>input_sequence_60110
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--------ATGTTCGCGGTTCGCCGCCACGCCGCCTCCACCTCCGCTCCACTCCTCCGCCGCCGCCTCAC---CGCCCAG
CCCAATCCCATGCCCCCTCCGCCTACTCCACCGACGCTT------TCCAACGATGGCGCGTGGGCCTGGGCCGAGCGCGC
GGCCAAGCTCTCCCTGCTGGGGTTCACCGGCG-------CCGCCACCGCCTGTGCCGTCAGCGACACCTCCGTCTTCCTC
GACCGCACCAGGTCCAACGCC----CCCGCCCACTCGCCTGTTCTGCGGCG-----------------------------
TGTAGTTTACGATCTGATCTGCTAGCTCCTCGATCCTGGATCGTGTACTCAAATTTTGGTTCGTTACTTCGTTTACATAC
AAAAAAACAGGGTGGAGTATGTTTCCAACAAGGTAATGGAGATTGCTGCTCAGAACCAGCAGGTAGCGAGCGCGATCGGC
GGGCCTATGACGCCCAGGTTCTGGCACAGCATTTCCGTTGCCTGGAAGTGGAACCTCGCGAGGCATTACCTCTCCGGCAC
TCTCCAGGTATCCGGGCCACAAGGAGACGGCCTTCTTACCTTCCAGGCGGTTCGCTCCAGAGGTGGGCGTGTCTTCTTTA
GTTTCTTCTTTGTTGACATCTCAACTTACTTATGTGCGTGTCCAAGTGCTCAATAGTTGGATTAGGAGCCTTATACAATG
TATCTCGATATTGTCGAGATTGTTCTGTGC------TTCTTCCATTGCATACATATATGTTTATTGATAAAGAATGTTGA
TTCCTATTTCTATTTTATGTTGTGCCTTGAGTTCTTATGGATTCTGATTTAACATCACAACATCATTCTTATTTTTT-TT
CGCATCATGTGTTTTTCTTTGCAGATAAATCCTGGTTCCGGTTTCTACGGTACAGCGACTGGGAGATACCCATAATGGAT
GCCATCCTTGATGTTCCTACTGAAGATGGGAAGCACCAAACAGTAAGCGTAAGGATTCCAGACAACATGACTGCTCCACC
ACCTCAAGAGAAGACACGCTGTTTTTTCATTACTCAGAACAT--------------------------------------
---------------------------AAGTATTACAGCCTCTATTCATAAATATAAGACGTTTTGTCAGTTCAATTTAA
ACTGCCAAAATGTGTTATACTTAAAAACAGAGGTAGCTAGTACTAGATAA------------------------------
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>chr2B_1_TraesCS2B01G009600
CAGGGCATAATGAGGATAAAATAAAGAAAAGGGAAAACATTACCTCGGGGACACTTCGTCGAGCACCTTGCTAGGAAGGG
AAAGGTGTGTGTCATATCAGTGATGTTGGTGCACCGGCGAGGCTGCC-AAAGATGAAGGCGAGATGGAGGGAGAAG-GGG
TGGATGCGATAGAGCCGATTCCCGTCCTTGTTGTGGACCTATGGAGCTGCGACGAATTCTGCCACGGCTCGGCTCCACCG
CCGGGGGTGGTCGCCAAGGTGGACGTTGGGAGCTTACATGGGGGGTCACAGGTTGCCTCCTGCTCCCCTGGCGGAGGCGT
TGGGCGCGGCATTAGGATGTCGTGGCGTTGGCCTATGTTCGTTGTTGCTG-------CCGCTCCCCCTTGTCGTGCATTT
CTCTCTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTCTTGAATTGGCCACTTTTTCTCAAAAGTAGAACAGTTTAACCCCTGA
AATGTAGACAGGGAAAAACAAACACGTGCAACTCTACATTTTTTCAGCAACAAAAATTTAAA-TTAAGTAGAGGGCGTTG
CGTTAAAAATGCCAAATTTTTCTC------------------------------------TAACTAACTAGAGAAAGAAA
GTAGTACGGGCCCTGAAAGGGCGCACAAGGCAGCCAGACGCTACTGGGATATTCTTCTTCTCGCCTCC--TCTCCGCCGC
CAGCGAAAATGTTCGCGGTTCGCCGCCACGCCGCCTCCACCTCCGCTCCACTCCTCCGCCGCCGCCTCAC---CGCCCAG
CCCAATCCCATGCCCCCTCCGCCTACTCCACCGACGCTT------TCCAACGATGGCGCGTGGGCCTGGGCCGAGCGCGC
GGCCAAGCTCTCCCTGCTGGGGTTCACCGGCG-------CCGCCACCGCCTGTGCCGTCAGCGACACCTCCGTCTTCCTC
GACCGCACCAGGTCCAACGCC----CCCGCCCACTCGCCTGTTCTGCGGCG-----------------------------
TGTAGTTTACGATCTGATCTGCTAGCTCCTCGATCCTGGATCGTGTACTCAAATTTTGGTTCGTTACTTCGTTTACATAC
AAAAAAACAGGGTGGAGTATGTTTCCAACAAGGTAATGGAGATTGCTGCTCAGAACCAGCAGGTAGCGAGCGCGATCGGC
GGGCCTATGACGCCCAGGTTCTGGCACAGCATTTCCGTTGCCTGGAAGTGGAACCTCGCGAGGCATTACCTCTCCGGCAC
TCTCCAGGTATCCGGGCCACAAGGAGACGGCCTTCTTACCTTCCAGGCGGTTCGCTCCAGAGGTGGGCGTGTCTTCTTTA
GTTTCTTCTTTGTTGACATCTCAACTTACTTATGTGCGTGTCCAAGTGCTCAATAGTTGGATTAGGAGCCTTATACAATG
TATCTCGATATTGTCGAGATTGTTCTGTGC------TTCTTCCATTGCATACATATATGTTTATTGATAAAGAATGTTGA
TTCCTATTTCTATTTTATGTTGTGCCTTGAGTTCTTATGGATTCTGATTTAACATCACAACATCATTCTTATTTTTT-TT
CGCATCATGTGTTTTTCTTTGCAGATAAATCCTGGTTCCGGTTTCTACGGTACAGCGACTGGGAGATACCCATAATGGAT
GCCATCCTTGATGTTCCTACTGAAGATGGGAAGCACCAAACAGTAAGCGTAAGGATTCCAGACAACATGACTGCTCCACC
ACCTCAAGAGAAGACACGCTGTTTTTTCATTACTCAGAACAT--------------------------------------
---------------------------AAGTATTACAGCCTCTATTCATAAATATAAGACGTTTTGTCAGTTCAATTTAA
ACTGCCAAAATGTGTTATACTTAAAAACAGAGGTAGCTAGTACTAGATAAGTAGTCCACATAATTGATGGAGACCAAAGT
AAGTGG------------------GATGTAATGAAAGCTCAAATTCTTTTGGAGGTTCATTATTCATAGTATCTTTTACT
GGTTGTGG-CGCCTGTGATGCATACTTTGTAC---CAACTCTGAGCTGAACATATTAAGACAAGTTGTTGCTGTGTTACT
CTCTATTTGTTAGGTAAATTGGGTAGATGAACCTTACACCGCATAACTAGTTGTGCAAT------TAGCCATAAATAATT
TGAAATAAAAAGTTCTAACAAAATATGACAAATCAAACTGCAACAACTATGTACGGCATATTTGAAACTTGTTTTTCCAC
ACCACGCATTACATATGCCTTAAGGGACAAATAAGTTCAACTAGGCTAGGAAG-GAGTAGATGTTGACGGCAGCGTCGCT
GCAGCTCGCATGTCTCACGAAGACGAGG------------AGTGTTCCTTGCATGTATCCATGTTAATGTAGCAACGATC
ATTTAGCAAATAACAATAGCAATA---TTTAGCGGTGCATAACTTTGCCTTGCTGCGCACCCTGCTCGGTAGATTGATCT
TCTCGCCGTCCATGCCTAAGCCGATGGTTTGGACTTATGGAATAGCATACACATATGAACCACTTTTATATATGCAGTTT
CTATATGATTTATAGAGAGACGAGATTTCGTACATATAGATCAGAGAGAGATACATGCATTGTGCAATGGTGGCGGAGTA
CAAAAGGTGCAAAGAGAGCAACACCAGTGA----------------TGCTTGTTCATGC-TCTGATCTGATAACAACACT
AGGTTGGCACTGACGTGATCTATGGTTGTTGATGAGTAAGCTTGCTTGCTTTCAAGTGTCAACAGCTCGCATATATATAA
GGTGTATTTGTTTTTTCAAAAGACAAACGAATGCGTGTTTGACCGAGTTTCTAGGAAAATCTATCAATATCCACAATACA
AAATGTATATCATTTGATTCATCACGAAAAGTAGTTTCATATTTTATTTATTAGGTATTGCAGATGTTGTT
>chr2A_1
CAGTGCATAATGGGGTTAAAACCGAGAAAAGGGGTAACATTACCTCGGGGACAGTTCGTCGAGCACCTTGCTAGGAAGGG
AAAGGTGAGTGTCGCAACGATGACGTTGATGCACCGGCGAGACTGCTGAAAGATGAAGACGGGATGGGAGGGGGGGAGGG
TGTATGTGATATGAACCATTCCTGTCCTTCTTGTCGACCTATGGAGCTATGACGAATTCTGCCACGGCTCGGCTCCAGCA
TCAAGGGCAGTTGGCAAGATGGGCGCTAAGAGGTCGCACGAGGGTTATT-GGTGGCCTCCTGCTCTCCTGGCGGATGCTT
TGGGTGCGGCGTTAGGATGTCATGGCGTTGGCCCATGTTTGTTGTTGTTGTTGCTGCCCCCTCCCCCCTCTCGTGCATCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGG----------
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----------------------------------------TGACCACTTTTTCTCAAAAGTAGAACAATTTAAACCCTAA
GATGTAGACAGGGAAAAACCAACACATGAAACTCTACATTTTTTCAGCAACAAAATTTTAAAATTAAGTAGAGGGCGTTG
CCCTAAAAATGCCATATTTTTGTCTAACTAACTTTTTCCTTTTTTTGAGGATCTTTTGTATAACTAACTAGAGAAAGAAA
GTACTACGGGCCCAGAAAGGGCGCACAAAGCAACCAGACGCAACTGGGATATTCTTCTTCTCGCCTCCCA--TCCGCCGC
CGGCGAAAATGTTCGCGCTTCGCCGCCAGGCCGCTTCCACCTCCGCTCCACTCCTCCGCCGCCGCCTCCTTTACGCCCAG
CCCAATCCCATGCCCCCTCCGCCAACTCCACGGACGC------CGTCCAACGATGGCGCGTGGGCCTGGGCCGAGCGCGC
GGCCAAGCTCTCCCTGCTGGGGTTCACCGGCG-------CCGCCACCGCCTGCGCCGTCAGGGACACCTCCGTCTTCCTC
GATCGCACCAGGTCCAACGCC----CGT--CCACTCGCCCGTTTAC-----------------AAGTTGTGCGGCGTGTA
CGTAGTTTATGATCTGATCTGCTATCTCCTCGATCCTGC-------ACTCAAATTTTTGTTCGTTTACATAC-------C
AAAAAAACAGGGTGGAGTATGTTTCCAACAAGGTAATGGAGATGGCTGCTCAGAACCAGCAGGTAGCGAGCGCGATCGGC
GGGCCTATGACGCCGGGGTTCTGGCACAGCATTTCCATTGCCTGGAAGTGGAACCTCGCCAGGCATTACCTCTCCGGCAC
TCTCCAGGTATCCGGGCCCCAAGGAGACGGCCTTCTTACCTTCCAGGCGGTTCGCTCTAGAGGT----GTGTGTTCTTTA
GTTTCTTCTTTGTTGACATCTCAACTTACTTATGTGGGTGTCCAAGTGCTCAATAATTGGATTAGGAGCCTTATACTATG
TATCTCGATATTGTCGAGATTGTCCACTGTACTGTGTTCCTGCATTGCAGATATATATATTTATTGACAAATAATGTTGA
TTCCTATTCATGTTTTATGCTGTGCCTTGAGTGCTTATGGATTCTGATTCAACATCACAACCTAATTCTTTTTTTT----
--CATCACATGTTTTTCCTCGCAGATAAATCTTGGTTCCGGTTTCTACGGTACAGCGACTGGGAGATACCCATAATGGAT
GCCATCCTTGATGTTCGTACTGATGACGGGAAGCACCAAAGAATTACGGTAAGGATTCCAGACAACATGACTGCTCCACC
ACCTCAAGAGAAGACACGTTATTTCGTCATTACTCAGAACATGATCGCTATCAAGAGGTGATTGTTTTCTATGCATTATC
CGTGAGAGAAATAAGTAGTGCACACT-AAGTATTACACCTTCTGTTTTTAAATATAAGACATTTTGTCAGTTCAA-----
ACTGACAATATGTCTTATATTTAAAAACAGAGGTAGCCAGTACTAGATAAGTAGTCCACATAACGGATGGAGACCAAAGT
AAGTGGGACGTTGGATGATTTCCTGATGTACTGAAAGCTCAAATTCTTTTGGAGGTTCATTATTCATAATATCTTTTGCT
GGTTCTGG-CGCCTGTGATGCATACTTTGTAC---CAACTCTGAGCTGAACATATTAAGACAAGTTGTTGCTGTGTTACT
CTCTATGTGTTAGGTAAATTGGGTAGATGAACCTTACACCACATAACTAGTTGTGCAATAGAACTTAGCCATAAATAATT
CGAAATAAAAAGTTCTAACAAAATATGACAAATCAAACTGCAACAACTATGTAGGGCATATTTGAAACTTGTTTTTCCAC
ACAACGCATTACGTATGCCTTGAGGGACAAATAAATTCGACTAGGCTAGGAAACGAGTAGATGTCGACAGCAGCGTCACC
GCAGCTCGCATGTCTCGTGAAGACGAGTAATGACTTTCATAGTGTTCCTTGCATGTATCCATGTTTATGTAGCAGCGATC
ATTTAGCAAGCAACAGTAGCAATAATATTTAGCGGTGCATATCTTTGCCTTGCCGCACACCCTGTTCGGTAGATTGATCT
TCTCGTCTTCCATGCTGAAGCCGATGGTTTGGCC-TATGGAATAGCATACACATATGAACCACTTCTATATATGCAGTTT
CTATATGATTTATAGAGAGACGAGATTTCATACATATAGATCATAGAGAGATACATGCATTGTGCAATGGTGGCGGAGTA
TAGAAGGTGTCGAAAGAGAAACGCCGGTGCGAGGACGTGGACCGTGTGCTTGTTCATCCTTCTGATCTGATAACAACACT
AGCTTCGTACTGACGTGATCTATGGTTGTTGATGAGTAAACTTGCTTGCTGTCAAGTGTCAACAGCTCGCCTATATATAA
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>chr2D_1
CAGGGCATAATGAGGATAAAATCGAGAAAAGGAAAAACATTACCTCGGGGACACTTCGTCGAGCACCTTGCTAGGAAGGG
AAAGGTGTGTGTCACATCAGTGATGTTGGTGCACCGGCGAGGCTGCC-AAAGATGAAGGCGAGATGGAGGGAGAAG-GGG
TAGATGCGATATAGCCGATTCACATCCTTGTTGTGGACCTATGGAGCTGCCACGAATTCTGCCATGGCTTGGCTCAGCGT
-CGGGGGTGGTCGCCAAGGTGGACGTTGGGAGCTTGCATGGGGGGTCACATGTTTCCTCCTGCTCCCCTGGCGGATGTGT
TGGGCGCGGCATTAGGATGTGGTGGCGTTGGCCTATGTTTGTTGTTGTTGTTGC----CGCTCCCCCTTGTCATGCATTT
TT-----------------------------------------------------TCTCTCTCTCTCTG-----------
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-----------------------------CTCTCTTGAGTTGGCCACTTTTTCTCAAAGGCAGAAAATTTTAAACCCTGA
AATGTAGACAGGGAAAAACCAACACATGAAACTCTATACTTTTTCAGCAACAAAATTTTAAA-TTAAGTAGAGGGCGTTG
CGCTAAAAATGCCAATTTTTTCTC------------------------------------TAACTAACTAGAGAAAGAAA
GTACTACGGGCCCTGAAAGGGCGCACGAGGCAGCCAGACGCAACTGGGATATTCTTCTTCTCGCCTTCCCTCTGCACCGC
CAAGGAAAATGTTTGCCCTTCGCCG-------------------------------------------------------
-------------CCCCTCCGCCTACTCCACCAACGTCGTCCTCGTCCAACGATGGCGCGTGGGCATGGGCCGAGCGCGC
GGCAAAGCTCTCCCTGCTGGGGCTCACCGGCGTAGGCGGCCGCCACCGCCTACGCCGTCAGCGACACCTCCGTCTTCCTC
GACCGCACCAGGTCCAAATCCAACGCCCGCCCACTCGCCCGTTTACCTGTTATTCCTTTCCACAAGTTGTGCGGCGTGTA
TGTAGTTTATGATCTGATCTGCTAGCTCCTCGACCCTGC-------ACTCAAATTTTGGTTCGTTTACATAC--------
-AAAAAACAGGGTGGAGTATGTTTCCAACAAGGTAATGGAGATGGCTGCCCAGAACAAGCAGATAGCGAGCGCGATCGGC
GGGCCGATGACGCCAGGGTTCTGGCACAACATTTCCATTGCCTGGAAGTGGAACCTCGCGAGGCATTACCTCTCCGGCAC
TCTCCAGGTATCCGGGCCCCAAGGAGACGGCCTTCTTACCTTCGAGGCGGTTCGCTCTAGAGGT----CTGTGTTCTTTG
CTTTCTTCTTTGTTGACATCTCAACTTACTTATGTGCGTGTCCAAGTGCTCATTAATTGGATTAGGAGCCTTA--CTATG
TATCTCGATATTGTCGAGACTGTCCGCTATACTGTGTTCATGCATTGCAGATATACATGTTTATTGATAAAGAATGTTGA
TTCCTATTCATGTTTTATGCTGTGCCTTGAGTGCTTATGGATTCTGATTTAACATCACAACATCATTCTTATTTTTTGTT
CGCATCATGTGTTTTTCTTTGCAGATAAATCCTGGTTCCGGTTTCTAAGATACAGCGACTGGGAGATACCCATAATGGAT
TCCATCCTTGATGTTCGTACTGAAGATGGGAAGCACCAAAGAATAAGCGTAAGGATTCCAGACAACATGACTGCTCCACC
ACCTCAAGAGAAGACACGTTATTTCGTCATTACTCAGAACATGATCGCTATCAAGAAGTGATTGTTTTCTATGCATTATC
CGTGAGAGAAATAAGTAGTGCGCACATAAGTCTTACACCTTCTGTGTTTAAATATAAGACGTTTTGTCAGTTCAATTCAA
ACTGCCAAAATGTCTTATATTTAAAAACAGAGGTAGCCAGTACTACATAAGTAGTCCACATAACGGATGGAGACCAAAGT
GAGTGGGAGGTTGGATGATTTTCTGATGTACTGAAAGCTCAAATTCTTTTGGAGGTTCATTATTCATAATATCTTTTGCT
GGTTGTGGACGCCTGTGATGCATACTTTGTACTACCAACTCTGCGGTGACCATATTAAGGCAAGTTGTTGCTGTGTTACT
CTCTATTTGTTAGGTAAATTGGGTAGATGAACCTTACACCACATAACTAGTTGTGCAATAGAACTTAGCCAGAAATAATT
TGAAATAAAAAGTTCTAACAAAATATGACAAATCAAACTGCAGCAACTATGTAGGGCATATTTGAAACTTGTTTTTCCAC
ACAACGCATTACATATGCCTTAAGGGACAAATAAATTTGACTAGGCTAGGAAAAGAGTAGATGTCGACGGCAGCGTCGCC
GCACCTCGCATGTCTCGCGTAGACGAGTAGTGATTTTCACAGTGTTCCTTGCATGTATCCATGTTAATGTAGCAGCGATC
ATTTAGCAAGCAAAAGTAGCAATA---TTTAGCGGTGCATAACTTTGCCTTGCCGCACA---------------------
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>SNPs
----------------------SS--------------------------------------------------------
--------------S-----------------------------------------------------------------
-----------S-------------------------------------------------------------------S
S----------------------------------S---------------------------------------S----
---------------------------------------S-------S--------------------------------
---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S----------------------------S-----S------
-------------------S-----S--S--------------------------S------------------------
--S-----------------------------------------------------------------------------
---S-------------------------------------S--------------------------------------
-----------------S----------S-----S---------------------------------SS----------
-------------------------------------SS-----------------------------------------
----------------------------------------------------S---------------------------
---------------------------------------S---SSS-S-SS-----------------------------
---------S----------------------------SSSSSSSS-------------------SSSSSSSSSSSSSS-
-------------------------------------------S------------------------------------
--------------SS--------------------S-------------------------------------------
------------------S--------------------------------------S------SSSS----S-------
-------------------------------------------------------S--------------------S---
-----------------------S-SS--S---------S-S-------S-S----------------------------
--------SS-S-------S------------S-----------------------------------------------
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----------------S-----------------------S-S-------------------------------------
------------------S-S---SS------------------------------------------------------
-------------------------------------S-S---S--SS-----------------------------S--
-------------S-----S-----------------S-------------------------SS---------------
------------------------------S-------------------------------------S--------S--
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----------------------------------------S---------------------------------------
-----------------------------------------------------S--------------------------
--S-------------------------------S---S-------------S-----------S--------------S
----------------S----------S----------------------------------------------S-----
---------SS----S-------------------------------------S--S-------S---------------
-----S-S-------SS---------------S-S------------------------------S--------------
-----------------------------S-------------S------------------------------------
S-S------SSS-S----S---S--S---S---------------------------S----------------------
--S--S-S-------------------------------S----------S-------------------S---------
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_883
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---------------------------------------------------------------TTAAGTAGAGGGCGTTG
CGT-----------------------------------------------------------------------------
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>reverse_2737
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----------------ACGAAGACGAGGAGTGTTCC--------------------------------------------
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