGAAGTAGTAGTTTTTTCTTCTTACATTTTTT
AGGGGAAGTTTTTTCTTTTTACATATTATTTCTTTTTGAGAATCGGATACGATATGTTGCTGGACAAGAAAAACATTGGC
CATGACATGGGCCATGGGCTGCGAGCCCACAGCCAATGACGGTGCGGGAGAGTCTTCCCCGTTTCTATCGGTCTCC-TTG
GGTGACAGGGAATTCCCAGAAGGGGAAAAGAAAGCTGAAAAATGGCAGGAGAAATGGCGATGGAGAAGCGTCGGCGTCGC
CACATACCACCGGCGGTCGCCTCCTCCTCTTCGACCCCCGCCT---CCTCCGGCCACACGCCGTCCCCTCCGCCGGACCT
CCTCCCGGACATCGCCCGTCGCCTCACCTCCCTGGAGGACTTCTTCTCCCTCCGCGCCTCCTGCCGCGACTACCGCGCGC
TCCTCCCGGCGTCCCGCCCCCACCTCGCCTCCCAGGCCCCGCTCCTCCCCGTCTCCCTCTACCCCTCCTTCGCCGAGGCG
CTCTTCCACCCCCGCCTCCGCCGCCTCCACCGCTTCCGCCTCCCCTGGGGCCACCACCTACCGCCCTCCCGCCTCACCCT
CCTCTACGCCCACGGCTTCCTCGTCACCGCCACCACCGCGGCCGCCCAGTACCCCCCCAGGCTCCTCCTCCTCCACCTCT
TCACCGGCGACCAGCAGCGCCTCCCCAGGGTCCCCACCCCCTTCTCCCGGGCCATCCTCTCTGCCGACCTCCTCGTCGTG
CTCTTCCTGCCCGGCAGGTCCACCGTCCAGCACTGCCGCCCCGGGGATGCGCTCTGGCGTGTGGCCACCGCCGATGCGCC
CCACGTGTTCGACGATTTGATCTTCGTTGACGCCACCCTCTACGCCCTGGTTGGCCTCCGTCTTGCCACGCTGGAGCTGT
CCGAAAGTTCGCTGGAGTTGTCATTCCTTGGAGGAGAGCATGATGAGGAGAACCGGCCGGTGGGGGAGCGGTTCATGCTC
GGGGAGTGCGACGGCGAGGTGTTGCTCATCAGCGAGGAACAGGCAGAGACGGTTGTGTACCGTGTTTTCCGGTGGGTGCC
CGGGGAGGGAAAATGGGTGATGATAACAAGCTTGGGTGGGCGAACATTGTTTCTTGGGTTCCACGGATTCGCGGCTTGCA
TCGGCCCAGGTTTCCCTGGGATTCGAGGTGATTGCATATATGCAGCTGGGCGACGCTTGGGCGAATGGTACGAGTATTCC
TTGGTTAATGGAACTTGTGATGTCTGCTATGCTGAATATGCGGGCGCACCACCCCTGAACAGCGATTCACCTCTCAGACC
TCCGGTTTGGGTCTTTCCCAGCTTGATGCCAGCCTGAGAAAGGTTACCCAGATTATTGAAGAACAGTGATGCTGACATGA
AGTAAGAAAAGGTAAATTTGATCCCTGGGCTTGCTGTTGCTAAATTTTACCATGTCAATTCTGTATAATAGACACTTCAT
GAAGATCTTTTGTGTGCCTGTTAACTGCTATCTT-GGTTGAGGTAGTGAACACTAACAGAACACACTTGTTGAACTTGAT
TATAGGAAATAATGATACTTTGGTGAATGCAGACAATATTTATTTAGGTAT--TATGCAATTCGTCGCAATCTCTCTGAA
CTCTGAAGCTTATTTAGCCTCTTTCTTGCCGTACTGATTTGAGATTGCTGCAATAGTGAGTAAGGTCAGGTATCATATGG
AAGAACTGTGCCACCACCTTTTGTGAAATTTCCAAATATCCCAGGAATTCAGATCAGATGGTTATACTTACACGTTTCTT
GGTAGTGTATGGTTAAGAGTCTTCATAACATATGAATGTATCGCCTGTGTAGACATATGTACAATGGGGAATATTTCAGA
GTTGGAGGCAATATTGAGATAAATTTGTATCATCTTAGAGGAGTTTAGTCATGGATGTTGGCCGGCTTCTGTTTTCAGAT
TAAACCAGTGGCCCTCTTAACTTGTTTGTTTCTGAATGTAATAATGCGTGTAATGCTGCAAATCCTGTAGAATTGTTACA
GTTAGTTCTATGGTAGCAAGAAGACCGATAATAGC------GAACATTGAAACATTAG-------TATTC-TTATATGAG
CTGTACTCTTAATACTAGGAGTTGTATTCCTGCTAGAAACAGTTAAGACTTAGACTACACTCTACTTTTAAACCCATTTA
AGAGTAGAACTATCATAGAGAAGTCACATTCGAACAGGTTCAAATTTGGTTACATGATTACCTGCCCTCAAAAGTCACGT
TGGTGAGATAAGAGGAATCCAAACAATTCCTAATTTATTTACACGGTTCCTACAGATATGTACCAGAAGCTTATGTTTGT
GCAAACTTGTGTGA
>chr5D_846
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---------------------------------------------GATACGATATGTTGCTGGACAAGAAAAACAT----
--------GGGCCACGGGCTGCGAGCCCACAGCCAATGACGGTGCGGGAGAGTCTTCCCCGTTTCTATCGGTCTCC-TTG
GGTGACAGGGAATTCCCAGAAGGGGAAAA-AAAGCTGAAAAATGGCAGGAGAAATGGCGATGGAGAAGCGTCGGCGTCGC
CACGCGCCACCGGCGGTCGCCTCCTCCTCTTCGACCCCCGCCGAGGCCTCCGGCCACACGCCGTCCCCTCCGCCGGACCT
CCTCCCGGACATCGCCCGTCGCCTCACCTCCCTGGAGGACTTCTTTTCCCTCCGCGCCTCCTGCCGCGACTACCGCGCCC
TCCTCCCGGCGTCCCGCCCCCACCTCGCCTCCCAGGCCCCGCTCCTCCTCGTCTCCCTCTACCCCTCCTTCGCCGAGGCG
CTCTTCCACCCCCGCCTCCGCCGCCTCCACCGCTTCCGCCTCCCCTGGGGCCACCACCTGCCCCCCTCCCGCCTCACCCT
CCTCTACGCCCACGGCTTCCTCGTCACCGCCACCACCGCGGCCGCCCAGTACCCCCCCAGGCTCCTCCTCCTCCACCTCT
TCACCGGCGACCAGCAGCGCCTCCCCAGGGTCCCCACCCCCTTCTCCCGGGCCATCCTCTCTGCCGACCTCCTCGTCGTG
CTCTTCCTGCCCGGCAGGTCCACCGTCCAGCACTGCCGCCCCGGGGATGCGCTCTGGCGTGTGGCCACCGCCGATGCGCC
CCACGTGTTCGACGATTTGATCTTCGTTGACGCCACCCTCTACGCCCTGGTTGGCCTCCGTCTTGCCACGCTGGAGCTGT
CCGAGAGTTCGCTGGAACTGTCATTCCTTGGAGGAGAGTATGATGAGGAGAACAGGCCGGTGGGGGAGCGGTTCATGCTC
GGGGAGTGCGACGGCGAGGTGTTGCTCATCAGCGAGGAGCAGGCAGAGACGGTTGTGTACCGTGTTTTCCGGTGGGTGCC
TGGGGAGGGAAAGTGGGTGATGATAACAAGCTTGGGTGGGCGAACATTGTTTCTTGGGTTCCACGGATTCGCGGCTTGCA
TCGGCCCAGGTTTCCCTGAGATTCGAGGTGATTGCATATATGCTGCTGGGCGACGCTTGGGTGAATGGTTCGAGTATTCC
TTGGTTAATGGAACTTGTGATGTCTGCTATGCTGAATATGTGGGCGCACCACCCCTGAACAGCGATTCACCTCTCAGACC
TCCGGTTTGGGTCTTCCCCAGCTTGATGCCAGCCTGAGAAAGGTTACCCAGATCATTGAAGAACAGTGATGCTGACATGA
AGTAAGAAAAGGTAAATTTGATCCCTGGGCTTGCTGT-GCTAAAATTTACCATGTCAATTCTGTATAATAGACACTTCAT
GAAGATCTTTTGTGTGCCTGTTAACTGCTATCTT-GGTTGAGGTAGTGAACACTAACAGAACACACTTGTTGAACTTGAT
CATAGGAACTAATGATACTTTGGTGAATGCAGACAATGTTTATTTAGGTAT--TATGCAATTCGTCGCAATCTCTCTGAA
CTCTGAAGCTTATTTAGCCTCTTTCTTGCCTTACTGATTTGAGATTGTTGCAA-----------GTGAGGTATCATATGG
AAGAACTGTGCCAGCACCTTTTGTCAAATTTCCAAATATCCCAGGAATTCAGATCAGATGGTTATACTTATACGTTTCCT
AGTAGTGTATGGTTAAGAGTCTTCATAACATATGAATGTATCACCTGTGTAGACATATGTACAATGGGGAATATTTCAGA
GTTGGAGGCAATATTGAGATAAATTTGTATCATCTTAGAGGAGTTTAGTCATGGATGTTGGCCGGCTTCTGTTTTCGGAT
TAAACCAGTGGCTCTCTCAACTTGTTTGTTTCTGAATGTAGTAATGCATGTAATGCTGCAAATCCTGTAGAATTGTTACA
GTTAGTTCTATGGTAACAAGAAGACCAATAATAAC------CAACATCGAAACATAAGAGTGTACTATTC-TTATATGAG
CTGTATTCTTAATACTAGGA----------------------------CTCAGACTACACTCAACTTTTAAACCCATTTA
AGAGTAAAACTATCGTAGAGAAGTCACAGTCGAACAGGTTCAAATTTGGTTACATGATTACCTGCCCTCAAAAGTCACGT
TGGTGAGATCAGAGGAATCCAAACAATTCCTAATTTATTTACATGGTTCCTACAGATCTGTACCAGAAACTTATATTTGT
GCAAACTTGTGTGA
>chr5A_905
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------------------------GCCCACAGCCAATGACGGTGCGGGAGAGTCTTCCCCGTTTCTATCGGTCTCCTTTG
GGTGACAGGGAAAA---AGAAAGTGAAAA-AGAGCTGAAAAATGACGGGAGAAATGGCGATGGAGAAGCGTCGGCGTCGG
CACGCACCACCGGCGGTCGCCTCCTCCTCTTCGTCGACCGCCGAGGCCTCCGGCCACACGCCGTCCCCTCCGGCAGACCT
CCTCCCAGACATCGCCCGTCGCCTGACCTCCCTGGAGGACTTCTTCTCCCTCCGCGCCTCCTGCCGTGACTACCGCGCCC
TCCTCCCGGCGTCCCGCCCCCACCTCGCCTCCCAGGCCCCGCTCCTCCTCGTCTCCCTCTACCCCTCCTTCGCCGAGGCG
CTCTTCCACCCCCGCCTCCGCCGCCTCCACCGCTTCCGCCTCCCCTGGGGCCACCACCTGCCCCCCTCCCGCTTCACCCT
CCTCTACGCCCACGGCTTCCTCGTCACCGCCACCACCGCGGCCGCCCAGTACCCCCCCAGGCTCCTCCTCCTCCACCTCT
TCACCGGCGACCAGCAGCGCCTCCCCAGGGTCCCCACCCCCTTCTCCCGGGCCATCCTCTCTGCCGACCTCCTCGTCGTG
CTCTTCCTGCCCGGCAGGTCCACCGTCCAGCACTGCCGCCCCGGGGATGCGCTCTGGCGTGTGGCCACCGCCGATGCACC
CCACGTGTTCGACGATTTGATCTTCGTTGACGCCACCCTCTACGCCCTGGTTGGCCTCCGTCTCGCCACGCTGGAGCTGT
CCGAAAGTTCGCTGGAGCTGTCATTCCTTGGAGGAGAGTATGATGAGGAGAACAGGCCGGTGGGGGAGCGGTTCATGCTT
GGGGAGTGCGACGGCGAGGTGTTGCTCATCAGCGAGGAGCAGGCAGAGACGGTTGTGTACCGTGTTTTCCGGTGGGTGCC
TGGGGAGGGAAAGTGGGTGATGATAACAAGCTTGGGTGGGCGAACATTGTTTCTTGGGTTCCATGGATTCGCGGCTTGCA
TCGGCCCAGGTTTCCCTGAGATTCGAGGTGATTGCATATATGCAGCTGGGCGACGCTTGGGTGAATGGTTCGAGTATTCC
TTGGTTAATGGAACTTGTGATGTCTGCTATGCTGAATATGTGGGCGCACCACCCCTGAACAGCGATTCACCTCTCAGACC
TCCGGTTTGGGTCTTCCCCAGCTTGGTGCCAGCCTGAGAAAGGTTACCCAGATCATTGAAGAACAGTGATGCTGACATGA
AGTAAGAAAAGGTAAATTTGATCCCTGGGCTTGCTGTTGCTAAAATTTACCATGTCAATTCTGTATAATAGACACTTCAT
GAAGATCTTTTGTGTGCCAGTTAACTGTTATCTTTGGTTGCGGTTGTGAACACTAACAGAACACACTTGCTGAACTTGAT
CATAGGAACTAATAATACTTTGGTGAATGCAGACAATATTTATTTAGGTATTATATGCAATTCGTCGCAATCTCTCTGAA
CTCTGAAGCTTAATTAGCCTCTTTCTTGCCGTACTGATTTGAGATTGCTGCAATAGTGAGTAAGGTCAGGTATCATATGG
AAGAACTGTGCCAGCACA-TTTGTCAAATTTCCAAATATCCCATGAATTCAGATCAGAT-----TAGTTATACGTTTCCT
AGTAGTGTATGGTTA-GATTCTTTATAACATATGAATGTATCACCTGTGTAGACATATGTACAATGGGGAATATTTCAGA
GTTGGAGGCAATATTGAGATAAATTTGTATTATCTTAGAGGAGTTTAGTCATGGATGTTGGCCGGCTTCTGTTTTCAGAT
TAAACCAGTGGCTCT---AACTTGTTTGTTTCTGAATGTAATAATGCGTGTAATGCTGCAAATCCTGTAGAATTATTACA
GTTAGTTCTATGGTAGCAAGAAGACCAATAATAATAATAATCAACGTCGAAACATAAGAGTGTACTATTCTTTATATGAG
CTGTATTCTTAATACTAGGAGTTGTATTCCTGCTAGAAACAATTA-GACTTAGACTACACTCAACTTTTAAACCCATTTA
AGAGTAAAACTATCGTAGAGAAGTCACATTCGAACAGGTTCAAATTTGGTTACATGATTACCTGCCCTC-AAAGTCACGT
TGGTGAGATAAGAGGAATCCAAACAATTCCTAATTTGTTTACATGGTTCCTACAGACATGTACCAGAAGCTTATGTTTGT
GCAAACTTGTGTGA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------SSSS
SSSSSSSS------S-----------------------------------------------------------------
-----------------------------S--------------------------------------------------
---SS-------------------------------------S-------------------------------------
------------------------------------------------------------------------------S-
------------------------------------------------S-------------------------------
-----------------------------------------------------------S--S-----------------
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-----------------S--------------------S--------------S--------------------------
--------------------------------------S-----------------------------------------
S-----------S-------------------------------------------------------------------
------------------S------------------------------------------S-------S----------
----------------------------------------S---------------------------------------
---------------S-------------------------------------S--------------------------
--------------------------------------------S-----------------------------------
--------------------------------------------------------------------------------
S-------S-----------------------------------------------------------------------
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-------------S----------S---------------------------------------------S-------S-
S-----------------------------------------S-------------------------------------
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------------S----S--------------------------------------------------------------
--------------------------S------S-------S-----S-------S------------------------
-----S-----------------------------------S---S----------------S-----------------
------S-------S-----------------------------------------------------------------
-------------------------------------------S------------------------------------
--------------
>forward_234
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------------------------------------------------------GCCAGCATACTGTAGCGCTA------
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>reverse_1719
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--------------------------------------CATGATGAGGAGAACCGGCC----------------------
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>forward_252
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------------------------------------------------------------------------TAGGAGGA
GCTGTAGGGCTG--------------------------------------------------------------------
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>reverse_1799
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--------------------------------------ACAGGCAGAGACGGTTGTG-----------------------
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>forward_470
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--------------------------------------------------CCTTGATTAGCCTGGCCGAA----------
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>reverse_1841
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CGGGGAGGGAAAATGGGTG-------------------------------------------------------------
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>forward_473
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-----------------------------------------------------TGATTAGCCTGGCCGAATGG-------
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>reverse_2096
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---------------TCCCAGCTTGATGCCAGC-----------------------------------------------
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>forward_550
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--------------------------------------------------GCCAGGTCTGACACAAATGC----------
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>reverse_2551
--------------------------------------------------------------------------------
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----------------------------------------------------------------------CACGTTTCTT
GGTAGTGTATGGT-------------------------------------------------------------------
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