>input_sequence_60204
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-----------------------------------------------------------------ATGAAGCCCATCCCT
CTGATGACGCCGTACACGATGGGCGAGTTCGACCTGTCGCACAGGGTCGTGCTGGCACCCCTCACGCGGCAGCGCGCCTA
CGGCGGCGTGCCGCAGCCGCACGCCGCCCTGTACTACTCCCAGCGCGCCTCCCCCGGCGGCTTCCTCATCTCCGAGGCCA
CGCGGGTTTCGCCGCCGTCCTCGCGGCAGGAGGAGCCGGAGTCGTCTTTCGGGAACATCCCCGGGATCTGGGCGCCGGAG
CAGGTCGGGGCCTGGGCGCCCGTGGTGGACGCCGCGCACGCCAAGGGCGCCGTCTTCTTCTGCCAGCTCTGGCACGTCGC
CG---------GCGATGCCGTCCGGCAACGGGAGCAGCAGGTGAGTCCCCAGATGAGCTTCGACGGCCGCCGCAAGGAGC
TGACGTCGCCGAGGAGGGTGGCGCAGGAGGAGGCTCCCCGCGTCGTCGATGGGTTCAGACGCGCCGCCCGGAACGCCGTC
GACGCCGGTACGTGCGCGCGCGTGGGCCGGAAACCGTTGCTTCAGTTACTACAGTAGGGATTTTTCTGCGCTCACTCCTT
GCATGC-------------------------------------CCCATGCCAGGCTTCGACGGCGTCGAGATCCTCGGCG
CCAACGGCTACTTTGTCGACGGCGGCGGCATGGACATGGAGAGCTGGTGCCGGTTCGCGCTGGATGTGGTGAACGCCGTG
GTGCGGGAGATCGGCGGCCAGCGCGTGGGCGTGCGGCTGGACCAGTTCAGCGCCGAGCCCGACGAGCACGCGCTGGCGCT
CCACGTGGTGAGCCGGCTCAACGACCACGGCGTGCTCTACTGCCACATGATCGAGCCGAGGGTGGACGGCCGGCGGCGCG
TGTCCCGGCAGCTGCTGCCGTTCAGGGAGGCGTTCGGCGGCACGTTCATCGCCAGCGGCGGGTACGGGCGAGAGGAGGGC
GACGCGGCCGTCGGCGAGGGTTACGCCGACCTGGTGGCGTACGGGCGGCTGTTCCTGGCCAACCCGGACCTGCCGAGGAG
GTTCGAGCTCGGCGCACCGCTCAACGACTGCGTCAGCGCCACCTTCTACGGCGCCGGCGCCGG---CGCCGACCCCGCCG
TCGGGTACACCGACTACCCGTTCCTCGAATGA------------------------------------------------
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-----------------------------------
>chr7D_1_TraesCS7D01G524600
TAAGTGATAAATTCATTGGCTATATCTTGAGGGCCAAAAAGATCTCTCCCTTGACTATCCATAATGGAAACAATCCTATT
TCTTCTC---CTCTTGTTGACTGCCTGATGGAAAAAAGTTGTGTTCCTGTCACCTTGTGTGACCGAAT--------GCTT
TTTGGCTCTTTGCTTATAGAATTCGTTTAACTTTGTCATGCTTCCTTCATATTGGGCTACCAGGTTCGCTTCAAGAGTAT
AGTCATGTTGATCTAGAGGCTGCATCTGAATATTATTAATTTGATTCTGCAACTGATGAAGTTGCTGCTGAAGTGGCATT
TT-CTTTTTGCACCACAGTTTGAGAGTACGTGCAAGATGGTTAGTGCGTACATGGAAAGGTTTTGTGGTAGTAGAAGCCC
AATCATTCTTTGCAACAGATTGATAATCTCCCACAAAAAGCCACCAATTTTCAAATTTGAAGGTGAGCCAGGGCCTTTTA
AACTTAGACTCAGTTGAAAGTAAGATAGGTGCATGATCGCTAAAACTATGAATAATGGGCATGTTGAAAACATTTGTTGT
GGGGAACAAAGCGCACCATTCAGCATTAGCGAGACAGAGACCGAGACGTTCAAAAATAGGACTAGAAGAAAATCTCATGT
TGGTCCAAGTGTAAGCAGGTCCAGAAAAGCCCAGATCTGC-------------TTTACATAATTATTAAAAGCTTGCATA
CGAGTGTAATTAACGTTAGCTCCATAGGATTCTCTTTTATGCATAATATTATTTAGGTGTAGCACCTTTACTCGTTGAGA
CAGGAGCAAAGATGAGCTCGCGTGCTAGGCAGCTACTCAACTTGCTGTTATACTAGTATATCCGACATATATACTCTATA
TTTTAACCGCACCATTTGCAAGAATGGATCAGAAGCTTGCTACCAAGTGGTCAGCTTGGTAAGCTATCAACAAAAAATTA
CAATTGCTGAAGCTTGCTGACCACTGAAGATCGGCAGGGCTCGCAACACTGTTTCACACGGAGAGATGAAGCCCATCCCT
CTGATGACGCCGTACACGATGGGCGAGTTCGACCTGTCGCACAGGGTCGTGCTGGCACCCCTCACGCGGCAGCGCGCCTA
CGGCGGCGTGCCGCAGCCGCACGCCGCCCTGTACTACTCCCAGCGCGCCTCCCCCGGCGGCTTCCTCATCTCCGAGGCCA
CGCGGGTTTCGCCGCCGTCCTCGCGGCAGGAGGAGCCGGAGTCGTCTTTCGGGAACATCCCCGGGATCTGGGCGCCGGAG
CAGGTCGGGGCCTGGGCGCCCGTGGTGGACGCCGCGCACGCCAAGGGCGCCGTCTTCTTCTGCCAGCTCTGGCACGTCGC
CG---------GCGATGCCGTCCGGCAACGGGAGCAGCAGGTGAGTCCCCAGATGAGCTTCGACGGCCGCCGCAAGGAGC
TGACGTCGCCGAGGAGGGTGGCGCAGGAGGAGGCTCCCCGCGTCGTCGATGGGTTCAGACGCGCCGCCCGGAACGCCGTC
GACGCCGGTACGTGCGCGCGCGTGGGCCGGAAACCGTTGCTTCAGTTACTACAGTAGGGATTTTTCTGCGCTCACTCCTT
GCATGC-------------------------------------CCCATGCCAGGCTTCGACGGCGTCGAGATCCTCGGCG
CCAACGGCTACTTTGTCGACGGCGGCGGCATGGACATGGAGAGCTGGTGCCGGTTCGCGCTGGATGTGGTGAACGCCGTG
GTGCGGGAGATCGGCGGCCAGCGCGTGGGCGTGCGGCTGGACCAGTTCAGCGCCGAGCCCGACGAGCACGCGCTGGCGCT
CCACGTGGTGAGCCGGCTCAACGACCACGGCGTGCTCTACTGCCACATGATCGAGCCGAGGGTGGACGGCCGGCGGCGCG
TGTCCCGGCAGCTGCTGCCGTTCAGGGAGGCGTTCGGCGGCACGTTCATCGCCAGCGGCGGGTACGGGCGAGAGGAGGGC
GACGCGGCCGTCGGCGAGGGTTACGCCGACCTGGTGGCGTACGGGCGGCTGTTCCTGGCCAACCCGGACCTGCCGAGGAG
GTTCGAGCTCGGCGCACCGCTCAACGACTGCGTCAGCGCCACCTTCTACGGCGCCGGCGCCGG---CGCCGACCCCGCCG
TCGGGTACACCGACTACCCGTTCCTCGAATGATCGAGCTCGAATACTGCTTTCGTCATTGGCAGTTCACCAATCCGGTCG
TATCTCACACAATAAACCATGATCGAATGGTGGCTTCAAATGTCCATTTCGGCCATGATCGAAATTTTTTATTTGAACTC
GATCGAGATCCAAGGAATTTCACTTTTTTTTAAACACATGACGACATTTTGTTACATACCAAAATGGTTATTTTTTCTCT
TTTCTCTTTTGAAAATTTACTTTTATAAGGGCTCTTTTGAAATTTTACTGAAAAGTAAGGACCAACATCATTTTTTATGG
TTACTAGCAAGAGAGTTCATGCGTTGCCACATGAGAA--AAATAAT---ACCACACG-CCCTAACACAATAACCATGACT
CAAGACCTTAATAGGTCCATGTCCTTT-ATTTCAACATGACATCTTATCATTCTTGCCCTTTATCCGT-TTCACACTCCC
GCCGACGGAAATGCATGGTCATAAATGGTTTCTTTTGTCTCCAATTTGTT-TT--TTTATGTGTTCATTTTCAATTTGAA
TCGGCATCGGTACGAAAGAAAGACGGGTCGTGCACTACTGATTAACATTGCATCCTAAATAACATTTAGAAAATTATTAG
CATGTGAAACATCAT---ATTCAGATTATGCGCATATTTCTAATTAATTTTCACATATGACATGTTAAAATTTGAGTTAG
GGTTTAAAAGATACGAATATTT-TTT-GAAGCATCTGAATCTGTCCCTAAACAATATTTAAAAATGAGTAACAGGT----
AAAATAACATCATATTCATATTCTACACAGTTT-TCTAATCAATTTTCATATGTAACATGTTAAAATTGGATTTATGATT
TAAAAGATATGAATATTA-A-CAAAA--CATTTGAA--TCTATA--TAAAAATGTTAT-TTTCTAAACGGATAGCAGGTT
TATTAACCAAAATCTCAGGGAGTTTTCT---------TCA-AAAA-GTGAAAGGTTTTCTA-TTCTCACTTAAAATAGGA
CCGCGAGTTGATTAATTGAAACCTAAGGGGGTTT-
>chr7B_1
TAAGTGATAAATTCATTGGCTATATCTTGAGGTCCAAAAAGATCTCTCCCTGGACTATCCATAATGGAGACAATCCTATT
TCTTCTCCTCCTCTTGGTGACTGCCTGATGGAAAAAAGTTGTGTTCCTGCCACCTTGTGTGACCGAAT--------GCTT
TTTGGCTCTTTGCTTATAGAATTCGTTTAACTTTGTCATGCTTCCTTCATATTGGGCTACCGGGTTCGCTTCAAGAGCGT
AGTCCTGTTGATCTAGAGGCTGCATCCGAATATCATTAATTTGATTCTGCATCTGATCAAGTTGCTGCTGAAGTGGCCTT
TGACTTTTTGCACCACACTTTGAGAGTACCTACAAGATGGTTAGTGCGTACATGGAAAGGTTTTGTGGTAGTAGAAGCCC
AATCATTCTTTGCAACAGATTGATAATCTCCCACAAAAAGCCACCAATTTTCAAATTTGAAGGTGAGCCAGGGCCTTTTA
AACTTAGACTCAGTTGAAAGTAAGATATGTGCATGATCGCTAAAACTATGAATAATGGGCATGTTGAAAACATTTGTTGT
GAGGAACAAAGCGCACCATTCAGCATTAGCAAGACAGAGATCGAGACGTTCAAAAATAGGACTAGAAGAAAATCTCATGT
TGGTCCAAGTGTAAGCAGGTCCAGAAAAGCCCAGATCGAACAAGCCACACTGGTTTACATAATTATTAAAAGCTTGCATA
CGATTGTAATTAACGTTAGCTTCATAGGATTCTCTTTTATGCATAATATTATTTAGGTGTAGCAGCTTTACTCGTTCAGA
CAGGAGCAAAGATGAGCTCGCGTGCTAGTATATCCTTCTCAGTCCTCGAGTCCCAGCATATAG-------------TATA
TTTTAACCGCACCATTTGCAAGAATGGATCAGAAGCTTGCTGGCGCGGCGCCATTGACG---------------------
------------------GACCTCTGAAGACCGGCTGGGCTCGCAGCACTGTTTCACACGGAGAGATGAAGCCCATCCCT
CTGATGACGCCGTACACGATGGGCGAGTTCGACCTGTCGCACAGGGTCGTGCTGGCGCCGCTCACGCGGCAGCGCGCCTA
CGGCGGCGTGCCGCAGCCGCACGCCGCCCTGTACTACTCCCAGCGCGCCTCCCCCGGCGGCCTCCTCATCTCCGAGGCCA
CGCGGGTTTCCCCGCCGGCCTCGCGGCAGGAGGAGCCGGAGTCGTCCTTCGGGGACGTCCCCGGGATCTGGACGCCGGAG
CAGGTCGGGGCCTGGGCGCCCGTGGTGGACGCCGTGCACGCCAAGGGCGCCGTCTTCTTCTGCCAGCTCTGGCACGTCGC
CG---------GCGATGCTGCCCGGCAAAGGGAGCAGCAGGTGAGCCCACAGATGAGCTTCGACGGCCGCCGCAAGGAGC
TGACGTCCCCGAGGAGGGTGGCGCAGGGGGAGGCTCCCCGCGTCGTCGATGGGTTCAGACGCGCCGCCCGGAACGCCGTC
GACGCCGGTACGTGCGTCCGCGTGGGCCGGAAACCGTTGCTTCAGTTAGTACAGTAGGGTTTTC-CTGCGCTCACTCCTT
CCGTGC-------------------------------------GCCATGGCAGGCTTCGACGGCGTCGAGATCCTCGGCG
CCAACGGCTACTTCGTCGACGGCGATGG------CATGGAGAACCGGTGCCGGTTCGCGCTGGATGTGGTCGACGCTGTG
GTGCGGGAGATCGGCGGCCAACGCGTGGGCGTGCGGCTGGACCAGTTCAGCGCCGAGCCCGACGAGCACGCGCTGGCGCT
CGACGTCGTGAGCCGGCTCAACGACCACGGCGTGCTCTACTGCCACATGATCGAGCCGAGGGTGGACGGACGGCGGCGCG
TGTCCCGGCGGCTGCTGCCGTTCAGGGAGGCGTTCGGCGGCACGTTCATCGCCAGCGGCGGGTACGGGCGGGAGGAGGGC
GACGCTGCCGTCGGCGAGGGGTACACCGACCTGGTGGCGTACGAGCGACTGTTCCTGGCGAACCCGGACCTGCCGAGGAG
GTTCGAGCTCGGCGCGCCGCTCAACGACTGCGTCAGCGCCACCTTCCACGGCGCCGGCGCCGCA---GCCGACCCCGCCG
TCGGGTACACCGACTACCCGTTTCTCGACTGATCGAGCTCGAATACTGCTTTCGCCATTGGCAGTTCACCAATCCGGTCG
TGTCTAACACAATAAACAATGATCCAATGGTGGCTTCAAATGTCCATTTCGGCCAGATCGAATA--TTTTATTTCAACTC
GATCGAGATCCAAGGAATTTCACT--------------------------------------------------------
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---------------------------------------------------------------ATTTTAAAAATAT----
--------------------------------------------------------------------------------
-------------------------------------------------GACAACATT----------------------
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-----------------------------------
>chr6B_3
--AGTGATAAATTCATTGGCTATATCTTGAGGGTCAAATAGATCTTGCCCTTGACTATCCATAACGAAAACAATCCTATT
TCTTCTCCTCCTCCTAGTGACTGCCTAGTGGAAAAAAGTTGTGTTCCTGTCACCTTGTGTGACCAAATGTTTCTTGGCTT
TTTGGCTCTTTGCTTATAGAATTCATTTAACTTTGTCATGCTTCCTTCATATTGGGCTACCAAATTCGCTTCAAGAGCAT
GGTCCTGTTGGTCTAGAGGCTGCATCTGAATATCATTGATTTGATTCTGCAACTGATCAAGTTGCTGCTAAAGTGGTCTT
TT-CTTTTTGCACCACACTTTAAGAGTACATGCAAGATGGTTAGTGCGTGCATGGAAAGGTTTTGTAGCTGTAGAAGCCC
AATCATTCTTTGCAACAGATTGATGATCTCCCTCAAGAATCCACCAATTTTCAAATTTGAAGGTGAGCCAAGGCCTTTTA
AATTTAGACTAAGTTGAAAGTAAGATAGGTGCATGATCGCTAAAACTATGAATAATAGGCATGTTGAAAACATTTTTCAT
GGGAAACAAATCACACCATTCATCATTAGCAAGACATCGATCGAGACGTTCAGAAATAGGATTAGAAGAAAAGCTCATAT
TGGTCCAAGTGTAAGCAGGTCCAGAAAAGCCCAGGTCGAACAAGCCACACTGCTTAACATAATTATTAAAACCTTGCATA
CGATTGTAATTAACATTAGCTCCATAAGATTCTCTTTTATGTATAATATTATTAAGGT----------------------
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-----------------------------------
>chr7D_998
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--------------------------------------------------------------GAGATGGAGCCCATCCCT
CTGCTGACGCCGTACAAGATGGGCCAGTTCGACCTGTCGCACCGGGTCGTGCTGGCGCCCATGACGCGGCAGCGCGCCTA
CGGCGGCGTGCCGCAGCCGCACGCCGCCCTCTACTACTCCCAGCGCGCCACCCCCGGCGGCCTCCTCATCTCCGAGGCCA
CGCGCGTCGCGCCGGCGAG---GCGGGACGAGGAGCCGA---CGTCGTTCAGGGACATGCCGGGGATCTGGGCGCCGGAG
CAGGTCGAGGCGTGGAGGCCCGTGGTGGACGCCGTGCACGCCGAGGGCGCCGTCTTCTTCTGCCAGCTCTGGCACGCCGC
GGCCGGCAACGGCGACGATGCCAGGGAAAG---GCAACAGGTGAGCCCGCAGATGAGCTACGATGGCCGCCGCGAGGAGC
TGACGTCGCCGAGGAGGGTGGCGCCCGAGGACGCGCCCGGCGTCGTGGACGCGTTCAGACGCGCCGCCAGGAACGCCATC
GATGCCGGTGCGTGCCTG----------GGAGACCGTTGTTCCAGTTCCTTTTTTTCCTTCCGAGTAAAGGAGCCCATCT
CCCCTGTTTCACTTCTGAAATCAGACACCAACCGTGC---CGTGCCATGGCAGGCTTCGACGGCGTCGAGCTCCAAGGCA
CCAACGGCTACTTCGTCGACGGCGGCGGCGGCGGCCCGGAGAGCCGGTGCCGGTTCGCGCTGGAGGTGGTGGAGACCGTG
GCGCGGGAGATCGGCGGCCACCGCCTGGGCCTGCGGCTGGACCAGTTCACGGCCGAGCCCGAGGAGCACGCGCTGGCGCT
CCACGTCGTGAGCCGGCTCAACGACCTCGGCGTGCTCTACTGCCACATGATCGAGCCCAAGGTGGACGGCCGGCGCCGTG
TGTCCCGGCGGCTGCTGCCGTACAGGGAGGCGTTCGGCGGCACGTTCATCGCCAGCGGCGGGTACGGGCGGGAGGAGGGC
GACGCGGCCGTCGGCGAGGGGTACGCCGACCTGGTGGCCTACGGGCGGCTCTTCCTGGCCAACCCGGACCTGCCGAGGAG
GTTCGAGCTGGGCGCGCCGCTCAATGACTGCGTCAGCGCCACCTTCTACGGCGCCGGAGTCGGATCCGCCCACCCCGCCG
TCGGATACACCGATTACCCGTTCCTCGACTGATCGATGATCGA-------------------------------------
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-----------------------------------
>chr7A_998
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--------------------------------------------------------------GAGATGGAGCCCATCCCT
CTGCTCACGCCGTACAAGATGGGCCAGTTCGAGCTGTCGCACCGGGTCGTGCTGGCGCCCATGACGCGGCAGCGCGCCTA
CGGCGGCGTGCCGCAGCCGCACGCCGCCCTCTACTACTCCCAGCGCGCCACCCCCGGCGGCCTCCTCATCTCCGAGGCCA
CGCGCGTCGCGCCGGCAAG---GCAGGACGAGGAGCCGG---CCTCGTTCAGGGACATGCCGGGGGTCTGGGCGCCGGAG
CAGGTCGAGGCGTGGAGGCCCGTGGTCGACGCCGTGCACGCCGAGGGCGCCGTCTTCTTCTGCCAGCTCTGGCACGCCGC
GGCCGCCCCCGGCGACGCCGTCAGGGAAAG---GCAGCAGGTGAGCCCGCAGATGAGCTATGATGGCCGCCGCGAGGAGC
TCACGTCGCCGAGGAGGGTGGCAGCTGAGGACGCGCCCGGCGTCGTCGACGCGTTCAGACGCGCCGCCAGGAACGCCATC
GATGCCGGTGCGCGCGTG----------GGAGACCGTCGTTTCAGTTTTCTTTTTCGAG-------------------CT
CCCCTGTTTCACTTCTGAAATCAGACACCAACCGTGC---CGTGCCATGGCAGGCTTCGACGGCGTCGAGCTCCAAGGCA
CCAACGGCTACTTCGTCGTCGACGGCGGT---GGCCCGGAGAGTCGCTGCCGGTTCGCGCTGGAGGTGGTGGACGCCGTG
GCGCGGGAGATCGGCGGCCACCGCCTGGGCCTGCGACTGGACCAGTTCACCGCAGAGCCGGACGAGCACGCGCTGGCGCT
CCATGTCGTCAGCCGGCTCAACGACCTCGGCGTGCTCTACTGCCACATGATCGAGCCCAAGGTGGACGGCCGGCGGCGCG
TGTCCCGGCGGCTGCTGCCTTACAGGGAGGCGTTCGGCGGCACGTTCATCGCCAGCGGCGGGTACGGGCGGGAGGAGGGC
GACGCGGCCGTCGGCGAGGGGTACGCCGACCTGGTGGCGTACGGGCGGCTCTTCCTGGCGAACCCGGACCTGCCGAGGAG
GTTCGAGCTCGGCGCGCCGCTCAACGACTGCGTCAGCGCCACCTTCTACGGCGCCGGCGCCGGCGCCGCCCACCCCGCCG
TCGGATACACTGATTACCCGTTCCTAGAATGATCGA--------------------------------------------
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-----------------------------------
>chr7B_1000
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----------------------------------------------------------------GATGGAGCCCATCCCT
CTGCTCACGCCCTACAAGATGGGCCAGTTCGAGCTGTCGCACCGGGTCGTGCTGGCGCCCATGACGCGGCAGCGCGCCTA
CGGCGGCGTGCCGCAGCCGCACGCCGCCCTCTACTACTCCCAGCGCGCCACCCCCGGGGGGCTCCTCATCTCCGAGGCCA
CGCGCGTCGCGCCGGCAAG---GGAGGACGAGGAGCCGA---CGTCGTTCAGGGACATGCCGGGGGTCTGGGCGGCCGAG
CAGGTCGAGGCGTGGAGGCCCGTGGTCGACGCCGTGCGCGCCGAGGGCGCCGTCATCTTCTGCCAGCTCTGGCACGCCGC
CGCCGGCGACGGCGATGCCGTCCCGCAAAG---GCAGCTGGTGAGCCCGCAGATGAGCTTCGACGGCCGCCGCGAGGAGC
TGACGTCGCCGAGGAGGGTGGCCGCCGAGGACGCGCCCGCCGTCGTCGACGCCTTCAGACGCGCCGCCAGGAACGCCATC
GATGCCGGTGCGCGCTTCAG--------------------------TTTTTTTTTCGAG-------------------CT
TCCCAGTTTCGTTTCTGAAATCAGATACCAACCGTGCACTCGTGCCATGGCAGGCTTCGACGGCGTCGAGCTCCAAGGCA
CCAACGGCTACTTCGTCGTCGACGACGGCGGCGGCCCGGAGAGCCGGTGCCGGTTCGCGCTGGAGGTGGTGGAGGCAGTG
GCGCGGGAGATCGGCGGCCACCGCCTGGGCCTGCGGCTGGACCAGTTCACCGCCGGGCCCGACGAGCACGCGCTGGCGCT
CCACGTCGTGAGCCGGCTCAACGACCTCGGCGTGCTCTACTGCCACATGATCGAGCCCAAGGTGGACGGCCGGCGGCGCG
TGTCCCGGCGGCTGCTGCCGTACAGGGAGGCGTTCCGCGGCACGTTCATCGCCAGCGGCGGGTACGGGCGGGAGGAGGGC
GACGCGGCCGTCGGCGAGGGGTACGCCGACCTGGTGGCCTACGGGCGGCTCTTCCTGGCGAACCCGGACCTGCCGAGGAG
GTTCGAGCTGGGCGCGCCGCTCAACGACTGCGTCAGCGCCACCTTCTACGGCGCCGGCGCCGGAGCCGCCCACCCCGCTG
TCGGATACACCGATTACCCCTTCCTAGAATGATCGA--------------------------------------------
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-----------------------------------
>chr2B_2399
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------------------------------------------------------------------------TTTTATAT
TGACTAGCAAAAGAGCCTGTGCGTTGCAACCGGAGAA--AAA--AAAACACCACACACCCTTAACACAATAACCATGACT
CAAGACCCCAATAGGTCTATGTCCTTT-ATTTCAACATGACATCTTATCAGTCTTGCCGTTTATTCTTCTTCCCACTCTC
GCTGACAGACATGCATGGTAATAGATGGTTTCTCTCGTCTCCAATTTGTT-TTGGTTGAGGTGTTCATTTTCAATTTGAA
TCAGCACCGGTACAGAAGAAAGATGGATCATGCACTACTGATTAATGTTGCATCCTAAACAATGTTTGAAAAATTATTAA
CATGTGAAACAGCATCATATTAAGATTCTACATATTTTTCTAATTAGTTTTCATATATAACGTGTATATATTTGAGTTAG
GGTTTAAAAAACATGAATATTT-TTT-AAAGCATTTGAATCTGTCCCTAAATAGCATTTAAAAATGGTTAACGGGT----
AAAACAACATCATATTCATATTCTACACATTTT-TCTAATCAATTTTCATATATAACATGTTAAAATTGGAGTTGATGTT
TAAAAGATATGAATATTAGA-AAAAA--CATTTGAA--TTTATA---AAGAAAGTTAT-TTTCTAGACAGACGGTGGGTT
GATTAGCCAAAATCTTGGGGGGGGGGGTGTTTCTCGAAAA-AAGA-GCAAAATGTTTTCTA-TTCTCACTTAAAATAGGA
CCACAGGTTGATTAAGTGAAACCTCATGGGGGTTT
>chr5A_2407
--------------------------------------------------------------------------------
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TTACTAGCAAAAGAGTCTATGTGTTGCAACGAGAGAG--AAA--AT---ACCACACGCCCCTAACACAATAACCATGACT
CAAGACCCCAATAGGTCCACATCCTTT-ATTTTAACATGACATATTATCAGTCTTGTCATTTATCCTTCTTCACACTCTC
GCTCACGGACATGCATGGTCATAGATGGTTTCTTTCGTATCCAATTTGTCGTT--TTGAGGTGTTCATTTTCAATTTGAA
TCG-CACCGATACGAAAGAAAGATGGGTTATGCACTACTGGTTAACGTTGCATCCTAAATAAAATTTTAAAAATTATTAT
CATGTGAATAAACATCATATTCAGATTCTACGCATTTTTCTAAGCAATTTTCACATATAACATGTTAAAATTGAAGTTAG
GGTTTAAAAGATATGAATATTTCTTT-GAAGCATTTGAATCTGTCCCTAACCAACATTTAAAAATGATCCATGGGTAAAA
ATAATAATAATATATTCATATTCAACACATTTT-TCTAATCAATTT-CATATATGACATGTTAAAATTGGAGTTACGGTT
TAAAAGATATGAATATTATT-TTAAA--CATTTGAA--TCTATA--TAAAAATGTTAT-TTTCTAGAGGGACAATGGCTT
TATTAACCAAAATGTCAGGGGGTTTTCT---------GAA-TAAA-TCAAAAATCTTTCTA-TTCCCATTTAAAATAGGA
TTGCGGGTTGATTAGCCGAAATCTCAGGGGGTTT-
>chr5A_2407
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TTATTAGCAAAAGAGCTCATGCGTTGCAACGGAAGA-AAAAA--AT---ACCACACGCCCATAACACAATAACCATGACT
CAAGACCCCAATAGGTCCATGTCCTTT-ATTTCAACATGGCATCTTATCACTCTTGTCTTTTATCCTTCTTCCCACTCTC
ACTGACGGACATGCATGGTCATAGATGGTATCTTTCGTCTCCAAATT-TT-TTTGTTGAGGTGTTCATTTTCAATTTGAA
TCGGCACCCGTAGGAAAGAAAGATGGGCCGTGCACTACTGATTAATGTTGCATCCTGAGCAACATTTTAAAAATTATTAA
CAAGTGAAACAACATCATATTCAGATTCTATGCATTTTTCTAATCAATTTTCATATATAATATGTTAAAATTGAAGTTAG
GGTTTAAAAGCTGTGAATATTT-TTTTGAAGCATTTGAATCTGGCCCTAAACAACATTTTAAAATGATTAAC-GAGT--A
AACATAACATCGTATTCATATTCTACACATTTT-TCTAATCAATTTTCATATATAACATGTTAAAATTGAAGTTACGGTT
TAAAAGATATGAATATTT-A-AAAAA--CATTTGAA--TCTATATATAAAAACGTTAT-TTTCTAGACAGACAACATGTT
TATTAACCGAAATCTCAGGGGGTTTTCT---------GCA-GAAA-GCAAAAAAAAT--TG-TTCTCACTTAAAATAGG-
-----------------------------------
>chr5D_2407
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TTACTAGTAAAAGAGCTCGTGCGTTGCAATGGAAGAG--AAA--AT---ACCACACGCCCCTAACACAATAACCATGACT
CAAGACCCCAATAGGTCCACATCCTTTTATTTTAATATTTCGTATGACCAATCTTGCCATTTATCCTTCTTCACACTCTC
GCTCACGGACATGCATGGTCGTAGATGGTTTCTTTCGTCTCTAATTTGTC-TT--TTGAGGTGTTCACTTTCAATTTGAA
TCGGCACCAATACGAAAGAAAGATGGGGTATGCACTACTGAATAACGTTGCAACTTAAATAAAATTTTAAAAAATATTAA
CATGTGAATAAACATCATATTCAGATTCTACACATTTTTCTAAGCAATTTTCATATATAACATGTTAAAATTGAAGTTAG
GGTTTAAAAGATATGAATATTTCTTT-GAAGCATTTGAATTTGTCCCTAAACAACATTTAAAGATGATTCATGGAT----
AAAAAAATATTATATTCATATTCTACACATTTT-TCTAATCAATTTTTTTATATGACATGTTAAAACTGGAGTTACAGTT
TAAAAGATATGAATATTTTT-TTAAA--CATTTGAA--TCTATA--TAAAAACGTTAT-TTTCTAGACGGACAGTGGCTT
TATTAACCAGAATGTCAGGGGGTTTTCT---------AAA-TAAA-TCGAAAAGCTTTCTG-TTCCCACTTAAAATAGGA
CTGTGGGTTGATTAGCTGAAACCTCAGGGGGTTT-
>chr3D_2407
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TTACTAGCAAAAGAGCCCGTGCATTGCAACGGAAGAAAAAAA--AT---ACCACACGCCCCTAACACAATAACCATGACT
CAAGACCCCAATAAGCCCACGTCCTTT-ATTTCAACATGGCATCTTATCAGTCTTGCTGTTCATCCTTCTTCCCACTCCC
GCCGACAGATATGCCTGGTTATAGATGATTTCTTTGTCTTC--AAAT-TT-TTTGTTGAGGTGTTCATTTTTAATTTGAA
GCAGCACCGGTACAAAAGAAAGACCGATCATGCACTACTGATTAATGTTGCATCCTAAACAATATTCTTAAAATTATTAA
CATGTGAAACAACATCATATTTAGATTCTACA----TTTTTAATCAATTTTCATATATAACATGTTAAAATTGGAGTTAG
GGTTTAAAATATATGAATATTTATA---AAGCATTTTAATTTGTCCCTACATATCAGTTAAAA-TGGTTAAT-GGGT-AA
AAAATAACATCATATTCATATTCTACACATTTT--CTAATCGATTTTCATATATAACATGTTAAAATTGAAGTTACTGTT
TAAAAGATATGAATATTTTAGAAAAA--CATTTGAA--TCTATA---AAAAACGTTAT-TTTCTGGACGGATGGCAGGTT
AATTAATTCAAATCTCAGGGGGGTTTCT---------GCACAAAA-GCTAAACATTTTCTA-TTCTCACTTAAAATAGGA
CCGCATGTTGATTAACTGAAACCTCTAGGGGGTTT
>chr4D_2408
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-TACTAGCAAAAGAGCGCCTGTGTTGCAATGGGAG-AGAAAA--AT---ACCACACGCCCCTAACACAATAACCATGACT
CAAGACCCCAATTGGTCCACGTCCTTT-ATTTCAACATGGCATCTTATCAGTCTTGCCGTTTAT-CTTCTTCCCACTCAC
ACCGACGGACATGCATGGTTATAGATGGTTTGTTTCGTCTTCAATTTATC-TTTGTTAAGGCGTTCATTTTCAATTTGAA
TCGGCACCGGTACAAAAGAAAGACGAGTCATGCACTACTGATTAACGTTGCATCCTAAATAACATTTTTAAAATTATTAA
CATGTGAA-CAACATCGTATTCAGATTCTACATATTTTTCTAATCAATTTTTATATATAACATGTTAAAATTGGAGTTAG
GGTTTAAAAGATACGGATATTTTT--TAAAGCATCTGAATCTATCTCTAAACATCATTTAAAAATGGTTAAC-GGGT--A
AAAATAACATCATATTCATATTCTACAAATTTT-TCTAATTGATTTTCATATATAATATGTTAAAGTTGGAGTTATGGTT
TAAAAGATATGAATATTT-A-AAAAAA-CATTTGA----ATATA--TAAAAACGTTAT-TTTCTAGACGAACAACAGGTT
AATTAACCCAAATCTCAGGGGGTTTTCG---------GCA-AAAAAGCGAAATATTTTCTA-TTCACACTTAAAACAGGA
CCCCGAGTTGATTAACCAAAACCTCAGG-------
>chr4A_2408
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-TACTAGCAAAAGAGTCTGTGTGTTGCAATGGGAG-AAAAAA--AT---ACCACACGCCCCGAACACAATAACCATGACT
CAATACCCCGATAGGCCCACGTGCTTT-ATTTCAACATGACATTTTATCAGTCTTGTCATTTATCCTTCTTCCCACTCTC
GCCGACGGACATGCATGGTTATAGATGGTTTCTTTCGTCTCCAATTTGTT-TTTGTTGAGGTGTTCATTTTCAATTTGGA
TTGACACCGGTACAAAAGAAAGACAGGCCGTGCACTACTGATTAATGTTGCACCCTAAACAACATTTTAAAAATTATTAA
CATGTGAAACAACATCATATTTAAATTCTACACATTTTTCTAATAAATTTTCATATATAACATGTTAAAATTGGAGTTAG
GGTTTAAAAGCTATGAATATTTTTTTAA---CATTTGAATCTGTCTCTAAACATCATTTAAAAATGGTTAAC-GGGT--A
AAAATAACATCATATTCATATTCTACACATTTTATCTAATCAATTTTCATATATAATATGTTAAAGTTGGAGTTACGATT
TAAAAGATATGAATATTTTTAAAAAA--CATTTGAA--TATATA---AAAAATATTAT-TTTCTAGACGAACAACGGGTT
AATTAACCAAAATCTCAGGGGGTTTTCG---------ACA-AAAA-GCTAAACATTTTC-A-TTCTCGCTTAAAATAGTA
CCCGGAGTTGATTAACCGAAACCTTAGGAGCTTT-
>chr5D_2408
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-TACTAGCAAAAAAGCCCGTGCGTTGCAACGGG-GAAAAAAA--AT---ACCGCACTCTCCTAACACAATAACCATGACT
CAAGACCCCAATAGGTCCACGTCCTTC-ATTTCAACATAGCATCTCATCAGTCTTGCCATTTATCCTTCTTCCCACTCTT
GTTGACGGACATGCATAGTCATAGATGGTTTCGTTCGTCTCCAATTTGTT-TTTGCTGAGTTGTTCCTTTTCTATTTGAA
TCGGCACCGGTACGAAAGAAAGATGAGTCATGCACTACTGATTAATGTTGCATCCTAAACAACATTTAAAAAATTATTAA
CATGTGAAATAACATCATATTCAGATTGTACGCA----TTTAATCAATTTTCATATATAACATTTTAAAATTGGAGTTAG
GGTTTAAAAGAAATGAATATTTTT--TGAAGCATTTGAATCTGTCCCTAAGCATCATTTAAAAATAATTAAC-GGGT--A
ACAATAACATCATATTCATATTCTACATATTTC--CTAATCAATTTTCATATATAAGATGTTAAAATTGGAGTTACGG-T
TAAAAGATGTGAATAT---TAAACAA--CATTTGAA--TCTATA---TAAAAAGAGTTATTTCTAGACGAACAGCAGGTT
TATTAACCAAAATCTGAAGGGTT--TTTCCGC---------ACAAAGAAAAATGTTTTCTA-TTCTCACTTAAAATA--A
CCATGGTTTGATTAATCGAAACCTCAAGGGGTTTT
>chr5D_2408
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-TACTAGCAAAAGAGCCCGTGCGTTACAACGGGAG-AAAAAA--AT---ATCACACGTCCCAAACGCAATAACCATGACT
CAAAACCCCAATAGGTCCACGTCCTTT-ATTTTAACATGGCATCTTATCAGTCTTGCCGGTTATCCTTCTTCCCACTCTC
ACCGACGGACATGCATGGTCATAGATGGTTTCTTTCATCTCCAATTTATT-TTTGTTGGGGTGTTCATTTTCAATTTGAA
TCGGCACTGGTACGAAAGAAAGACGGGTCGTGCACTATTGATTAACATTGCATCCTAAGCAACATTTTAAAAATTATTAA
TATGTGAAACAACATCATATTCGGATTCGACACATTTTTCTAATCAATTTTCATATATAACATGTTAAAATTGAAGTTAG
GGTTTAAAATATATGAATATTTTT--TGAAGCTTTTGAATGTGTCCCTAAACAGCATTTGAAAATGATTAAC-GGT----
GAAATAACATCATATGCATATTCTACGCATTTT-T-TAATCAATTTTCATGTATAACATGTTAAAATTGGAGTTATTTTT
TAAAAGATATCAATATTT-A-GAAAAA-CATTTGAGTCTATATA--TAAAAAAGTTAT-TTACTAGACGGACAGCGTGTT
TATTAACCAAAATCTCAGGGGGGGATTTCTGC---------ACAAAATAAAATGTTTTCTA-TTCTCACTT---------
-----------------------------------
>chr3A_2439
G-------------------------------------------------------------------------------
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---------------------------------AGAGAAAAA--AT---ACCACACGCCGCTAACACAATAACCATGACT
CAAGACCCCAATAGGTCCATGTCCTTT-ATTTCAACATGGCATCTTATCAGTCTTGCCGTTTATCCTT-T--CCACTCTT
GCCGACAGACAAGCATGGTCATAGATGATTTCTTTCATCTCCAATTTGTT-TTTGTTGAGGTGTTCATTTTCCATTTGAA
TCGGCACCGGTACGAAAGAAAGACGGGTCATGCACTACTAATTAACGTTGCATCCTGAACAACATTA-TAAAATTATTAA
TAGGTGAAACAACATCATATTCAGATTCTATGAATTTTTCTAATCAATTTTCATATATAACATGTTAAAATTGGAGTTAG
GGTTTAAAAGATATGAATATTTTTATTGAAGCACTTGAATCAATACCTAGACAACATTTAAAA-CGATTAAC-GGGT--A
AATTTAACATCATATTCATATTCTACACATTTT-TCTAATCAATTTTCATATATAACATGTTAAAATTGGAGTTATGGTT
TAAAATATATGAATATTTTT-CTAAAAGCATTTGAATTTATATA---AAAAATGTTAT-TTTCTAGACGGACAGCAGGTT
TATTAACCAAAATCTTAGGGGGATTTCT---------GCA-AAAAAGTGACACATTTTCTATTTCTCATTTAAAATAGGA
CTGTAAGTTGATTAACCGAAACCAAGGGGG-----
>SNPs
--------------------------------------------------------------------------------
----------------S---------------------------------------------------------------
-----------------------------------------------------------------------------S--
----S----------------------------S-----------------------S-------------------S--
-----------------S-----------S--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------S---------S---------------------------------------
-------------------------------------SSS----------------------------------------
---S------------------------------------------------------------S-----------S---
----------------------------SSSSSSSS--SSSS-S--SSSS-S-S--S----SSSSSSSSSSSSSSS----
-----------------------------------------SS-SS-SS-S--SSSSS-SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS----S-------S----S---------S----------------------------------
--------------------------------------------------------S-----------------------
-------------------------------------------------------------S------------------
-----------------S----------------------------S------S--------------------------
----------------------------------S---------------------------------------------
----------------------------S----------------S--S-------------------------------
--------------------------------------------------------------------------------
----------------S------------------------------------------S---SS---------------
S-S----------------------------------------S-----S------------------------------
-------------S---------------SSS-S----------S--------------------------S--------
--------------------S-----------------------------------------------------------
------S-------------------------------------------------------------------------
---------S------------------------------------------------------------S---------
--------------------S-----------------------------------------------------------
---------------S----------------------------------------------------------------
------------------------------------------------------S-------------------------
-S---S-----------S------S------------------------------SSSSSS-S-SS--------S-----
------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------SS
----------S----------------S--SS----------SS------------------------------------
-------SS-----------------------------------------S-------S-------S-------------
---------S-------------S-----------S---------------------S-S--------------------
------S-------------------------------------------------------------S----------S
-----------S---------------S-S-----S----------------------S---------------------
------------------------------------------------------S------------S----S-------
-----------------------------S----------------------S------------------S--------
-----------------------------------------------------------------S--------------
--------------------S----------------S--------------S---------------------------
-----------------------------------
>forward_996
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----------------CTGACCACTGAAGATCGGCA--------------------------------------------
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-----------------------------------
>reverse_2727
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------TCGGTACGAAAGAAAGACGGG-----------------------------------------------------
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-----------------------------------
