>input_sequence_60150
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-----------------------------------------------------------CGCCAAATTTGGGCTCCGCGC
CCCCGCGAACCCCTCGCCGCCGCTCGCGCGCCTCCGGTACTAAGGGCACGCGCGCAATGGCGCGTCCGCCCGTGCTGCAG
CTCCCCGTCGTCCCCCTCTCGCCCACCCTCTCCTTCGCTCGCGATGGGGTCCGCGGCGTCGACCGACAGGGCCGAGCGGC
GGAGGCGGGACCGGGCGCCGGGGCACAGCGGGGCCTCCGATCCCCCGGCGGCGCCTCCGCAGGATCCTTCGGCGTCGGCG
TCGGCATCGGAGGTGGATGTGAGCAGAAAGGGGTGTAAGGTGGCGCCAGAGCCCAAGGATGGGGAAGAGACGGCGCCGCT
GCCGGGCTCTCCCAGCTTCCGGATCTACTGCCAGAAGGCGGCCCGGGTCGACGCTCTGGTGGCAGAGGAAGCCGATGAAA
ACGCGGACGACGACGGG---------------------------------------TTTGCCAGTGCCGA---GGGTAAT
TTGTTCCCCTTCCCCTTCTCCTGTCACTGTTCCTTGCTTGTTCTGCATCACACAAGTTTCATTCAGGCGCATTGCGCTGA
CACCTTGAATCGCCCTATTCCTTGCAGACACTACTATGGCGGTCAGGAAGGACGATCCTCCACACTGCTCCGGCGACGCC
CTACTCCTTGCAGACACTACTCTGGCGGTCAGGAAGAACGATCCTCCACACTGCTCCGGCGACGCCCTACTCCTTGCAGA
CACTACTCTGGCGGTCAGGAAGAACGATCCTCCACAATGCTCCGGCGAGGTAGGCATCACAGCAAATTCAGCATTTGCAA
ATGCACCAATGGCTTACTCTTCTACTCTGAATCCCGCTGATACGCACCGCAGTTGCCCAAATGTAAGGATGGGTGGCTGA
AGTTCAGAGGCCAGACGGTCGTCGGCGCGCTGCACAGCTTTATCGTCTGTCACAGCAAGAGAACTTCAGCTCCTCCTCCT
CCTCATCCTCCTGCTGCGAAACCTCCCCACCGTCCCGGTGCTGCTTCACAAT---CTGTTGCTGCAGAGCCCTATCTCTG
ACCAGGCAGTGCATGTGTGCTTCACGTTTTATGTGTCATCATGTAAAATGTGGATGATTCAGTCACCTCCTATGATGCTT
TGCGGCGTTAATTTTCTGTACTT---------------------------------------------------------
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>chr3A_1_TraesCS3A01G439100
TGTGCTGCTAATATACTGCTGTTGTGCACTTGTGCTCCTCTTTTACTTATGCCAATATACTATTGTTGTGCACTTGTGCT
TCTCTTTTACTGTTGTTTTGTTGTTGTTGGTATCCATGGAGATCCCCATGGGGATCGGGTACCCGTTGTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTAGCGGGGATCGGGGCGGGGACGGTGGCATGCC
CCCCGGTGATCCCTGTCTCCGTTGCCATTTTGAACTCTCGCACATGCCTGATACATGAATACCTTTGTCTCATCCAGATC
CGGCCAACCATCATAGTTAGCCAACAACACCGGTAGCC--GCGGAATAACCACGGACCATCTCGCATCACACGCCCCCAG
CCTACCAAGCAATTTAGTTTCACCGAGAACTAATTATCTTTGGTTGCCCTAAATTCCACCTATACCACACCATGGTTGTT
TGCATGCTTGATCGTACATGGGAATAAACAAAGGATTCTCTCCATGTTGTTGGAAACGAATGAATCCTAAG-AAAAAAAT
CCTATGAATCGAAAGAGCACATGTACAAAATAATCTAAAGATTAGATCCAAATTTCCTTTAGAATTTTTTTTCTCGAGAC
TATTAGAAATA---TTTTTAATCAAAGAGGCCTGCT----TACCACTAACAGCCCATCTTCACTAAAGGCTCTTTATAGG
CGGGCTGTGATTCTTACCGCAGCCCAGAAACGCGAACGGTAAACTGGCCCAGCAAAGCACATCCGCAGCCGTCTTCCCGC
CAGGCCGG---------ACCCACCTGTCATCAGCCACCTCACCCGATCACCCCCTTCCCCGCCAAATTTGGGCTCCGCGC
CCCCGCGAACCCCTCGCCGCCGCTCGCGCGCCTCCGGTACTAAGGGCACGCGCGCAATGGCGCGTCCGCCCGTGCTGCAG
CTCCCCGTCGTCCCCCTCTCGCCCACCCTCTCCTTCGCTCGCGATGGGGTCCGCGGCGTCGACCGACAGGGCCGAGCGGC
GGAGGCGGGACCGGGCGCCGGGGCACAGCGGGGCCTCCGATCCCCCGGCGGCGCCTCCGCAGGATCCTTCGGCGTCGGCG
TCGGCATCGGAGGTGGATGTGAGCAGAAAGGGGTGTAAGGTGGCGCCAGAGCCCAAGGATGGGGAAGAGACGGCGCCGCT
GCCGGGCTCTCCCAGCTTCCGGATCTACTGCCAGAAGGCGGCCCGGGTCGACGCTCTGGTGGCAGAGGAAGCCGATGAAA
ACGCGGACGACGACGGG---------------------------------------TTTGCCAGTGCCGA---GGGTAAT
TTGTTCCCCTTCCCCTTCTCCTGTCACTGTTCCTTGCTTGTTCTGCATCACACAAGTTTCATTCAGGCGCATTGCGCTGA
CACCTTGAATCGCCCTATTCCTTGCAGACACTACTATGGCGGTCAGGAAGGACGATCCTCCACACTGCTCCGGCGACGCC
CTACTCCTTGCAGACACTACTCTGGCGGTCAGGAAGAACGATCCTCCACACTGCTCCGGCGACGCCCTACTCCTTGCAGA
CACTACTCTGGCGGTCAGGAAGAACGATCCTCCACAATGCTCCGGCGAGGTAGGCATCACAGCAAATTCAGCATTTGCAA
ATGCACCAATGGCTTACTCTTCTACTCTGAATCCCGCTGATACGCACCGCAGTTGCCCAAATGTAAGGATGGGTGGCTGA
AGTTCAGAGGCCAGACGGTCGTCGGCGCGCTGCACAGCTTTATCGTCTGTCACAGCAAGAGAACTTCAGCTCCTCCTCCT
CCTCATCCTCCTGCTGCGAAACCTCCCCACCGTCCCGGTGCTGCTTCACAAT---CTGTTGCTGCAGAGCCCTATCTCTG
ACCAGGCAGTGCATGTGTGCTTCACGTTTTATGTGTCATCATGTAAAATGTGGATGATTCAGTCACCTCCTATGATGCTT
TGCGGCGTTAATTTTCTGTACTTAATCCTGGTTGTTGTTTGTGAGCTAACCCTGCATATGAGCAACTGGTTTCGAGGAGC
GCCAGTATGTGAGTGCTCCTTTTGTTCATTAGAGAAGGATTACTGGTTAGTGTTGCAGAAAAATGGATAAGCATACTAGT
TTGG-AAACTGTTCATGCAAGCCTTCTCTTCTGGGAATTTTTCTCTGTTCTTGAAATGCTAGAGGGTCGGAAGCAAGCAT
TTCCCAAGATTAAGACCATTTCCAGTTATCTGCAGTGTCTGATATTATATCAT---------------------------
---------------------------CTGAATCCATGTCACTGGTGAAATCTCATATGTACATAGAATCGTTGTTCACA
ACTCTACTTTATTATGCTCTCTAACTATACAAGTATAGCCTATCAGTCGTGTATTAAGATGAACAGCTACTACCCCACAA
AAAAAAAGCTACTGGGACAATGGGATGTAAGAAAAGAAGAAG-----AAAAAA-AGATTAGAAAAGAGGGACATAATTAG
CTTGTCATTTGACTGCACCTACTGGGAATTTTCCTTTGGCTCTAAGCTGATCCCTATTCTTTCTTCTCACCTCCATCGGA
TGGCCAAGCGAGTACGGCCGGAATGCACCTATTAGAACCGTGGAAGGCGCCATCGTGAGGCTTGGCTTCGCTTTGTGCAT
TCCCTTCTTTGGGCTGTTCAGGTAAGATTTCACGTGACCAAATAGTAGGCTCGGCATTTTCTTTAGCTCCACAACCGATG
ATGAGAAGAACTCGTTGGTTGTTACATCGGCCAAGGTATCTATGCTATGACCAATTGATGCATCCAGATGCGGCGGAGGA
AATCTCTCGAGTTTGGTTGTGCTTGTACTTGTCACCAGTCTTGGTATCTATAGAACAATATGTACATTTTCCTTTTAGTC
ATAGCTCTATTATATGTCTAAATAGAGCGTTGAT-AAAAGCGTCAATAGAAGAGGACACAAGAAGTAGAAATGCAATTAT
TTTGTC--AGGCATAGTGGTAATTTCCGCATGATACAGTTGGGACAA
>chr3D_491
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----------TCATAGTTAGCCAACAAACACCGGGCAGTTGCGGAATAACCACGGACCATCTCGCATCACACGCTTCCAG
TCAGCCAAGCAATTTAGTTGCACCAAGAATTAATTATCTTTGGTTGCCCTAAATTCCACCTATACCACACCATGATTGTT
TGCATGCTTGATCGTACACAGGAATACACAAAGAATTCTCTCCATGAGGTTGGAAACACACGAATCCTAAGAAAAAAAAT
CCTATGAATCAAAAGAGCACATGTGCGAAATAATCTAAAGATTAGATCCAAATTTCCTTTAGAATTT-TTTTCTCGAGAC
TATTAGAAATAGAATTTTCAATCAAAGAGGCCTGCTTACCTACCACTAACGGCCCATCTTCACTAAAGGCTCTT-ATAA-
--------GATTGTTACCGCAGCCCAGAAACTCGAAGGTTAAAATGG-CCAGCAAAGCCCATCCGCAGCCGTCTTCCCGC
CAGGCGGG---------ACCCAGCTGTCATCAGCCACCTCG---------CCCCTTCCCCGCCAAATTTGGGCTCCGCAC
CCCCGCGAACCCCTCGCCGCCGCTCGCGCGCCTCCGGTACTAAGGGCACGCGCGCAATGGCGCGTCCGCCCGTGCTGCAG
CTCCCCGTCGCCCCCCTCTCGCCCACCCTCCCCTTCGCTCGCGATGGGGTCCGCGGCGTCGACCGACAGGGCCGAGCGGC
GGAGGCGGGACCGGGCGCCGGGGCACAGCGGGGCCCCCGATCCCCCGGCGGCGCCTCCGCAGGATCCTTCGGTGCCTGCC
TCGGCATCGGAGGCGGATGTGAGCAGAAACGGGTGTAAGGTGGCGCCAGAGCCCAACGACGGGGAAGAGACGGCGCCGCT
GCCGGGATCCCCCAGCTTCCGGATCTACTGCCAGAAGGCGGCCCAAGTCGACGCTCTGGTGGCCGAGGCCGACGATGAAA
ACGCGGACGGCGACC------------------------------ACGGCGACGAATTCGCCAGTGCTACTACGGGTAAT
TTGTTCCCCTTCCCCGTCTCCTGTCACTGTTGCTTGCTTGCTCTGCATCACACAAGTCTCATTCAGGCGCATTGCGCTGA
CACTTTGAATCGT-----------------------------------------------------------------CC
ATATTCCTTGCAGACACGACTCTGGCGGTCATGAAGA-------------------------------------------
-----------------------ACGATCCTCCACAATGCTCCGGCGAGGTAGGCATCACAGCCAACTCAGCATTTGCAA
ATGCACCAATGGCTTACTCTGCTACTCTGAATCCCGCTGATACGCAACGCAGTTGCCCAAATGTAAGGAGGGGTGGCTGA
AGGTCAGAGGCCAGACGGCCGTCGGCGCGCTGTACAGCTTTATCGCCTGTCACAGCAAGAGAAATTCAGCTCCTCCTC--
-CTCATCCTCCTGCTGCAAAAACTCCCCGCCGTCCCGGTGCCGCTCCACCAGCTGCTGTTGCTGCAGAGCCCTATCTCTG
ACCAGACAATGCTTGCGTTCTTCACAGTTTATGTGTCAGCATGTAAAATGTGGATGATTCAGTCACCTCCGATGACGCTT
TGCGGCGTTAATTTTCTGTACTTAATCTTGGTTGTTGTTTGTGAGCTAACCCTGCATATGAGCAACTGGTCTCGCGGAGC
GCCAGTATGCGAGTGCTCCTTTTGTTCATTAGAGAAGGATTACTGGTTAGTGTTGCAGAAAAATGGATAAGCATACTGGT
TTGG-AAACTGTTCATGCAAGCCTTCTCTTCTGAAAATCTTTATCTGTTCTTG-AATGCTAGAGGGTCGGAAGCAAGCAT
TTCCCAAGATTAAGACCATTTCCAGTTATCTGCATTGTCCATTTTTCACCTTTTCCTCTAATTTGCATATATTGTGAGAA
GTCACCTACACAATTTGCATATATGGCCTGAATCCGTTTCACTGGTGAAATCTCATATGTACATAGAATCGTTGTTCACA
ACTCTACTTTATTATGCTCTCTAACTATACAAGTATAGCCTATCTATCGTGTATTAAGATGAACAGC-------------
---------TACTGTGACCAGGGGATGTAAGAAAAGGAGAAG-----AAAAAAAAGATTAGAAAAGAGGGGCATAATTAG
CTTGTCATTTGACTAAACCTACTGGAATTTTTCCTTTGGCTCTGAGCTGATCCCTATTCTTTCTTCTCACCTCCATCGGA
TGGCCAAGCGAGTAGGGCCGGAATGCACCTATGAGAACCGTGGAAGGCGCCATTGTGAGGCTTGGCTTCGCTTTGTGCAT
TCCCTTCTTCGGGCTGTTCAGATAAGATTTCACGTGACCAAATAGTAGGCTCGGCATTTTCTTTAGTTCCACAACCGATG
ATGAGAAGAACTCGTTGGTTGTTACATCGGCCGAGGAATCTATGCTATGACCAATTGATGCATCCAGATGCGGCGGAGGA
AATCTCTCGAGTTTGGTTGTGCTTGTACTTGTCACCAGTCTTGGTATCTAGAGAACAATAAATACATTTGCCTTTTAGTC
ATAGATTTATCATATGTCTAAATAGACCTTTGATAAAAAGCGTCAATTGAAGAAGACACAAGAAGTA-------------
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>chr3B_810
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---------------TTTGAATCAAAGAGGCCTGCT----TACCACTAACGGCCCATCTTCACTAAAGGCTCTT-ATAGG
CGGTCTGTGATTCTTACCGCGACCCAGAAACGCGAAGGGTAAAATGGCCCAGCAAAGCCCACCCGCAGCCGTCTTCCCGC
CAGGCGGGAGCCGCGGGACCCACCTGTCATCAGCCACG--------TCACCCCCTTCCCCGCCAAATTTGGGCTCCGCAC
CCCCGCGAACCCCTCGCCGCCGCTCGCGCGCCTCCGGTACTAAGGACACGCGCGCAATGGCGCCTCCGTCCGTGCTGCAG
CTCCCCGTCGTCCCCCTCTCGCTCACCCTCCCCTTCGCTCGCGATGGGGTCCGCGGCGTCGACCGACAGGGCCGAGCGGC
GGAGGCGGGACCGGGCGCCGGGGCACAGCGGGGCCCCCGACCCCCTGGCGGCGCTTCCCCAGGATCCTTCGGTGCGAGCG
TCGGCATCGGAGGCGGATGTGAGCAGAAACGGGCGTAAGGTGGCGCCAGAGCCCAAGGATGAGGAAGACACGGAGCCGCT
GCCGGGATCTCCCAGCTTCCGGATCTACTGCCAGAAGGCGGCCCGGGTCGACGCTCTGGTGGCCGAGGCCGCCGATGAAA
ACGCGGACGGCGACCTCGGCGCCGATGAAAACGCGGATGGAGACCACGGCGACGAATTCGCCAGTGCTACCACGTGTAAT
TTGTTCTCCTTCCCCTTCTCCTGTCATTGTTGCTTGCTTGCTCTGCATCACACAAGTTTCATTCAGGTGCATTCAGCTGA
CACTTTGAA-----------------------------------------------------------------------
----TCCTTGCAGATACGACTCTGGCGGTCAGGAAGA-------------------------------------------
-----------------------ACGACCCTCCACAATGCTCCGGCGAGGTAGGCATCTCAGCAAACTCAGCATTAGCAA
ATGCACCAATGGCTTACTCTGCTACTCTGAATCCCTCTGACACGCAACGCAGTTGCCCAAATGCAAGGATGGGTGGCTGA
AGGTCAGAGGCCAGACGGTCGTCGGCGCGCTGCACAGCTTTATCGTCTGTCACAGCAAGAGAATTTCAGCTCCTCCTCCT
CCTCATCCTCCTGCTGCGAAAACTCCCCGCCGTCCCGGTGCCGCTCCACCAGCTGCTGTTGCTGCAGAGCCCTATCTCTG
A--AGACAATGCTTGCGTTCTTCACAGTTTATGTGT----------AATGTGGATGATTCAGTCACCTCCGATGATGCTT
TGCGACGTTAATTTTATGTACTTAATCTTGGTTGTTGTTTGTGAGCTAACCCTGCATATGAGCAACTGGTTTCGTGGAGC
CTCAGTGTGTGAGTGCTCCTTTTGTTCATTAGAGAAGGATTACTGGTTAGTGTTGCAGAAAAATGGATATGCATACTAGT
TTGGAAAACTGTTCATGCAAGCCTCCTCTTCTGGGAATTTTTATCAGTTCTTG-AATGCTAGAGGGTCGGAAGCAAGCAT
TTCCCAAGATTAAGACCATTTCCAGTTATCTGCACTGC------------------------------------------
--------------------------------------TCACTGGTGAAATCTCATATGTACATAGAATCATTGTTCGCA
ACTCTACTTTATTATGCTCTCTAACTATACAAGTATAGCCTATCAATCGTGTACTAAGACGAACAGC-------------
---------TACTGTGACCAGGGGATGTAAGAAAAGAAGAAGAAGAAAAAAAAAAGATTAGAAAAGAGGGACATAATTAG
CTTGTCATTTGACTAAACCTACTGGGAATTTTCCTTTGGCTCTGAGCTGATCCCTATTCTTTCTTCTCACCTCCATCGGA
TGGCCAAGCGAGTACAGCCGGAATGCACCTATGAGAACCGTGGAAGGCGCCATCGTGAGGCTTGGCTTCGCTTTGTGCAT
TCCCTTCTTCGGGCTGTTCAGGTAAGATTTCACATGACCAAATAGTAGGCTCGGCATTTTCTTTAGCTCCACAACCGATG
ATGAGAAGAACTCGTTGGTTGTTACATCGGCTGAGGAATCTATGCTATGACCAATTGATGCATCCAGATGCGGCGGAGGA
AATCTCTCGAGTTTGGTCGTGCTTGTACTTGTCACCAGTCTTGGTATCTAGAGAACAATAAAAACATTTGCCTTTTAGTC
ATAGACCTATCATATGTCTAAATAGACCTTTGATAAAAAGCGTCAATTGAAGAGGAAACAAGAAGTAGGAATGCAATTTT
TTCTGTCTAGGCATAGTGGTAACTTCCAAACGATACAGTTGAGACAA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS-----------------SSS-S-SSSSS------------------------------------SS----
S-SS---------------S----S----S--------------------------------------------S-----
------------------SS------S------S------------SS---------SS-S-------------------
----------S-------------S-S----------------------------------------S------------
------------------S-------------------------------S-----------------------S-----
---S--------------------------------S------S--------------S---------------------
-----S----------------------------------SSSSSS--------------------------------S-
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------------------------------S-------------------------------------------------
-----------------------------------S------------------------------------S-S-S---
-------------S---------------S--------------------------------------------------
------S--------------------------------------------------------S----SS----------
---------S----SSS-----------------------------------------S--------SSS----------
-------------------------------S--------S---------------------------------------
---S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
S--S-------------S-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------S-------------
--------------------S-------------------------S---------------------------------
--S------------------------------------------------------------S----------------
---------------------S------S------------S---S---S-S----------------------------
-----S--S---S--S--S------SS-----------S-------------------------------S---------
---------------------------S----------------------------------------------S-----
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------------------------------------------S----------S--------------------------
----------------------------------S----SSS-S--SSSSSS----------------------------
-----------------------------------S-S------------------------------------------
---------------------------------------------S---------------------SSSSSSSSSSSSS
SSSSSSSSS-----S---S-S-----------------------------------------------------------
--------------SS---------------------------S------------------------------------
--------------------------------S-----------------------------------------------
---------S----------------------------------------------------------------------
--------------------------------S---S-------------------------------------------
--------------------------------------------------S---------SS-------S----------
----S-----S---------------S-S------------------S--------------------S---------S-
--SSSS----------------S----SS-S----------S-----
>forward_38
------------------CTGTTGTGCACTTGTGCTCC------------------------------------------
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>reverse_1984
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---------------------------------------------------------------CTTCAGCTCCTCCTCCT
CCT-----------------------------------------------------------------------------
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>forward_449
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-----------------------------TTGAACTCTCGCACATGCCT-------------------------------
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>reverse_2235
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--------------------------------------------------------------------------AGGAGC
GCCAGTATGTGAGT------------------------------------------------------------------
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