>input_sequence_60301
--------------------------------------------------------------------------------
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-------------------------------------------------ATGTCGACCCCGGGCGCCGCCTACTACGCTT
CCCTCGCGCGCAAGCAGTACTTCTGCTACCAATGCAACCGCACCGTCCTCATCGCCGCCTCCGCCGCGGCCGCCGGCGAG
CTCTCATGCCCCGACTGCCGCGGGGACTTCCTGGAGGAGGTCACCGTCCCCGCCCCCACCATCCTCCCCTTCCCCTTCGC
CTTCCCCCCTATGATGCCCACCGCCTCCTCCCCGTCCCGATCCTCCTCCTCCTCCACCGCCGCGCCCCCCTCCAGCGACC
TCTCCAACTTCCTCACCAGCATCCTCGACCTCCAGGAGGGCCGCCGCGTTAGGTCCAGGAGCGGGAGCGGTGCCGCCTCG
GCCGCTGGCACGGCCACGCCTGAGAACGAGCCGGAGTCCTTCGACCCGCTCGTGTTTTTCCAGAACTACATCCACACCCT
CATGGAGGGGGGCGCCAACATCCAGGTGCTCCTCGACGACGCCAGCGTCAACCTCGCCCCTGGCCCAGGCGGCCGTGCCG
GTGGGACAAGCTACGGGGACTACTTCGTCGGCCCGGGACTGGAGCAACTCATCGAGCAGCTCGCCGAGAACGATCCCAAC
CGCTACGGCACGCCGCCGGCTGCCAAGTCCGCCCTGACCACTCTTCCTGACGTCGTTGTCACAGATGCCATGGTTGCGGC
GGCAGAGGGTGCCGAGTGTGCTGTGTGCAAGGAAGATTTCTCACCTGGAGATGGGGCCAAGCAGATGCCCTGCAAGCATA
TCTACCACGCAGATTGCATTGTACCCTGGTTGGAGCTCCACAATTCGTGCCCCATTTGTCGCTTTGAGCTGCCCACCGAT
GATCCTGATTATGAGGGCAATAAGGCCTCAAACCCACAGTCAGCTGTTGGTATCGCTGCTGCTGCTGCTGCATCTGGGAG
CTCTGGTGCTGCTGAGGAAGGAGGGGAGGAGAGTGGGGAGACTGCAAGGGTGGTGGAAAGGAGATTCAATGTGTCATTGC
CATGGCCGTTTGGTGGATCGGCAGGTCAAACACCACAGCAAGATGGGAACAATGCCGGTGCTGGCAGTAGCTCACAGGAC
AGCGGTTCGCAGGATGGAGCTGGTGGCAGTAACAAAAATTGA--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
>chr1D_1_TraesCS1D01G159200
CCGGAGCAAATTTTGCGGATCAAAGATGGAGATGCCCTAAGACTTTCAATCATGATGATTATACTTCTTACTAAAGTAAC
GAAGCTTTTGCAATCAATTCACATAATGTCATTGAGCAAAACAAAACTTTCACACAACATATTTCTACATCTAGGGTAGG
CAAGACACGCCTTTTTCCACAAACCATCAATGGTGAAAAATTTCCGTGAAAATAATAATAATAAAA---ATGATTAAGTT
ATACATGTGCTGCCTACATGTCAGGGCATCGTATGTTTGCAACATGACCCGTGTTATAAACTTGTGTTTGCAACATGCCT
AATGTTGCTAATTTGTTAGTCCTTCTTGCCTACTTCCCCTGTTCCAAAATAGATGACCCAAATCGAACGGCCACTGAGGT
GATGGATACGCGTGAGTCATCAGCTGGTTGAAAGGTAGCGATTCCTTGTAAAAAAAATTTAACGGTGAAAATACCAGTAA
ATCGCTGTAAAAAGAAAGGA--GAATACTGGTAGTCAGTTAAATGTTTGACACGAAATCAACCCGATTAACAAAATTCAA
ACCAAACTCTGACGCCTGACGTGTTGTAATCTAATCGAATCAATCGGAAACTAACTAACCT---CTCCTCTGGGCCGCAA
GGAAACACCGTCCGGGGTCACCGCCGTTAGGAAAAGAATTCTATGAGACCAGGTCTCACGCAAGACCCGTCCTGATGGAT
GACACATGGCATTCACAAATCACAAAGCATCCATCCCACCCCCCACTTAAATCAGGGGAGGAGAGATTAAATGCTTTGAG
ATTTGTGAATGCCACGTGTCATCCATCAGGGCGGGTCTCACATGCTAACCGTGAGACCTGGTCTCATATAATTTTTTTTC
CCCGCCGCTCTTGATAAAATCGGAGAAACCCAGAAAAAA-AGGACTAAACGAGATACTGAGAGCCGAAGACCTAAATTCC
GTAGAGAAAACTCGCATCGCCGCCGCTGCCTAGATCGCCGGGCGCCGCCATGTCGACCCCGGGCGCCGCCTACTACGCTT
CCCTCGCGCGCAAGCAGTACTTCTGCTACCAATGCAACCGCACCGTCCTCATCGCCGCCTCCGCCGCGGCCGCCGGCGAG
CTCTCATGCCCCGACTGCCGCGGGGACTTCCTGGAGGAGGTCACCGTCCCCGCCCCCACCATCCTCCCCTTCCCCTTCGC
CTTCCCCCCTATGATGCCCACCGCCTCCTCCCCGTCCCGATCCTCCTCCTCCTCCACCGCCGCGCCCCCCTCCAGCGACC
TCTCCAACTTCCTCACCAGCATCCTCGACCTCCAGGAGGGCCGCCGCGTTAGGTCCAGGAGCGGGAGCGGTGCCGCCTCG
GCCGCTGGCACGGCCACGCCTGAGAACGAGCCGGAGTCCTTCGACCCGCTCGTGTTTTTCCAGAACTACATCCACACCCT
CATGGAGGGGGGCGCCAACATCCAGGTGCTCCTCGACGACGCCAGCGTCAACCTCGCCCCTGGCCCAGGCGGCCGTGCCG
GTGGGACAAGCTACGGGGACTACTTCGTCGGCCCGGGACTGGAGCAACTCATCGAGCAGCTCGCCGAGAACGATCCCAAC
CGCTACGGCACGCCGCCGGCTGCCAAGTCCGCCCTGACCACTCTTCCTGACGTCGTTGTCACAGATGCCATGGTTGCGGC
GGCAGAGGGTGCCGAGTGTGCTGTGTGCAAGGAAGATTTCTCACCTGGAGATGGGGCCAAGCAGATGCCCTGCAAGCATA
TCTACCACGCAGATTGCATTGTACCCTGGTTGGAGCTCCACAATTCGTGCCCCATTTGTCGCTTTGAGCTGCCCACCGAT
GATCCTGATTATGAGGGCAATAAGGCCTCAAACCCACAGTCAGCTGTTGGTATCGCTGCTGCTGCTGCTGCATCTGGGAG
CTCTGGTGCTGCTGAGGAAGGAGGGGAGGAGAGTGGGGAGACTGCAAGGGTGGTGGAAAGGAGATTCAATGTGTCATTGC
CATGGCCGTTTGGTGGATCGGCAGGTCAAACACCACAGCAAGATGGGAACAATGCCGGTGCTGGCAGTAGCTCACAGGAC
AGCGGTTCGCAGGATGGAGCTGGTGGCAGTAACAAAAATTGAACACAAATCTGTGATCACTTGGAGGTATTTACATCATA
TAGCACAGCCTTTTGTATC-GGATGCAATTTACTTGGTAGACTAGATTATATGCTGTTCATAACTCTTTGATTGTAGCTG
AAATTGCTTCAATTCCTGTTTACTATTCTTTTCTTGACTAGTAGAGAAAGAACTACTCATTTTTACAGAATAGTTTGCTA
AATGCAATTACATTTCATAATCATAAACGGTTAGGACTTGAAAGCTGGAGATGCTATAGTACAAACTTGACTGCTCACAT
CAATTTCAGGCATATATCTGATCTGGTGGTTTTGTGTCATTGTAGTATCAGCAACAGTTTATTTTTTTGCATGGTAATAC
GTGTCTCATTTATATCATAACGACCATAGTATAAGTCACGTACATACCGACCTGACAAAACTGAAAAGACAGTAGAACGC
TAGCCTTTGCACATAGGAACATCAGCCAAGAAGTAAAATTACAAACAAGACTGAAGAATCCTCTGAGCTTGACACCAACG
CCCGTCACCTGCCTCTGGCACCACCATAGCAGCCACCAAAGGAGAAAATGACGGATCACCTCCACACCCGAGCTCGACGC
GGCTCCATCGCTGATATGCAGCTTTGCGGACCTCCAAGGTGGCTCGCCAATAAAGGCGAAGCCATTGCCGTTGAACGAAT
CAGACCAGGGCAACACCCCGGACACGCCATCGAACTCCAGATCTGGCACCCCCGCCCAACTAAGATGTTGGAGGAGGAAA
CCATACCTGCATGCCACGAACCACGAACCCAGATCCACCATCTTCCAGATGCCGTCGATGCAGACCACTATCTGCATCCG
CTCCTGGACTACCTCCCAAGCTCCACGCCGGCGCTGTAGTATCAGCAACAGTTGCATATGCTTGTTAAGACTTGTATATA
AGTTCG---TAATAAGCTATTCGTATTAAACAGTAGGAAGCTGTTATCACAAAAAAATTATTTGACGAGCAAGCCTAACT
TCTACT
>chr1A_5
----AGCAAATTTTGCATGTCAACGATGGAGATGGCCTAAGACTTTCAATCATGATGATTATACTTCTTACTAAAT----
GAAACTTTTGCAATCAATTCACATAATGTTATTGAGCAAAACAAAACTTTCACACAACATATTGCTGCCCGTGGGGTAGG
CAAGACACGCCTTTTTCCACAAACCATCAACGGTG-AAAATTCCTGTGAAAATAATAATAATAATAAAGATAATTAAGTT
ATATACGCGCTGGCTACGTGTCAAGGCATCGTATGTTTGCAACATGGCCTGCGTTACAAACT-----------CATGCCT
AATGTTGCAAACTTGTTGGTCAATCTTACCTTG---------------------------AATCGAACCGCCACTGAGGT
GATGGATACACGTGAGTCATCAGCCGGTTGAAAGATAACTTTTTCTAAAAAAA-----TTAACGGTGAAAATACCAGTAA
ATCGCTGCAAAAAGAAAGGA--GAATACTGGTAGTCAGTTAAATGTTTGACACGAAATCAACCCGATAAACAAAATTCGA
ACCAAACTCTGACGCCTGACGTGTTGTAATCTAATCGAATCAATCGGAAACTAACTAACCTCTCCTCCTCTGGGCCGCAA
GGAAACACCGTCCGGGGTCACCGC--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----CGCTCTTGATAAAATCGGAGAAACCCAGAAAAAA-AGGACTAAACGAGATACTGAGAGCCGAAGACCTAAATTCC
ATAGAGAAAACTCGCATCGCCGCCGCTGCCTAGATCGCCGGGCGCCGCCATGTCGACCCCGGGCGCCGCCTACTACGCTT
CCCTCGCGCGCAAGCAGTACTTCTGCTACCAATGCAACCGCACCGTCCTCATCGCCGCCTCCGCCGCGGCCGCCGGCGAG
CTCTCATGCCCCGACTGCCGCGGCGACTTCCTGGAGGAGGTCACCGTCCCTGCCCCCACCATCCTCCCCTTCCCCTTCGC
CTTCCCCCCTATGATGCCCACCGCCTCCTCCCCGTCCCGATCCTCCTCGTCATCCGCCGCCGCGCCCCCCTCCAGCGACC
TCTCCAACTTCCTCACCAGCATCCTCGACCTCCAGGAGGGCCGCCGCGTTAGGTCCAGGAGCGGGAGCGGGGCCGCCTCG
GCCGCTGGCACGGCCACGCCTGAGAACGAGCCGGAGTCCTTCGACCCGCTCGTGTTTTTCCAGAACTACATCCACACCCT
CATGGAGGGGGGCGCCAACATCCAGGTGCTCCTCGACGACGCCAGCGTCAACCTCGCCCCTGGCCTAGGCGGCCGTGCCG
GTGGGACAAGCTACGGGGACTACTTCGTCGGCCCGGGACTGGAGCAACTCATCGAGCAGCTCGCCGAGAACGATCCCAAC
CGCTACGGCACGCCGCCGGCTGCCAAGTCCGCCCTGACCACTCTTCCTGACGTCGTTGTCACCGATGCCATGGTTGCGGC
GGCAGAGGGCGCCGAGTGCGCTGTGTGCAAGGAAGATTTCTCACCTGGAGATGGGGCCAAGCAGATGCCCTGCAAGCATA
TCTACCACGCAGATTGCATTGTACCCTGGTTGGAGCTCCACAATTCGTGCCCCATTTGTCGCTTTGAGCTGCCCACCGAT
GATCCTGATTATGAGGGCAATAAGGCCTCAAACCCACAGTCAGCTGTTGGTATCGCTGCTGCTGCTGCTGCATCTGGGAG
CTCTGGTGCTGCTGAGGAAGGAGGGGAGGAGAGTGGGGAGACTGCAAGGGTGGTGGAAAGGAGATTCAATGTGTCATTGC
CATGGCCGTTTGGTGGATCGGCAGGTCAAACACCACAGCAAGATGGGAACAATGCCGGTGCTGGCAGTAGCTCACAGGAC
AGCGGTTCGCAGGATGGAGCTGGTGGCAGTAACAAAAATTGAACACAAATCTGTGATCACTTGGAGGTATTTACATCATA
TAACACAGCCTTTTGTATCAGGATGCAATTTACTTGGTAGACTAGATTATATCCTGTTCATAACTCTTTGATTGTAGCTG
AAATTGCTTCAATTCCTGTTTACTATTCTTTTCTTGACTAGTAGAGAAA-AACTACTCATTTTTACATAATAGTTTGCTA
AATGCAATTACATTTCATAATCATAAACGGTTAGGACTTGAAAGCTGGAGATGCTATAGTACAAACTTGACTGCTCGCAT
CAATTTCAGGCATATATCTGATCTGGTGGTTTTGTGTCATTGTAGTATCGGCC---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------ACAGTTGCATATGCTTGTTAAGACTTGTATATA
AGTTCG---TAATAAGCTATTCGTATTAAACAGTAGGAAGCTGTTATCACAA----------------------------
------
>chr1B_486
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------AAAAAAAAAGGAAAGAATACTGGTAGTCAGTTAAATGTTTGACACGAAATCAACCCGATTAACAAAATTCAA
ACCAAACTCTGACACCTGACGTGTTG-----TAATCGAATCAATCGGAAACTAACTAACCTCTT--------GGCCGCAA
GGAAACACCGTCCGGGGTCACCGC--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----CGCTCTTGATAAAATCGGAGAAACCCAGAAAAAAAAGGACTAAACGAGATACTGAGAGCCGAAGACCTAAATTCC
GTAGAGAAAACTCGCATCGCCGCCGCTGCCTAGATCGCCGGGCGCCGCCATGTCGACCCCGGGCGCCGCCTACTACGCTT
CCCTCGCGCGCAAGCAGTACTTCTGCTACCAATGCAACCGCACCGTCCTCATCGCCGCCTCCGCCGCGGCCGCCGGCGAG
CTCTCATGCCCCGACTGCCGCGGCGACTTCCTGGAGGAGGTCACCGTCCCCGCCCCCACCATCCTCCCCTTCCCCTTCGC
CTTCCCCCCTATGATGCCCACCGCCTCCTCCCCGTCCCGATCCTCCTCCTCCTCCACCGCCGCGCCCCCCTCCAGCGACC
TCTCCAACTTCCTCACCAGCATCCTCGACCTCCAGGAGGGCCGCCGCGTTAGGTCCAGGAGCGGGAGCGGTGCCGCCTCG
GCCGCTGGCACGGCCACGCCTGAGAACGAGCCGGAGTCCTTCGACCCGCTCGTGTTTTTCCAGAACTACATCCACACCCT
CATGGAGGGGGGCGCCAACATCCAGGTGCTCCTCGACGACGCCAGCGTCAACCTCGCCCCCGGCCTAGGCGGCCGTGCCG
GTGGGACAAGCTACGGGGACTACTTCGTCGGCCCGGGACTGGAGCAACTCATCGAGCAGCTCGCCGAGAACGATCCCAAC
CGCTATGGCACGCCGCCGGCTGCCAAGTCCGCCCTGACCACTCTTCCTGACGTCGTTGTCACCGATGCCATGGTTGCGGC
GGCAGAGGGCGCCGAGTGTGCTGTGTGCAAGGAAGATTTCTCACCTGGAGATGGGGCCAAGCAGATGCCCTGCAAGCATA
TCTACCACGCAGATTGCATCGTACCCTGGTTGGAGCTCCACAATTCGTGCCCCATTTGTCGCTTTGAGCTGCCCACCGAT
GATCCTGATTATGAGGGCAATAAGGCCTCAAACGCACAGTCAGCTGTTGGTATCGCTGCT---GCTGCTGCATCTGGGAG
CTCTGGTGCTGCTGAGGAAGGAGGGGAGGAGAGTGGGGAGGCTGCAAGGGTGGTGGAAAGGAGATTCAATGTGTCATTGG
CTTGGCCGTTTGGTGGATTGGCAGGTCAAACACCACAGCAAGATGGGAACAATGCCGGTGCTGGCAGTAGCTCACAGGAC
AGCGGTTCGCAGGATGGAGCTGGTGGCAGTAACAAAAATTGAACACAAATCTGTGATCAGTTGGAGGTATTTACATCTTT
AAACACAGCCTTTTGTATC-GGATGCA----ACTTGGTAGACTAGATTATATCCTGTTAATAACTCTTTGATTGTAGCAG
AAATTGCTTCAATTCCTGTTTACTATTCTTTTCTTGACTAGTGGAGAAAGAACTACCCATGTTTACAGAATAGTTTGCTA
AATGCAATTACATTTCATAATCATAAACGGTTAGGACTTAAAAGCTGGAGATGCTATAGTACAAACTTGACTGTTCACAT
CAATTTCAGGCATATCTCTGATGTGGTGGTTTTGTGTCATTGTAGTATCAGCA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------ACAGTTGCATATGCTCATTAAGACTTGTATATA
AGTTTGTAATAATAAGCTATTCGTATTAAACAGTAGGAAGGTGTTATCACAA----------------------------
------
>chr7D_2450
TATTCT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------TTTTTCATGGTAATAC
GTGTCTCATTTATATAATAAGGATTATAGTACAAGCCA-GTACATACCAACCTGACAAAACTGAAAAGACAGCAGAACGC
TAGCCTTTGCACACAGGAACACCAGCCAAGAAGTAAAATTACAAACAAGACTGAAGAATCCTCTGAGCTTGACACCAACA
CCCGTCACCTGCCTCTGGCACCACCATAGCAGCCACCAAAGGAGAAAATGACGGATCACCTCCACACCCGAGCTCGACGC
GGCCCCATCGCTGATATGCAGCTTTGCGGACCTCCAAGGTGGCTCGCCAATAAAGGCGAAGCCATTGCCGTTGAACGAAT
CAGACCGGGGCAACACCCCGGACACGCCATCGAACTCCAGATCTGGCACCCCCGCACAACTAAGATGTCGGAGGAGGAAA
CCATACCTGCCTGCCACGAACCACGAACCCAGATCCACCATGTTCCAGATGCCGTCGATGCAGACCACAATCTGCATCCG
CTCCTGGACTACCTCCCAAGCTCCACGCCGCGCG----------------------------------------------
--------------------------------------------------------------------------------
------
>chr5D_2451
ATTTTTT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------TCATGATAATAC
GTGTCTCGTTTATATCATAACGACCATAGTACAAGTCACGTACATACCGACCTGACAAAACTGAAAAGACAGCAGAACGC
TAGCCTTTGCACACAGAAACATCAGCCAAGAAGTAAAATTACAAACAAGACTGAAGAATCCTTTAAGCCTGACACCAACG
CCCGTCACCTGCCTCTGGCACCACCATAGCAGCCACCAAAGGAGAAAATGATGGATCACCTCCATACCCGAGCTCGACGT
GGCTCCATCGCTGATATATAGCTTTGCGGACCTCCAAGGTGGCTCGCCAATAAAGGCGAAGCCATAGCCGTTGAACGAAT
CAGACCGGGGCAACACCCCGGACACGCCATCGAACTCCAGATCTGGCACCCCCGCCCAACTAAGACGTTGGAGGAGGAAA
CCATACATGCATGCCACGAACCACGAACCCAGATCCACCATCTTCCAGATGCCGTCGATGCAGACCACAATCTGCATCCG
CTCCTGGACTACCTCCCAAGCTCCACGCCGGCGCT---------------------------------------------
--------------------------------------------------------------------------------
------
>chr1D_2452
TTTTTTT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------GCATGATAATAC
GTGTCCCATTTATATCATAACGACCATAGTACAAGTCACGTACATACCGACCTGACAAAACTGAAAAGACAGCAGAACGC
TAGCCTTTGCACACAGGAACATCAGCCAAGAAGTAAAATTATAAACAAGACTGAAGAATCCTCTGAGATTGACACCAACG
CCCGTCACCTGCCTCTGACACCACCATAGCAGCCACTAAAGGAGAAAATGACGGACCACCTCCACACCCGAGCTCGACGC
GGCTCCATCGCTGATATGCAGCTTTGCGGACCTCCAAGGTGGCTCGCCAATAAAGGCTAAGCCATTGCCGTTGAACGAAT
CAGACCGGGGCAACACCCCGGACACGCCATCGAACTCCAGATCTGGCACCCCCGCCCAACTAAGACGTTGGAGGAGGAAA
CCATACCTGCATGCCACGAACCACGAACCCAGATCCACCATCTTCCAGATGCCGTCGATGCAGACCACAATCTGCATCCG
CTCCTGGACTACCTCCCAAGCTCCACGCCGGCGCTGGAG-----------------------------------------
--------------------------------------------------------------------------------
------
>chr7A_2452
TTTTTTT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------GCATGGTAATAC
GTGTCTCATTTATATCATAACGACCATAGTACAAGTCACGTACATACCGACCTGATAAAACTGAAAAGACAGCAGAACGC
TAGCCTTTACACATAGGAACATCAGCCAAGAAGTAAAGTTACAAACAAGGCTGAAGAATCCTCTGAGCTTGACACCAATG
CCCGTCACCTGCCTCTGGCACCACCATAGCAGCCACCAAAGGAGAAAATGACGGATCACCTCCACACCCGAACTCGAGGC
GGCTCCATCGCTGATATGCAGCTTTGCGGAACTCCAAGGTGGCTCGCCAATAAAGACGAAGCCATTGCCGCTGAACGAAT
CAGACCGGGGCAACACCCCGGACACCTCATCGAACTCCAGATCTGGCATCCCCGCCCAACTAAGACGTTGGAGGAGGAAA
CCATACCTGCATACCACGAACCACGAACCCAGATCCACCATCTTCCAGATGCCGTCGATGCAGACCACAATCTGCATCCG
CTCCTGGACTACCTCCCAAGCTCCACGCCGGCGCTG--------------------------------------------
--------------------------------------------------------------------------------
------
>chr7D_2452
TTTTTTT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------GCGTGGTAATAC
GTGTCTCATTTATATCATAACGACCATAGTACAAGTCACGTACATACCGACCTGAGAAAACTGAAAAGACAGCAGAACGC
TAGCCTTTGCACACAGGAACATCAGCCAAGAAGTAAAATTACAAACAAGACTGAAGAATCCTCTGAGCTTGACACCAACG
CCCGTCACCTGCGTCTGGCACCACCATAGCAGCCACCAAAGGAGAAAATGACAGATCACCTCCACACTCGAGCTCGACGC
GGCTCCATCGCTGATATGCAGCTTTGCGGACCTCCAAGGTGGCTCGTCAATAAAGGCGAAGCCATTGCCGTTGAACAAAT
CAGACCGGGGCAACACCCCGAACACGCCATCGAACTCCAGATCTGGCA-CCCCGCCCAACTAAGACGTTGGAGGAGGAAA
CCATACCTGCATGCCACGAACCACGAACCCAGATCCACCATCTTCGAGATGCCGTCGACGCAGACCACAATCTGCATCCA
CTCCTGGACTACCTCCCAAGCTCCACGCCGGCACTG--------------------------------------------
--------------------------------------------------------------------------------
------
>chr4B_2452
TTTTTTT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------GCATGATAATAC
GTGTCTCATTTATATCATAACGACCATAATACAAGTCACGTACATACCGATCTGACAAAGCTGAAAAGACAGCAGAACGC
TAGCCTTTGCACACATGAACATCAGCCAAGAAGTAAAATTATAAACAAGACTGAAGAATCCTCTGAGCTTGACACCAACA
-CCGTCACCTGCCTCTGGCACCACCATAGCAGCCACCAAAGGAGAAAATGACGGATCACCTCCACACTCGAGCTCGAGGC
GGCTCCATCGCTGATATGCAGCTTTGCGGACCTCCAAGGTGGCTCGTCAATAAAGGCGAAGCCATTGCCGTTGAACGAAT
CAGACCGGGGCAACACCCCGGACACGCCATCGAACTCCAGATCTGGCACCCCCATCCAACTAAGACGTTGGAGGAGGAAA
CCATACCTGCATGCCACGAACCACGAACCCAGATCCACCATCTTCCAGATGCCGTCGATGCAGACCACAATCTGCATCCG
CTCCTGGACTACCTCCCAAGCTCCACGCCGGTGCTG--------------------------------------------
--------------------------------------------------------------------------------
------
>chr2D_2452
TTTTTTT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------TCATGGTAATAC
GTGTCTCATTTATATCATAACGACCATAATATAAGTCACGTACATAACGACCTAACAAAACTGAAAAGACAGCAGAACGC
TAGCCTTTGCACACAGGAACATCAGTCAAGAAGTAAAATTACAAATAAGACTGAAGAATCCTCTGAGCTTGACACCAACG
CCCGTCACCTGCCTCGGGCAACACCATAGCAGCCATCAAAGGAGGAAATGACGGATCACCTCCACACCCGAGCTCGACGC
GGCTCCATCGCTGATATGCAGCTTTGCGGACCTCCAAGGTGGCTCGCCAATAAAGGCGAAGACATTGCCGTTGAATGAAT
CAGACCGGGGCAACACCCTCGACACGTCATCGAACTCCAGATCTGGCACCCCCGCCCAACTAAGACGTTGGAGGAGGAAA
CCATACCTGCATGCCACGAACCACGAACCCAGATCCACCATCTTCCAGATGCCGTCGACGCAGACCACAATCTGCATCCG
CTCCTGGACTACCTCCCAAGCTCCACGCCGGCGCTG--------------------------------------------
--------------------------------------------------------------------------------
------
>chr4D_2452
TTTTT-T-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------TCATGGTAATAC
GTGTCTCATTTATATCATAAAAATCATAGTACAAGTCACGTATATACCGACCTGACAAAACTGAAAAGACAGCAGAACGC
TAGCCTTTGCATACAGGAACACCAGTCAAGAAGTAAAATTACAAACAAAACTGAAGAATCCTCTGAGCTTGACACCAACG
CCCGTCACCTGCCTTTGGCACCACCATAGCAGCCACCAAAGGAGAAAATGACGGATCACCTCCACAACCGAGCTCGACGC
GGCTCCATCGCTGATATGCAGCTTTGCGGACCTCCAAGGTGGCTCGCCAAAAAAGGCGAAGCCATTGCCGTTGAACGAAT
CAGACCGGGGCAACACCCCGGACACGCCATCGAACTCCAGATCTGACACCCCCGCCCAACTAAGACGTTGGAGGAGGAAA
CCATACCTGCCTGCCACGAACCATGAACCCAGATCCACCATCTTCCAGATGCCGTTGATGCAGACCACAATCCGCATCCG
CTCCTGGACTACCTCCCAAGCTCCACGCCGGCGCTG--------------------------------------------
--------------------------------------------------------------------------------
------
>chr6D_2453
-TTTT-T-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------TCATCGTAATAC
GTGTCTCATTTATATCATAACGACCATAGTACAAGTCACGTACATACCGACCTGACAAAACTAAAAAGACAGCAGAACGC
TAGCCTTTGCACACAGGAACATCAGGCAAGAAGTAAAATTACAAACAAGACTGAAGAATCCTCTGAGTTTGACACCAACG
CCCGTCACCTGCCTCTGGCACCACCATAGAAGCCACCAAAGGAGAAAATGACGGATCACCTCCACACACGAGCTCGACGC
GGCTCCATCGCTGATATGCAGCTTTGCGGACCTCCAAGGTGGCTCGCCAATAAAGGCGAAGCCATTGCCGTTGAATGAAT
CAGACCGGGGCAACACCCCGGACACGCCATCGAACTCCAGATCTGGCACCCCCGCCCAACTAAGACGTTGGAGGAGGAAA
CTATACCTGCATGCAACGAACCACGAACCCAGATCCACCATCTTCCAGATGCCGTCGATGCAGACCACAATATGCATCCG
CTCCTGGACTACCTCCCAAGCTCCACGCCGGCGCTGGAG-----------------------------------------
--------------------------------------------------------------------------------
------
>SNPs
SSSS------------SSS----S----------S----------------------------------------SSSSS
---S-------------------------S---------------------------------S--S-SSS-S-------
------------------------------S----S------S-S-------------------S------S--------
---S-S-S----S----S-----S----------------------S--S-S----S-----SSSSSSSSSSS-------
--------S--S-----S---SS----S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S-----------
---------S--------------S---------S--S-SS--S--SSS----SSSSS----------------------
-------S------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
---------S----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--S-------------------------------------------------S---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------SSSSSSSSSSS----------------
------------------------------------------------------------------------S-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S-------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
------------------------------------S--SSSSSSSS---------------------------------
----------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS
>forward_825
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----TGAATGCCACGTGTCATCCA-------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
>reverse_2553
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------------------TAGAACGC
TAGCCTTTGCACA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
