>input_sequence_60271
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TTCGCA---TCATCTTCATCAAACAAGGGATCTACCGAT--CGATCGACA-----TCTCCCTCTCGCTCGTAGTAGGCGT
CGCGGCTGATCCAGGAGCAGCT---AGCAATGGCGGCAGTAGCTCTTCTCCCGTCGCTGCTCCCGTCGCCGCCGAGGAGC
GAGATGCCGCCGCTGCTCCCGACGCCGCCCAGGAGCGAGATGCTGCCGCTGTTGCCGACGCCGCACGGTGTCATCCTCAC
CATGCTGGTGTCCGCCATGCCAGGCCGCGCCGACTTCGTCAAGAGGTGGGACTGGAACAAGAAACGCGACGATAATCCAT
GCAGCTCAATCTGCTCCTCGTC---------GTCG---------GAGGGCAGCGGGAGCGCCTGCCGTGCCGACTCCGTC
GGCAGGTGGGACTCGCACAAGAAATACAAG-GCGCCCCGCACCACCATGTCG---------TCATCATCGT---CTTCGT
CAC------AGGGCGCCGGGAGCCCCGGGCGTGCCGACTCCGTCGAACGCTGGGACAGCAAGAAA---CTGGAGAGCTCA
------------CCGCCCACGGATCG------CGGCCGCCATGTCGGCAACGGCAACAAGCGCCTGCCTAGCCCTAGCCG
--------CGCGTCTTCGGCGGACCGCTGGGACTTACACAAGAAGCCTCGCCCGGAGCAG------ATGGAGAAGCCGCC
TCAGACTAA---C---GCGGCAGCGACGACGCCGGCGCTAGCC---ATGATGACACCGCACAAGGCCGTGTTCGCCGGGC
CCAGCTTCTACGCCACGCCTGATCCGAGCATGCTCCCCATGCCCTCCTTCTTTCTGCTGGCACGTCCGCGTGCACTCTGT
ACTCAGTA---ACT--------AAGTCCACCATGGCGATCTAGTTTCTTCTT--------GCGGAGTAGACGAGTGGTGC
TGTATG-TA--GTCGTAGGGTGTCGAAGT--------CAATCACATATAGTAACATATGTATCCCTATTATTTCATCTCA
GCTAGTGAAAAGCATTTGGTTGGCCGATGCTACTCCGGTGTCATTGTTCCAATGTAAACATTAGGCCGATGCTACTCCTC
CTCTTGGTGTTATGATTCCAATGTAACCAAAATATA-GGGAGGATGTTTAGTTTTCATGAATTTGTTCAGGGTCATTTTT
CTGCAAG------------------GCGTTCCGTGTGAAGTTAACTAACTAAATAAA-----------------------
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>chr1A_1_TraesCS1A01G029600
TAAGTTGGGCTTTTGATTTGGCCCATTGTCATATTGATGTCAAATTTGTCATTTTTGTATCTCGAGCAATGTTTTGAATT
TTGATACGTAATTTTGTGACAACATGCACTGATGTTGTGTCAATGTGCTTGTTTCTTTTTCAGTTTT-TTTCAAACATTC
TAAAATGTGCTACAACATACGGTCACCGGTAGCACTACAAGGGTGGGTGCACCCGATACATTCCCCTAGAATGTGCTCAA
TGAATCTTACCCAATCAGTTGAATCTTGCAGCAGTCCTGACTTGCTAATGGTATGGAGGAGGAGAATGCCAAAGCCGAAC
ACATCATGTTTAAATGAAAAAAATACCATCTGCGGTGTATTCCGGCGGTAAATAGCCCCTGAAATGGAAATAAAAGATCT
TGGTAAAATTGAGAAGAAGGAAACAAGAAATACTATCTATGTATAACTGCAGCTCTTACAGTGTCCCCGCCAACTCTTGC
GTCACTCTCTCAGCAACATCTTCATCCTTTTGATTCAGT-----------------------------------------
----------------------------------------------------------------------ATTTTAGACC
TCTCAAAGTCACAAATCTTAGGATTCATGTTGGAATCCAAGAGGATGTTGGCTGGTTTCAGATCCAAATGTTAGGTGCGT
GGTCTACGGATCTGGATGTAATTTTTATTATTTCTA-GTGTTTGTTGTACTACCATGATTGAAGGTGAATAGATTGAAAG
TTTTTAGGAAAAAAAACTATGAGCTTCGAGCTCTTTTCGCAAAAAGAAAAGGGGTTTTATAGGTAGAATGGGTCCACTC-
-CATGTACGTACGTATCACCAAAAACATCCATCACCAATCGCAAAGTGCCCAGTGCGGATTGGATACGACAAAATAAATA
GTGTATTTTTTTCCGGTCTGGCGCGTGGGTTCGATCATTTCCGTGTCCGCTACTCGTCGGATTCGGACGACCGGCCCGAT
CCGGGTCGGG-----AACGAGCACACATGCACAGCGGGCAACAATAAATAGGTGCCCCAGGCCATTGCGCTGTGGCGTTC
TTCGCA---TCATCTTCATCAAACAAGGGATCTACCGAT--CGATCGACA-----TCTCCCTCTCGCTCGTAGTAGGCGT
CGCGGCTGATCCAGGAGCAGCT---AGCAATGGCGGCAGTAGCTCTTCTCCCGTCGCTGCTCCCGTCGCCGCCGAGGAGC
GAGATGCCGCCGCTGCTCCCGACGCCGCCCAGGAGCGAGATGCTGCCGCTGTTGCCGACGCCGCACGGTGTCATCCTCAC
CATGCTGGTGTCCGCCATGCCAGGCCGCGCCGACTTCGTCAAGAGGTGGGACTGGAACAAGAAACGCGACGATAATCCAT
GCAGCTCAATCTGCTCCTCGTC---------GTCG---------GAGGGCAGCGGGAGCGCCTGCCGTGCCGACTCCGTC
GGCAGGTGGGACTCGCACAAGAAATACAAG-GCGCCCCGCACCACCATGTCG---------TCATCATCGT---CTTCGT
CAC------AGGGCGCCGGGAGCCCCGGGCGTGCCGACTCCGTCGAACGCTGGGACAGCAAGAAA---CTGGAGAGCTCA
------------CCGCCCACGGATCG------CGGCCGCCATGTCGGCAACGGCAACAAGCGCCTGCCTAGCCCTAGCCG
--------CGCGTCTTCGGCGGACCGCTGGGACTTACACAAGAAGCCTCGCCCGGAGCAG------ATGGAGAAGCCGCC
TCAGACTAA---C---GCGGCAGCGACGACGCCGGCGCTAGCC---ATGATGACACCGCACAAGGCCGTGTTCGCCGGGC
CCAGCTTCTACGCCACGCCTGATCCGAGCATGCTCCCCATGCCCTCCTTCTTTCTGCTGGCACGTCCGCGTGCACTCTGT
ACTCAGTA---ACT--------AAGTCCACCATGGCGATCTAGTTTCTTCTT--------GCGGAGTAGACGAGTGGTGC
TGTATG-TA--GTCGTAGGGTGTCGAAGT--------CAATCACATATAGTAACATATGTATCCCTATTATTTCATCTCA
GCTAGTGAAAAGCATTTGGTTGGCCGATGCTACTCCGGTGTCATTGTTCCAATGTAAACATTAGGCCGATGCTACTCCTC
CTCTTGGTGTTATGATTCCAATGTAACCAAAATATA-GGGAGGATGTTTAGTTTTCATGAATTTGTTCAGGGTCATTTTT
CTGCAAG------------------GCGTTCCGTGTGAAGTTAACTAACTAAATAAAAAACCGCACTTACCGAATGACCG
TACTACCAGTACCAAACAGTATTTATGCAAATAACCGAATTGCCGAAGGCACGACCGTATATATGTGTCACGGGGTAGAA
GGAGAAATGGCTGGAAAAACTAACGTTATATGACTGCCATATAACAGATCATTGCATATCCCACACACATGGCAA-----
------------------GTTCCTCAACATTCAACATGATCCAAAATTTAACAAGATATTCAAAAACGTACACACGATCC
ATTGATAAGCAACCCATGCCATAAAAACTTGCATATGTAAAATTGCATGCGCCTTTTTATGGAAACTAGCACGGATTTCA
GTGCAAACACTCCCTAAACTGACTACACATTTTCAGTACAGCGCCATCCAATTTTGTACTTCCTCCGTTCGCAAATATAA
GACGTTTTAGATATTTCACTATGGACTACATATGGGCTGACATGAGTGAGCAAACATACTAAATCGTCTCTATATACGCA
AAAAG--------AAGTTAGAACATTTTATATTTGTGAACAAAGGAAGTAGCTTTTATCCAATATAAGCAAG--------
-------------------------------------TTTTTAAACTAGAAATTGTATCGGCAAAAAGACAAATCTTCCA
AGATTACATAGTTCGTCTCCTGTGTGTTCTAGTGCTTGTCGGTCACCAGTGTGATCTGCAGTACAAATTAAACATAACAA
AGAAAAATCGAGTGGTTTTAATACCTTGTTTCGGGTCCATTTTCACCTTCCTTTGTTACCATGACAAACGAAGATCACAA
GAGCAAACGAACCAAACGGAAAGAATAGGTATAGATACTTTTATTACTGCACTAAATACCATCTTGGAGCCAGGTTTTGG
GACGAAAACTTTACCCATGGTAACCTACGACTACCTAGGTGCTACAATATTGTAGGCATATTGTAGGTATATTTGATTAT
ACCATGTGAGTACACCTGGCCATCTGCCGGGCCGGGTCGGGCTTCGGGCCGGGCCTACCAAAGCCCGAGGCAGAAAACCT
AGGTCCAAGCCCG
>chr1B_1
TAAGTTGAGCTTTTGATTTGGCCCATTGTCATATTAATGTCAAATTTGCCA-TTCTGTATCTGGAGAAATGTTTCGATTT
TTGATACCAAATTTTGTAACAGCATGCATTGATGTTGTGTCCATGTGCT---TTTTTTTTCAGTTTTCTTTCAAACATTT
TAAAATGTGTTACAACATCCGGTTACCGCTAGCACTAAAAGGGTGGGTGCACCAGATATATTCCCCCAGAATGTGCTCAA
TAAATCTTACCCAATCAGTTGAATCTTGCAGAAGTCCTGACTTGCTAATGGTATGGAGGAGGAGAATGCCGAAGCTGAAC
ACATCATGTTTAAATGAAAAAA-TACCATCTGCGATGTATTCCGGAGGTAAGTAGCCCCTGAAACGGAAATAAAGATCTC
A-GTAACATTGAGAAGAAGGAAACAAGAAATACTATCTACATATAACTGCAGCTCTTACAGTGTTCCCGCCAACTCTTGC
GTCACATTCTCAGCGACATCTTCATCCTTTTGATTCAGTATTTTAGATATCCCAAAGTCACAAATCTTAGGATTCATGTT
GGAATCCAAGAGGATGTTGTCTGGTTTCAGATCCCAATGGACAGCCCCTTTGCTGTTGGCTGGTTTCAGTATTTTAGACC
TCTCAAAGTCACAAATCTTAGGATTCATGTTGGAATCCAAGAGGATGTTGGCTGGTTTCAGATCCAAATG----------
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>chr1D_597
TGC-----------------------------------------------------------------------------
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-----------------------------------------------------------------------TAGGTGCGT
GGTCTATGGATCTTGATGTAATTTTTATTATTTTCTGGTGTTCGTTGTACTACCATGATTGAAGATGAATAGATTGGAAA
TTTTTCGG---AAAAACTATGAGCTTCAGGCTCTCTTCGCAGAAA-AAAAGAGGTTTTATAGGTAGAATGGGTCCATTCC
ACATGTACGTACGTATCACCAAAT--ATCCATCACCAATCGCAAAGTACCGAGTGCGGATTGGATACGACAAAATAAATA
GTGTATTTTT--CCGGTCTGGCGCGTGTGTTCGATCATTTCTCCTAGC-CTACCCATCGGATTCG---GACAGGCCCGAT
CCGGGTCGGG-----AACGAGGACACATGCACAGCGGGCAGCAATAAATACGTGCCCCAGGCC-----------------
TTCGCATCGTCGTCTCCATCGAACAAGGGGAAGGGATCTACCGATCGACA-----TCTCCCTCTCGCGC---GTAGGCGT
CGCGGCTGATCCAGGAACAGCCGTCAGCAATGGCGGCAGCAGCTCTTCTCCCGCCGCTGCTCCCGTCGCCACCGAGGAGC
GAGATGCCGCCGCTGCTCCCGACGCCGCCCAGGAGCGAGATGCTGCCGCTGTTGCCGACGCCGCACGGTGTCATCCTCAC
CATGCTGGTGTCCGCCATGGCAGGCCGCGCCGACTTCGTCAAGAGGTGGGACTGGAACAAGAAACGCGACAATAATCCAT
GCAGCTCAATCTGCTCCTCCTC---------CTCGTCGTCGTC---GGGCAGTGGGAGCCCCGGACGCGCTGACTCCGTC
GACAGGTGGGACTCGCACAAGAAATACAAG-GCGCCCCGCACCACCATGTCG---------TCGTCGTCGTCTTCTTCGT
CAC------ACGGCGCCGGTAGCCCCCGACGCGCCGACTCCGTCGAACGCTGGGAGAGCAAGAAA---CTCGAGACCTCG
------------CCGCCCAAGGATCG------TGGCCGCCATGTCGGCAAC---AGCAAGCGCCTGCCTAGCCCTAGCCG
--------CGCGTCCTCGGCGGAGCGCTGGGACTTGCACAAGAAACCTCGCCCGGAGCAGGAGCAGATGGAGAAGCCGCC
TCAGACTAA---C---ATGACAG---------------------CGAC---GACGCCGCAGAAGGCCACGTTCGCCGGAC
CCAGCTTCCACGCCTCGCCTGACCCGAGCATGCTCCCCATGCCCTCCTTGTTTCTGCTGGCACGTCCGCGTGCACTCTGT
ACT-AGTA---ACT--------AAGTTCACCACGGCGATCTAGTTTCTTCCT--------GAGGAGTAGACGAGTGGTGC
TGTACG-TA--GTCGTAGGGTGTGGAATT--------CAATCACATCATATAT---GTA-GTGCCTTTTATTTCATCTCA
GCTAGTGAAAAGCATCGAACTCCACAG-------------------------------CATTTGGCCG----ATG--CTA
CTCGTGGTGTTGTGATTCCAATGTAACCAAAATATA-GGAAGGATGTTTAGTTTTCATGAATTTTTTCAGGGTCATTTTT
CTGCAAGTTTTTTTACTGTACCTCAGCGTTCGGTCTGAAGTTAACCAAATAAC----AAACCACATTTACCGAATGACCG
TACTACCAGTACCAAACAGTATTTACGCAAATAACCGAATTACCGGAGGCACAACCGTATATATGTGTCATGGGGTAGAA
GTAGAAATGGCAC--AAAACTAACGTTAA--GACCGCCATAGAACAGATCAATGCACATCCCACGCACATGGGATACACA
AAAATCAGATCCAGCAAGGTTCCTCAACATTCAACATGATCCAAAATTTAACAAGATTTTAAAAAACATGGACAAGATCC
ATTGATAAGCAACCCATGCCATAAAAACTTGCATATACAAAATTGCATGCGCCTTTTTATGAAACTCACTGTGGATTTCA
GTGCAAGCACTCCCTAAACTAACTACATATTTTCAGTACAGTGTCATCCAATTTTGTACA----CCGTTCACAAATATAA
GATGTTTGAGATATTTCACTATGGAGTACATACTGGCTGACATGAGCGAGCAA-CATATTAAATCGTGGCTATATATATC
CCACTCAGAAAAAAAGTTAGAACATCTTATATTTGTGAACAAAGGAAGTAGCTTTGGTCCAATATATACATATACATTGA
TGGACAAGAAAATATTTCCAGTATAGTGCCATCCAATTTTTTAAACTAGAAATCGTGTCAGCAGAAAGAAAAATCAACCA
AGACTACATATTTCGTCTCCTGTGTATTCTAGTGCTTGTCCGTCGCCAATGTGACCTACACTACAAATTATACCGAACAA
AGAAAAATTGAGTGGTTTCTATACCTTATTCCGGGTCCATTTTCACCTTCCTTCGTTACCATGACAAACGAAGATCACAA
GAGCAAACCAACCAAACGGAAAGAATACCTCTAGATACTTTTAGTATGACACTAAGTACCATCTTGTAGCCAGGTTTTGA
GACGAAAACTTTACCCGTGCTAACTTACGACTACCTAGGTGCTACAATATTGTAGGTATATT------------------
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>chr1B_827
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-------------------------------------------------------------GGATACGGCAAAATAC--A
GTGTTTGTTT--CCGGTCTGGCGCGTGGCTTGGATCATTTGCGTGTCCACTGCTCATCGGATTCGGATGACAGGCCCGAT
CCGGGTCGGGTCGGGAACGAGCACACATGCACGGC-GGCAACAATAAATACGTGCCCCAGGCCATTGCGTTGTGGCGTTC
TTCGCATCGTCGTCTCCATCAAACAAGGGATCTACCGAT--CGACATCGTCTCTCTCTCTCGCGCGCGC---GTAGGCGT
CGCGGCTGATCCAGGAACAGCAGTCAGCAATGGCGGCAGCAGCTCTTCTCCCGCGGCTGCTCCCGACGCCACCGAGGAGC
GAGATGCCGCCGCTGCTCCCGACGCCGCCCAGGAGCCAGATGCTGCCGCTGCTGCCGACGCCGCACGGTGTCATCCTCAC
CATGCTGGTGTCTGCCATGCCAGGCCGCGCCGACTTCGTCAAGAGGTGGGACTGGAACAAGAAACGCGACAACAATCCAT
GCAGCTCAATCTGCTCCTCCTCCTCCTCCTCGTCGGTGGGCAGC---GGGAGCGGGAGCGCCTGCCGTGCCGACTCCGCC
GGCAGGTGGGACTCGCACAAGAAGTACAAG-GCGCCCCGCACCACCATGTCG---------TCGTCGTCGCCTTCTTCGT
CAC------AGGGCGCAGGGAGCCCCGGACGCGCCGACTCCGTCGAACGCTGGGACAGCAAGAAA---CTCGAGACCTCG
------------CCGCCCACGGATCGACATCGCGGCCGCCATGTCGGCAAC---AGCAAGCGCCTGCCTAGCCCTAGCCG
--------TGCGTCCTCGGCAGAGCGCTGGGACTTGCACAAGAAGCCTCGCCCGGAGCCGGAGCAGATGGAGAAGTGGCC
TCAGACCAA---C---GCGGCAGCGACGACGCCGGCGCTAGCCACGAC---GACACCGCACAAGGCCGCGTTCGCCGGGC
CCAGCTTCTACGCCTCGCCTGAGCCGAGCATGCTCCCCATGCCCTCCTTCTTTCTGCTGGCACGTCCGCGTGCACTCTGT
ACT-AGTAGTAACT--------AAGTCCACTACTGCGCTCTAGTTTCTTCCT--------GAGGAGTAGACGAGTAGTGT
TGTACACTT--GTACTAGGATGTGGAATT--------CAATCCCGTGA--CTT---GAA-AACCCTTTTATTTCATCTCA
GCTCGTGAAAAGCATCGGACGCCACAG-------------------------------CATTTGGCTGATGCATG--CTA
CCCCTGGCGTTACGATTCCAGTGTAACCCAAAGTATCGGAAGGATGTTTAGTTTTCATGAATTTGTTCACGGTCATTTTT
CT------------------------------------------------------------------------------
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>chr6D_984
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---------------------------------------------------------------ATTGCTTTGTGGCGTTC
TTCCCA---TCGTCTCCATCAAACAATCCATCGAGG------CATCGACA-----TCTCCCTCTCGCGC---GTA--CGT
GCCGGCTGATCCACGAACAGCAATGGCGGCAGT-AGCAGAAGCTGTTCTCCCGCCGCTGCTCCCGACGCCGCCCAGGAGC
GAGATGCTGCCGATCCTCCCGACGCCGCCCAAGAGCAAGATGCTGCCGCTGTTGCCGACGCCGCACGGTGTCGTCCTCAC
CATGCTGGTGTCCGCCATGCATGGCCGCGCCGACTTCGTCCAGAGGTGGGACTGGAACAAGACGGG---CAAAAAGCCAT
GCAGCTCCATCTGCTCCTCCTC---------GTCGTCGTCGTC---GGGCAGCGAGAGCATCGGTCATGCCGACTCCGTC
GACAGGTGGGACTCGGACAAGAAATACAAG-AAGCCCCGCACCACCGTGTCG---------TCATCGTCGTTGTCATCGT
CATCTTCATACAGCGCCGGGAGCCCCGGACGCGCCGACTCCGTCGAACGCTGGGACAGCAAGAAA---CTCGCGACCTCG
TGCAGCGCGTCCCCGCCCGCAG------GTCGCGGCCGCCATGACGGCAAC---AACAAGCGCCTTCCTAGCCCTGGTCG
--------CGCATCCTCGGCAGAGCGCTGGGACTTACACAAGAAGCCTCATCCGGAGCAC------ATG---------CC
TCAGACTAA------------------------GGCTACCGCC---AC---GGCACCGCAGAACTCCGTGTTCGCCGGGC
CAAGCTTCTACGCGTCGCCGGACCCCAGCATGCTCCCCATGCCCTCCTTCTTTCTGCGCGCACATTAGCCTTCACTCTGT
ACT-----------------------------------------------------------------------------
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>chr6B_984
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---------------------------------------------------------------ATTGCTTTGTGCCGTTC
TTCGCA---TCGTCTTCATCAAACAA------------T--CCATCGACA-----TCTCCCTCTCGGGC---GTA--CGT
GCCGGCTGTTCCACGAACAGCAATGGCGGCCGT-AGCAGGAGCTCTTCTCCCGCCGCTGCTCCCGACGCCGCCCAGGAGC
GAGATGCTGCCGATCCTCCCGACGCCGCCCAAGAGCAAGATGCTGCCTCTGTTGCCGACGCCGCACGGTGTCGTCCTCAC
CATGCTGGTGTCCGCCATGCATGGCCGCGCCGACTTCGTCCAGAGGTGGGACTGGAACAAGACGGG---CAAAAAGCCAT
GCAGCTCCATCTGCTCCTCCTCCTCCTCGTCGTCATCGTC------AGGCAGCGAGAGCACCGGTCGTGCCGACTCCGTC
GACCGGTGGGACTCGGACAAGAAACACAAGAAAGCCACGCACCACCGTGTCG---------TCGTCATCGT---CATCGT
CATCTTCATACAGCGCCGGGAGACCCGGACGCGCCGACTCCGTTGAACGCTGGGACGGCAAGAAA---CTCGCGACCTCG
TGCAGCTCCTCCCCGCCCACAG------GTCGTGGCCGCCATGACGACAAC---AACAAGCGCCTTCCTAGCCCTGGTCG
--------CGTGTCCTCAGCAGAGCGCTGGGACTTACACAAGAAGCCTCGTCCGGAGCAC------ATG---------CC
TCAGACTAA------------------------GGCGACCGCC---AC---GACACCGCAGAAGTCTATATTCGCCGGGC
GCAGCTTCTACGCGTCGCCGGACCCCAGCATGCTCCCCATGCCCTCCTTCTTTCTGCTCGCACATTAGCCTTCTTTCTGT
A----------GTAATTGTTACAAGTCCATCACGGCGATCTAGTTCCTTCCC--------GAGGAGTAGTGCTG------
--------T--GTAGTAGGATGTGTAATTGTTTGATTCAATCCCATAACTCTT---GTA-ATCCCTTTTATTTCATCTCA
CCTAGTGAAAA---------------------------------------------AACATTTGGCCG----ATG--CTA
CTTCTGGTGTTATGATTCCAATGTAACCAAAATATA-GG-----------------------------------------
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>chrUn_1069
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------------------------------------------------------------------------------GT
GGCGGCTGATCCACGAACAGCAATGGCGGCAGT-AGCAGGAGCTCTTCTCCCGCCGCTGCTACCGACGCCGCCCAGGAGC
GAGATGCTGCCGATCCTCCCGACGCCGCCCAAGAGCAAGATGCTGCCGCTGTTGCCGACGCCGCACGGTGTCGTCCTCAC
CATGCTGGTGTCCGCCATGCATGGCCGCGCCGACTTCGTCCAGAGGTGGGACTGGAACAAGACGGG---CAAAAAGCCAT
GCAGCTCCATCTGCTCCTCCTC---------GTCATCGTC------GGGCAGCGAGAGCACCGGTCGTGCCGACTCCGTC
GACAGGTGGGACTCGGACAAGAAATACAGG-AAGCCCCGCACCACCATGTCG---------TCCTCGTCGTCGTCCTTGG
CATCGTCTTATAGCGCCGGGAGCCCTGGACGCGCCGACTCCGTCGAACGCTGGGACAGCAAGAAA---CTCGCTACCTCG
T---------CCCCGCCCACAG------GTCGCGGCTGTCATGACCGCAAC---AACAAGCGCCTGCCTAGCCCTGGCCG
--------CGCGTCCTCGGCGGAGCGCTGGGACTTGCACAAGAAGCCTCGTCCAGAGCAC------AAG---------CC
TCAGACTAA------------------------CGCGACGGCC---AC---GGCACCGCAGAAGTCCATGTTCGCCGGGT
CCAGCTTCTACGCCTCGCCGGACCCGAGCATGCTCCCCATGCCCTCCTT---TCTGCGCGCACATTAGCCTTCACTCTGT
ACT-ACAAGTAGTAATTGTTACAAGTCCACCACGGCGATCTAGTTCCTTCCT--------GAGGAGTAG-----------
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>chrUn_1072
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-GCGGCTGATCCACGAACAGCAATGGCGGCAGT-AGCAGGAGCTCTTCTCCCGCCGCTGCTACCGACGCCGCCCAGGAGC
GAGATGCTGCCGATCCTCCCGACGCCGCCCAAGAGCAAGATGCTGCCGCTGTTGCCGACGCCGCACGGTGTCGTCCTCAC
CATGCTGGTGTCCGCCATGCATGGCCGCGCCGACTTCGTCCAGAGGTGGGACTGGAACAAGACGGG---CAAAAAGCCAT
GCAGCTCCATCTGCTCCTCCTC---------GTCATCGTC------GGGCAGCGAGAGCACCGGTCGTGCCGACTCCGTC
GACAGGTGGGACTCGGACAAGAAATACAGG-AAGCCCCGCACCACCATGTCG---------TCCTCGTCGTCGTCCTTGG
CATCGTCTTATAGCGCCGGGAGCCCTGGACGCGCCGACTCCGTCGAACGCTGGGACAGCAAGAAA---CTCGCTACCTCG
T---------CCCCGCCCACAG------GTCGCGGCTGTCATGACCGCAAC---AACAAGCGCCTGCCTAGCCCTGGCCG
--------CGCGTCCTCGGCGGAGCGCTGGGACTTGCACAAGAAGCCTCGTCCAGAGCAC------AAG---------CC
TCAGACTAA------------------------CGCGACGGCC---AC---GGCACCGCAGAAGTCCATGTTCGCCGGGT
CCAGCTTCTACGCCTCGCCGGACCCGAGCATGCTCCCCATGCCCTCCTT---TCTGCGCGCACATTAGCCTTCACTCTGT
ACT-ACAAGTAGTAATTGTTACAAGTCCACCACGGCGATCTAGTTCCTTCCT--------GAGGAGTAG-----------
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>chrUn_1072
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-GCGGCTGATCCACGAACAGCAATGGCGGCAGT-AGCAGGAGCTCTTCTCCCGCCGCTGCTACCGACGCCGCCCAGGAGC
GAGATGCTGCCGATCCTCCCGACGCCGCCCAAGAGCAAGATGCTGCCGCTGTTGCCGACGCCGCACGGTGTCGTCCTCAC
CATGCTGGTGTCCGCCATGCATGGCCGCGCCGACTTCGTCCAGAGGTGGGACTGGAACAAGACGGG---CAAAAAGCCAT
GCAGCTCCATCTGCTCCTCCTC---------GTCATCGTC------GGGCAGCGAGAGCACCGGTCGTGCCGACTCCGTC
GACAGGTGGGACTCGGACAAGAAATACAGG-AAGCCCCGCACCACCATGTCG---------TCCTCGTCGTCGTCCTTGG
CATCGTCTTATAGCGCCGGGAGCCCTGGACGCGCCGACTCCGTCGAACGCTGGGACAGCAAGAAA---CTCGCTACCTCG
T---------CCCCGCCCACAG------GTCGCGGCTGTCATGACCGCAAC---AACAAGCGCCTGCCTAGCCCTGGCCG
--------CGCGTCCTCGGCGGAGCGCTGGGACTTGCACAAGAAGCCTCGTCCAGAGCAC------AAG---------CC
TCAGACTAA------------------------CGCGACGGCC---AC---GGCACCGCAGAAGTCCATGTTCGCCGGGT
CCAGCTTCTACGCCTCGCCGGACCCGAGCATGCTCCCCATGCCCTCCTT---TCTGCGCGCACATTAGCCTTCACTCTGT
ACT-ACAAGTAGTAATTGTTACAAGTCCACCACGGCGATCTAGTTCCTTCCT--------GAGGAGTAG-----------
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>chr1A_1093
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-------------------------AGCAATGGCAGCAGCAGTTCTTCTCCCGCCGCTGCTCCCTACGCCGCCGAGGAGC
GAGATGCTGCCGATCCTCCCGACGCCGCCCAAGAGCGTGATGCTGCCGCTGTTGCCGACGCCGCACGGCCTCGTTCTCAC
CATGCTGGTGTCCGCCATGCCAGGCCGCGCCGACTTCGTCAAGAGGTGGGACTGGAACAAGAAGTG---CCCAAACCCAT
GCAGCTCAATCTGCTCGTCGTT---------GT---------CGGAGGGCAGCAGGAGCACCGACCGTGCCGACTCCGTC
GAGAGGTGGGACTCGCACAAGAAATACAAG-AAGCCCTGCACCACCATGTCG---------TCGTCGTCGTC--------
-AC------ACAGCGACGGGAGCCCCGGACGCGCCGACTCCGTCGAACGCTGGGACAGCAAGAAA---CTCGCGACCTTG
TGCAGCGCGACCCCGCCCACGG------ATCGCGGCCGCCATGACGGCAAC---AACAAGCGCCTGCCTAGCCCTAGCCG
--------CGCGTAC---GCGGAGCGCTGGGACTTACACAAGAAGCCTCGCCCGGAGCAG------ATGGAGAAGCTGCC
TCGGACTAA---A---GCGGCAGCGACGACGCCGGCGCTAGCC---AC---GACACCGCAGAAGGCCATGTTTGCCGGTC
CTAACTTCCACGCCTCGCCGGATCCGAGCATGCTCCCCATGCCCTCCTTCTTTCTGCTGGCACGTTCGCGTGCACTCTGT
ACT-AGTA---ATT--------AAGTCCATTACGGCGATCTAGTTCCTTCGT--------GAGGAGTAG-----------
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>chr1A_1093
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-------------------------AGCAATGGCAGCAGCAGCTCTTCTCCCGCCGCTGCTCCCTACGCCGCCGAGGAGC
GAGATGCTGCCGATCCTCCCGACGCCGCCCAAGAGCGAGATGCTGCCGCTGTTGCCGACGCCGCACGGACTCGTCCTCAC
CATGCTGGTGTCCGCCATGCCAGGCCGCGCCGACTTCGTCAACAGGTGGGACTGGAACAAGAAGTG---CCAAAAGCCAT
GCAGCTCAATCTGCTCGTCGTC---------TTCGTCGTCG---GAGGGCTGCGGGAGCACCGATCGTGCCGGCTCCGTC
GAGAGGTGGGATGCGGACAAGAAATACAAG-AAGCCCCGCACCATCATGTCC---------TCA---------TC-----
----GTCATACAGCGCCGGGAGCCCCGGACGCGCCGACTCCGTCGAACGCTGGGACAGCAAGAAA---CTCGCGCCCTCG
TGCAGCGCGTCCCCGCCCACGG------ATCGCGGCCGCCATGACGGCGAC---AACAAGCGCCTGCCTAGCCCTAGCCG
--------CG--------GCGGAGCGCTGGGACTTACACAAGAAGCCTCGCCCGGAGCAG------ATGGAGAAGCTGCC
TCGGACTAA---A---GCTGCAGCGACGACGCCGGCGCAAGCA---AC---GACACCGCAGAAGACCATGTTCGCCGGGC
CCAACTTCCACGCCTCGCCGGATCCGAGCATGCTCCCCATGCCCTCCTTCTTTCTGCTGGCACGTTCGCGTGCACTCTGT
ACT-AGTA---ATT--------AAGTCCATTACGGCGAT--AGTTCCTTCGT--------CAGGAGTAG-----------
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>chr1D_1093
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-------------------------AGCAATGGCAGCAGCAGCCCTTCTCCCGCCGCTGCTCCCTACGCCGCCGAGGAGC
GAGATGCTGCCGATCCTCCCGACGCCGCCCAAGAGCGAGATGCTGCCGCTGTTGCCGACGCCGCACGGTCTCATCCTCAC
CATGCTGGTGTCCGCCATGCCAGGCCGCGCCGACTTCGTCAACAGGTGGGACTGGAACAAGAAGTG---CCAAAAGCCAT
GCAGCTCAATCTGCTCCTCGTC---------TTCGTCGTCA---GAGGGCCGCAGGAGCACTGATCGTGCCGGCTCCGTC
GAGAGGTGGGATACGGACAAGAAATACAAG-AAGCCCCGCACCACCATGTCC---------TCA---------TC-----
----GTCATACAGCGCCGGGAGCCCCGGACGCGCCGACTCCGTCGGACGCTGGGACAGCAAGAAA---CTCGCGACCTCG
TGCAGCACGTCCCCGCCCACGG------ATCGCGGCCGCCATGACAGCAAC---AACAAGCGCCTGCCTAGCCCTATCCG
CTCGTCCTCG--------GCGGAGCGCTGGGACTTACACAAGAAGCCTCGCCCGGAGCAG------ATGGAGAAGCTGCC
TGGGACTAA---A---GCGGCAGCGACGACGCCGGCGGAAGCA---AC---GACACCGCAGAAGGCCATGTTTGCGGGGC
CCACCTTCCACGCCTCGCCGGATCCGAGCATGCTCCCCATGCCCTCCTTCTTTCTGCTGGCACGTTCGCGTGCACTCTGT
ACT-AGTA---ATT--------AAGTCCATTACGGCGATCTAGTTCTTTCGT--------CAGGAGTAGTGC--------
--------T--GTATTAGGATGTGGAATT--------CAATCCCATAA--CTT---GTA-ATCCCTTTTATTTCATCTCA
CCTAGTGGAAAGCAT-----------------------------------------------------------------
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>chr1B_1253
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-------------------------CGCGCCGACTCCGTCGAGAGGTGGGACTGGAACAAGAAGTG---CAAGAAGCCAT
GCGGCTCCATCTGCTCCTCGTC---------GTCGTCGTCGTCGGAGGGCAGCGGGAGCACCGGTCGCGCCGACTCCGTC
GACAGGTGGAACTCGGACAAGAAATACAAG-AAGCCCCGCACAGCCATGTCGTCATCGTCGTCA---------TC-----
----GTCATACAGCGCCGGGAGCCCCGGGCGCGCCGACTCCGTCGAACGCTGGGACAGCAAGAAGAAGCTGGCGACCTCG
TGCAGCGCGTCCCTGCCCACAG------ATCTCGGCCGCCATGACGACAAC---AACAAGCGCCTGCCTAGCCCTAGCCG
--------CGCGTCCTCGGTGGAGCGCTGGGACTTGCACAAGAAGCCTCGCCCGGAGCAG------ATGGAGAAGCTGCC
TCGGACTAATAAC---GCAGCAGCGACGACGCTGGCGCTAGCC---AC---GACCTCGCAGAAGGCCATGTTCGCCGGGT
CCAACTTTCACGCCTCGCCGGATCCGAGCATGCTCCCCATGCCGCCCTTCTTTCTGCTGGCACGTTCGCGTGCGCTCTGT
ACA-AGTC---ATT--------AAGTCCATTACAGCGATCTAGTTCCTTTCCTTTGTGATGAGGAGTAGTGCTG------
--------TAGTAG------------------------------------------------------------------
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>chr1B_1253
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-------------------------CGTGCCGACTCCGTCGAGAGGTGGGACTGGAACAAGAAGTG---CAAGAAGCCAT
GCGGCTCCATCTGCTCCTCGTC---------GTCATCGTCGTCGGAGGGCAGCGGGAGCACCGGTCGCGCCGACTCCGTC
GACAGGTGGAACTCGGACAAGAAATACAAA-AAGCCCCGCACCGCCATGTCG---------TCATCGTCGTCGTC-----
----GTCATACAGTGCCGGAGGCCCCGGGCGCGCCGACTCCATCGAACGCTGGGACAGCAAGAAGAAGCTCGCGACCTCG
TGCAGCGCGTCCCTGCCCACAG------ATCGCGGCTGCCATGACGACAAC---AACAAGCGCCTGCCTAGCCCTAGCCG
--------CGCGTCCTCGGTGGAGCGCTGGGACTTGCACAAGAAGCCTCGCCCAGAGCAG------ATGGAGAAGCTGCC
TCGGACTAATAACACGGCAGCGACGAAGACACCGGCGCTAGCC---AC---GACACCACAGAAGGCCATGTTCGCCGGGC
CAAACTTTCACGTCTCGCCGGATCCGAGCATGCTCCCCATGCCGCCCCTGTTTCTGCTGGCACGTTCGCGTGCGCTCTGT
ACA-AGTC---ATT--------AAGTCCATTACAGCGATCTAATTCCTTTCCTTTGTGATGAGGAGTAGTGCTG------
--------TACGTAGTAGGATGTGGAATT--------CAATCCCATAA--CTTCTTGTG-ATCCCTTTTGTTTCATC---
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>chr1B_1253
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-------------------------CGTGCCGACTCCGTCGAGAGGTGGGACTGGAACAAGAAGTG---CAAGAAGCCAT
GCGGCTCCATCTGCTCCTCGTC---------GTCATCGTCGTCGGAGGGCAGCGGGAGCACCGGTCGCGCCGACTCCGTC
GACAGGTGGAACTCGGACAAGAAATACAAA-AAGCCCCGCACCGCCATGTCG---------TCATCGTCGTCGTC-----
----GTCATACAGTGCCGGAGGCCCCGGGCGCGCCGACTCCATCGAACGCTGGGACAGCACGAAGAAGCTCGCGACCTCG
TGCAGCGCGTCCCTGCCCACAG------ATCGCGGCTGCCATGACGACAAC---AACAAGCGCCTGCCTAGCCCTAGCCG
--------CGCGTCCTCGGTGGAGCGCTGGGACTTGCACAAGAAGCCTCGCCCAGAGCAG------ATGGAGAAGCTGCC
TCGGACTAATAACACGGCAGCGACGAAGACACCGGCGCTAGCC---AC---GACACCACAGAAGGCCATGTTCGCCGGGC
CAAACTTTCACGTCTCGCCGGATCCGAGCATGCTCCCCATGCCGCCCCTGTTTCTGCTGGCACGTTCGCGTGCGCTCTGT
ACA-AGTC---ATT--------AAGTCCATTACAGCGATCTAATTCCTTTCCTTTGTGATGAGGAGTAGTGCTG------
--------TACGTAGTAGGATGTGGAATT--------CAATCCCATAA--CTTCTTGTG-ATCCCTTTTGTTTCATC---
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>SNPs
-------S---------------------------S------------S--S--S-------S---S-------S--S--
-------SS--------S---S------S------------S-------SSS--S------------------------S
---------S--------S----S----S--------S---------------S----S-------S-------------
-S-----------------------------S--------------------------------------S----S----
----------------------S-----------S----------S-----S------------S---------SSSSSS
SS----S--------------------------------SS-----------------------S---------------
-----SS-------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S---------
------S------S-------------------SSS------S---------------------S-----------S--S
-----S--SSS----------------SS-----S------S---S-----S------------------------S---
-----------------------SSS---------------------S--S-----------------------------
----------SS------------------------------------S------S-----------S---S--------
--------------------------------------------------S------------------S----------
-----------S-------------------------------------------------------S-SSS--------
----------------S----S-----------------S-------------S--------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S-------------------------------------------S---S
---------------------------------------------------SSS--------------------------
--------------S--------S--------------------------------------------------------
-----------------------------------------------SSSS-----------------------------
--------------S-----------------------------------------------------------------
---S----------------------------S-----------------S----------S------------------
----S------------------S---S-------------------SSS--S-S-S--S------S-------------
---------------SS-SS-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S---------SSSSS--S
---S-----------------------------------S----------------------------------------
-------------------------------S--S----------S--S---SSSSS-----S--S--------------
-------------------------S---------------S---S------S-----------------S---------
-S---------SSSS-------------SSS---S------S---------S----S-------S-------S-S-----
---------------------------------------------------------S--S------S-SS---S-----
------------------------------------SS-----------------------S--SSS-SSSS--------
------S-------------S------S-------------S-S---------------SSSSS------S---------
--S----S-----------------S------SS------------S------S----S--------SS-------SSSS
SS-SS--------------------S-----------------------------SS---------SS--SS--------
-----------------------------------------------------S--S--S---S-----S-----SS---
---S------S--------------S--------------S---S---S-----S--S--S---------S--SS-----
--------S---------SS-------S--S----------------------S--------------------------
--------S------------------SS-S------------S--SSS------S----------S------------S
----------------S--S----S-------------------------------S-----SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS
>forward_316
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--------------------------------------------------------AGGAGGAGAATGCCAAAGCC----
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>reverse_1784
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-----------------------CCGCTGGGACTTACACAAGA-------------------------------------
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>forward_495
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---------------------------------------------------------------------------CTTGC
GTCACTCTCTCAGCA-----------------------------------------------------------------
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>reverse_2176
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---------------TTGGTTGGCCGATGCTACTC---------------------------------------------
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>forward_1431
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---------------------------------------------------CTGGAACAAGAAACGCGACG---------
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>reverse_3434
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-------------------------------------------------------------------------AAAACCT
AGGTCCAAGCCCG
