>input_sequence_60285
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----------ATGGGGATGCCGGCGGTGAGGAGGAGGGAGAGGGACGCGGAGGCGGAGCTCAACCTGCCCCCCGGCTTCC
GCTTCCACCCCACCGACGACGAGCTGGTGGAGCACTACCTGTGCCGCAAGGCGGCCGGGCAGCGCCTCCCGGTCCCCATC
ATCGCCGAGGTCGACCTCTACCGCTTCGACCCGTGGGCGCTCCCCGACCGCGCCCTCTTCGGCACCCGC-----------
--------------------------------------------------------------------------------
------------------------------GAGTGGTACTTCTTCACCCCGCGCGACCGCAAGTACCCCAACGGGTCGCG
CCCCAACCGCGCTGCCGGCAACGGCTACTGGAAGGCCACCGGCGCCGACAAGCCCGTCGCGCCCC------GCGGAGGGC
GCACCATGGGGATCAAGAAGGCGCTGGTGTTTTATGCCGGGAAGGCGCCTAAGGGGGTTAAGACCGACTGGATCATGCAT
GAGTACCGCCTCGCCGACGCCGGCCGCGCCGCCGCCAGCAAGAAGGGCTCGCTCAGGGTACGTGATTTGATCGATTGGTT
ACTACTC----CTGGTTGATTTGGTTCTGATTTTCAGATCCCTGCTGCT-------------------TTGATTGATTGA
TTGATTGGTTTGGTGCTGATTCTGATC---CCGATCTGAATTTGTTTCTTCAGCTGGACGACTGGGTGCTCTGCCGGCTC
TACAACAAGAAGAACGAGTGGGAGAAGATGCAGCTCCAGCAGCAGGGGGGAGAGGAGATGATGGTGGAGCCCAAGGCGGA
GAACACGGCGTCCGACATGGTGGTCACCTCGCACTCCCACTCGCAGTCCCAGTCGCACTCGCACTCGTGGGGCGAGGCGC
GCACGCCGGAGTCGGAGATCGTCGACAACGACCCGTCGCTGTTCCAGCAG------GCGGCGGCGTTCCAGGCCCAGAGC
CCCGCCGCCGCGGCGGCGCACCAGGAGATGATGGCCACGCTGATGGTGCCCAAGAAGGAGGCGGCGGAGGAGGCCGGCAG
GAACGACCTGTTCGTGGACCTCAGCTACGATGACATCCAGAGCATGTACAACGGCCTCGACATGATGCCGCCCGGGGACG
ACCTGCTCTACTCCTCCCTCTTCGCCTCGCCCCGTCTCCGGGGGAGCCAGCCCGGCGCCGGCGGCATGCCGGCCCCGTTC
TAA-----------------------------------------------------------------------------
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>chr5B_1_TraesCS5B01G480900
ACGGATGGTTGTGAACGGTGTGACGATCCGTGTAAGAGATGCCCTAGGTTTATTGCAAATAATATTACTTCCTTTGTTTC
TAAGTTTTAAACCTGTTAGAGATTTCATTATAAACTACGTATGAACCAAAATGAATGAATCTACACCCTCAAGTAATCTC
TCCGTCCGGAAATATTTGTTGGAGAAATGGATGTATCTAGACGTATTTTAGTAGTAGATACATTCAATTTTATCCATCTC
TTTGATAAGTATTTCGGGACGGAGGAAGTATGTCTATGTACATCCGTATGTACTGCAGAGTGGAATCAGTAAAAGGTGTA
ATAGGAACGGAGGGAGTAGATATGAGCTGTCTTCTTTCCTAAAAGAGCAGAAAATCTTACGCGGTAGATACGCGGTAAAT
GACCACATTTATTTTCTCCCAATTTTGGTTTCGTAGGAGATCCC----ATAAAACAGCTTCTGCCACGATATGCGTCCGC
TTCAGAAAAAAGAAAGTAAAAAAAAGAACAGGTGTAGCCCCGAGCAGCAGCCACGCACCCACGGTCCTCCCGACCTCTCG
CCACGATCCGCGGCGGGCACAGCCACACACGCGCGTGCCGACCAGGTCCACGCCGCACCGCACAACCGAGCTCCAGCTGA
AGTCGGCCATGACGCAACCCCGCGACCCCC---------GTGGCCAACCAATCCCGCCGCCCGGATACGCCTGCCACTGC
CACTGCCACTGCCACTGCCACCCGCCCGCACCTTCCCCGAAACCCCCCCACCTCATCTCCATCCCCCCACACGTGCCCTT
TTCCTCCCCAAGAAACCCTCCACGCAGCCGCCCCCTCCTCCCCTCCGATCCGAACCTTCCAGACCGCTCCCGCACCCCCT
CCCCTATTTAT---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------CCCCTCCCCCATTCACCACCACCATCACCACACCACACCACAGCTCGCTCACCA
CAATCTC----AACAGCCATCGGAATCAACA---GCAGCAGCGGAGCGATTTCATCGACTAACAAA--------------
-TCAGCGGACATGGGGATGCCGGCGGTGAGGAGGAGGGAGAGGGACGCGGAGGCGGAGCTCAACCTGCCCCCCGGCTTCC
GCTTCCACCCCACCGACGACGAGCTGGTGGAGCACTACCTGTGCCGCAAGGCGGCCGGGCAGCGCCTCCCGGTCCCCATC
ATCGCCGAGGTCGACCTCTACCGCTTCGACCCGTGGGCGCTCCCCGACCGCGCCCTCTTCGGCACCCGC-----------
--------------------------------------------------------------------------------
------------------------------GAGTGGTACTTCTTCACCCCGCGCGACCGCAAGTACCCCAACGGGTCGCG
CCCCAACCGCGCTGCCGGCAACGGCTACTGGAAGGCCACCGGCGCCGACAAGCCCGTCGCGCCCC------GCGGAGGGC
GCACCATGGGGATCAAGAAGGCGCTGGTGTTTTATGCCGGGAAGGCGCCTAAGGGGGTTAAGACCGACTGGATCATGCAT
GAGTACCGCCTCGCCGACGCCGGCCGCGCCGCCGCCAGCAAGAAGGGCTCGCTCAGGGTACGTGATTTGATCGATTGGTT
ACTACTC----CTGGTTGATTTGGTTCTGATTTTCAGATCCCTGCTGCT-------------------TTGATTGATTGA
TTGATTGGTTTGGTGCTGATTCTGATC---CCGATCTGAATTTGTTTCTTCAGCTGGACGACTGGGTGCTCTGCCGGCTC
TACAACAAGAAGAACGAGTGGGAGAAGATGCAGCTCCAGCAGCAGGGGGGAGAGGAGATGATGGTGGAGCCCAAGGCGGA
GAACACGGCGTCCGACATGGTGGTCACCTCGCACTCCCACTCGCAGTCCCAGTCGCACTCGCACTCGTGGGGCGAGGCGC
GCACGCCGGAGTCGGAGATCGTCGACAACGACCCGTCGCTGTTCCAGCAG------GCGGCGGCGTTCCAGGCCCAGAGC
CCCGCCGCCGCGGCGGCGCACCAGGAGATGATGGCCACGCTGATGGTGCCCAAGAAGGAGGCGGCGGAGGAGGCCGGCAG
GAACGACCTGTTCGTGGACCTCAGCTACGATGACATCCAGAGCATGTACAACGGCCTCGACATGATGCCGCCCGGGGACG
ACCTGCTCTACTCCTCCCTCTTCGCCTCGCCCCGTCTCCGGGGGAGCCAGCCCGGCGCCGGCGGCATGCCGGCCCCGTTC
TAAGCAGAGCCGAGACAGAGACCGTCAGAGA--CAGAGATCGACAGAAGCGGAACGGATGACTTCTTCGCCGCGAGCAAG
ATCGCTCGCGGACCAGTGTAAATACAGCATAGGAAACGGGAGGGAGGATGCGT-CGTCGTGTCTGAGAGAGCCGGCGTGG
CGCGGTCGCCGGCGCCGGGGCGTGCCGCTGTACATGGAGAGCCCGGTGCTGGGGCCTGGCCGGCTGGGTTGATTCTTTTG
TTCTTACTACTACTTTGTACTCTCAATGCGGATGTAGCTCTTTCTTCTCACTCCTCGGTAGTAGAATCGACCGACCAAAT
ACATATGTAGCTCTGTTCCTTCCTTCTCTTCAGTAGAAATCAACCAAATTTTTCTGTTATGCTGCTATA----CTTCTCT
GATGTCGGGCAGGATGAATTGCCTCAATTTTCAGTCAGTCTGATCTACTG---ATCTGCCTGTGTTGTGTTTGCCTGCCT
GC----TTGGACACACCAAGCACACTCCGGTTCTGCAGGTAGCTCTATGTAGCTCGAGCTCCAGAACGAATTTCTGATAG
TATTGGTTCCTGTAAAATGCTGGTTAGAATAGAAATCTGAATGGCTGAAAATGTTGGTTAGAAATCTGAATGGCTGTCCG
AACGTAATGCTTCCACGGAGCAGAAGCATGCACGGCTGCTTGCTGTGAGTAACCTGTGGTTATATGTTTTTTTTAAACGG
TTTTGCCTCATCGATTAATTAAGAAAAAGAGAATTGCCTGGTTAATTAACGGAAAACCGGACGAAAACCGATACATATAA
AACTACTCGCTAATAAAGAAACGCGATGACCCCCGATCAACCGGACAAACATACATAACACGCAACAACCATGATCCCTT
GCACTTCTACGTCGCAATGAAACTCCCAACGAAACTAAGGTTGAATACAACAGACACCACCCAATCCACGAAGACGAGCC
AATCGGAGATGGTGATCGAAGAGACTGAGTATCATCCATTAAGCAGCCGCGGACGCC
>chr5D_395
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--------------------------------------------------------------------------GTAATT
GGCCACATTTATTTTCTCACAATTTTGGTTTCGTACGATATCCCATAAATAAAACAGCTGCTGCCACGACATGCGTCCGG
TTCAAAAAAAGAAATC--AAAAAAAGGACAGGTGTAGACCCGAGCAGCAGCCACGCAGCCACAGTCCTCCCCACCTCTCG
CCACGATCCGCGGCGGGCACAGCCACACACGCGCGTGCCGACCAGCTCCCCGCCGCACCGCACAACCGAGCGCCAGCTGA
AGTCGGCCATGACGCAACCCCGACCCTACCCCGTGGGCTGTGGCCAACCAATCCCGCCGCCCGGATACGCCTGCCACTGC
CACTGCCACTGCCACT-----------GCACCTTCCCCGAAACCCCCCACCTCATCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNATTTATCCCCTCCCCCATCCCCCATTCACCACCACCATCACCACACCACAC---AGCTCGCTCACCA
CAATCTC----AACAGCCATCGGAATCAACAGCAGCAGCAGCGGAGCGATCTCATCGACCAACTCTCTTCCAAGTTTCGA
TTCAACGGACATGGGGATGCCGGCGGTGAGGAGGAGGGAGAGGGACGCGGAGGCGGAGCTCAACCTGCCGCCGGGCTTCC
GCTTCCACCCCACCGACGACGAGCTCGTGGAGCACTACCTGTGCCGCAAGGCGGCCGGCCAGCGCCTGCCCGTGCCCATC
ATCGCCGAGGTCGACCTCTACCGCTTCGACCCGTGGGCGCTCCCCGACCGCGCCCTCTTCGGCACCCGC-----------
--------------------------------------------------------------------------------
------------------------------GAGTGGTACTTCTTCACCCCGCGCGACCGCAAGTACCCCAACGGCTCCCG
CCCCAACCGCGCCGCCGGCAACGGATACTGGAAGGCCACCGGCGCCGACAAGCCCGTCGCGCCCC------GCGGTGGGA
GGACCATGGGGATCAAGAAGGCCCTGGTGTTTTACGCCGGCAAGGCGCCCAAGGGGGTTAAGACCGACTGGATCATGCAT
GAGTACCGCCTCGCCGACGCCGGCCGCGCCGCCGCCAGCAAGAAGGGCTCGCTCAGGGTAAGTTACTAT-----TGGTTG
ATTACTA----GTAGTTGATTTGGTTGGGA-TTTCAGATCCCTGCTGCT-------------------TTGATTGATTGA
TTGATTGATTCGGTGCTGATTTTGATGATTCCGATCTGAATTTGTTTCTTCAGCTGGACGACTGGGTGCTCTGCCGGCTC
TACAACAAGAAGAACGAGTGGGAGAAGATGCAGCTCCAGCAGCAGGGGGGAGAGGAGATGATGGTGGAGCCCAAGGAGGA
GCACGCCGCGTCGGACATGGTGGTCACCTCGCACTCCCACTCGCAGTCCCAGTCGCACTCGCACTCCTGGGGCGAGGCGC
GCACGCCCGAGTCGGAGATCGTCGACAACGACCCGTCGCTGTTCCAGCAG------GCGGCGGCGTTCCAGGCCCAGAGC
CCCGCCGCCGCGGCGGCGCACCAGGAGATGATGGCCACGCTGATGGTGCCCAAGAAGGAGGCGGCGGACGAGGCCGGCAG
GAACGACCTGTTCGTGGACCTCAGCTACGACGACATCCAGAGCATGTACAACGGCCTCGACATGATGCCGCCAGGGGACG
ATCTGCTCTACTCGTCCCTCTTCGCCTCCCCAAGGGTCCGGGGGAGCCAGCCCGGCGCCGGCGGCATGCCGGCCCCGTTC
TAAGCAGAGCCAAGACACAGACCGTCAGATA--CCGAGATCGACAGAAGTGGAACGGATGACTTCTTCGCCGCGAGCGAG
CGAGATCGCGGCGCAGTGTAAATACAGCATAGGAAACGGGAGGGAGGTCGCGT-CGTCGTGTC-GAGAGAGCCGGCGTGG
CGCGGGCGCCGGCGCCGGGGCGTGCCGTTGTACATGGAGAGCCCGGTGCCGGGGCCTGGCCGGCTGGGTTGATTCTTTTG
TTCTTACTAC---TTTGTACTCTCAATGCGGATGTAGCTCTTTCTTCTCACTCCTCACTAGTAGAATCGACCGACCAAAT
ACATATGTAGCTCTGTT---------TCTTCAGTAGAAATCAACCAAATTTTGCTGTTATGCTGCTGCTCTACCTTTTTT
GTAGTCGGGCAGGATGAACTGCCCCATTTTTCAGTCAGTCTGAT---CTAATAATCCGCCCGTGTTTTGTTTGCCTGCCT
GC----TTGGACACACCAAGAACACTCCGGTTCTGCAGGTAGCTCTATGTAGCTCGAGCTCC------------------
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>chr5A_930
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-----------------------------------------------------------------------------CCA
CAATCTCGAACAACGGCCGTCGGATCCATCATCATCGGCAGCGGAGCGATTCCATCGACCAGCTTTCTACAG--------
----ACGGACATGGGGATGCCGGCCGTGAGGAGGAGGGAGAGGGACGCGGAGGCGGAGCTCAACCTGCCCCCCGGCTTCC
GCTTCCACCCCACCGACGACGAGCTCGTCGAGCACTACCTCTGCCGCAAGGCGGCGGGGCAGCGCCTCCCGGTCCCCATC
ATCGCCGAGGTCGACCTCTACCGCTTCGACCCCTGGGCGCTCCCTGACCGCGCCCTCTTCGGCACCCGC-----------
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------------------------------GAGTGGTACTTCTTCACCCCCCGCGACCGCAAGTACCCCAACGGCTCCCG
ACCCAACCGCGCCGCCGGCAACGGCTACTGGAAGGCCACCGGCGCCGACAAGCCCGTCGCGCCCC------GCGGCGGGC
GGACCATGGGGATCAAGAAGGCCCTCGTGTTTTACGCGGGCAAGGCGCCTAAGGGGGTCAAGACCGACTGGATCATGCAT
GAGTATCGCCTCGCCGACGCCGGCCGCGCCGCCGCCAGCAAGAAGGGCTCGCTCAGGGTACGTTATTGGTTTGATTATAC
TTGATGATTTACTGGTTGATTTGGTCGGGA-TTTCAGATCCCTGCTGCTGCTTCGACTGATTGATTGATTGATTGATTGA
TTGATTGATTCGGTGCTGATT---------CCGATCTGAATTTGTTTCTTCAGCTGGACGACTGGGTGCTCTGCCGGCTC
TACAACAAGAAGAACGAGTGGGAGAAGATGCAGCTGCAGCAGCAAGGGGAAGAGGAGACGATGATGGAGCCCAAGGCGGA
GAACACGGCCTCCGACATGGTGGTCACCTCGCACTCCCACTCGCAGTCCCAGTCGCACTCGCACTCGTGGGGCGAGGCGC
GCACGCCGGAGTCGGAGATCGTCGACAACGACCCGTCGCTGTTCCAGCAGGCGACGGCGGCGGCGTTCCAGGCCCAGAGC
CCCGCGGCCGCCGCGGCGCACCAGGAGATGATGGCCACGCTGATGGTGCCCAAGAAGGAGGCGGCGGACGAGGCCGGCAG
GAACGACCTCTTCGTCGACCTCAGCTACGACGACATCCAGAGCATGTACAACGGCCTCGACATGATGCCGCCCGGGGACG
ACCTGCTCTACTCCTCCCTCTTCGCCTCCCCCCGTGTCCGCGGGAGCCAGCCCGGCGCCGGCGGCATGCCGGCCCCGTTC
TAAGCAGAGCAAAGACAGAGACCGTCAGAGACCCCGAGATCGACAGAAGTGGAATGGACGACTTCTTGGCCGCGAGCGAG
CGAGACCGCGGTGCAGTGTAAATACAGCATAGGAAACGGGAGGGAGGGAGGTGGCGTCGTGTC-GAGAGAAGCCGGCGTC
GT-----------GCCGGGGCGTGCCGTTGTACATGGAGAGCCCGGCGCCGGGGCCTGGCCGGCTGGGTTGATTCTTTTG
TTCTTACTACC---TTGTACTCTCAATGCGGATGTAGCTCTTTCTTCTCACTCCTCACTAGTAGAATCGACCGACCGAAT
ACATATGTAGCTCTGTTCTTTCCTTCTCTTCAGTAGAAATCAACCAAATTTTGCTGTTATGCTGCTATA----CTTTTCT
CCTGTTGGGCAGGATGAATTGCCTCATTTT-CAGACAGTCTGATCCACTAATAATCTGCCAGTGTTGTGTTTGCCTGCCT
GCCTGCTTGGACACACCAAGAACACTCCGGTTCTGCAGGTAGCTCTGTGTAGCTCGAGCTCCAGA---------------
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>chr3B_1030
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---------------------------------------GAGGGACGCGGAGGCGGAGCTCAACCTGCCGCCGGGCTTCC
GCTTCCACCCCACGGACGACGAGCTCGTCGTGCACTACCTCTGCAGGAAGGTGGCGGGCCAGCCGCAGCCCGTGCCCATC
ATCGCCGAGGTCGATCTCTACAAGTTCAACCCCTGGGATCTGCCCGGTGCGCCTTCTCTTCTTCCTCTCTCTCCCCTCCC
CTGTTTTCTCTTCTCCTTCTTCCTCCTTCTTGGTGGTTCAATGTGTGCTGTGCCGCGCTGACCTTGGCCGCGGGTTCGTT
CGTGCAGAGAGGGCGCTGTTCGGGAGCAGGGAGTGGTACTTCTTCACGCCACGCGACCGCAAGTACCCCAACGGCTCGCG
CCCCAACCGCTCCGCCGGCACCGGCTACTGGAAGGCCACCGGCGCCGACAAGCCCGTGGCGCCCAAGGAGAGCGGCGGCA
GGACGGTCGGCATCAAGAAGGCGCTCGTCTTCTACTCCGGCAGGGCGCCCAGGGGCGTCAAGACCGACTGGATCATGCAC
GAGTACCGCATCGCCGAAGCCGACCGCGCAC---CCGGCAAGAAGGGATCCCTCAAGGTA--------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-
-S----------------S----------------S--S--------------------S---------S---------S
----S-----SS--SSSS--------S----------S-------------------S----S--------S--------
---------------------------------------------S---S---------------------S--------
----------------------SSS-SS----------------------------------------------------
----------------SSSSSSSSSSS---------------------SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS---------------------------------------------------------------------
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-----------------------------S----------------------------------SSS-------------
-----------------------------------------------------------S---SSS--------------
----S---------------------------------------------------------------------------
-------------------------S------------------------------------------------------
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--------------------------------------------------------------------------S-----
------------S--------------------------------------------------------------S----
-S--------------------------------S-----S---------------------------------------
---------------------------------------------------------------S---S-S-S-----S-S
-S----S-------------------SS--S-------------------------------------------------
-------S--S----------S----S-----------------------------------------------------
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--------------------------------------------------------------------S-----------
------------------------------S-------------------------------------------------
----------------------------S------S--------------------------------------------
-----------S----------------------S--------------S---------------------------S--
SSS-S------SS----------------------------------SS--------------S----------------
-----S---------------------S---------------------S------------------------------
----------SSS-------------------------------------------SS----------------------
------------------S---------------------------------S-----------------------S---
-S------------------------S------------------S---S----------S-------------------
--------------------S--------------------------------------------SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_823
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---CTCCCCAAGAAACCCTCCAC---------------------------------------------------------
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>reverse_3206
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-----AATGCTTCCACGGAGCAGAA-------------------------------------------------------
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