>input_sequence_60085
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------ATGGCGGAGGCC------GCAAG------TGCG
GCGCCTCTACTCCGCGGCCTCCCAGATGAGGTCGTCATCTGGGAGATCCTGCCCCGCCTTCCCCCAAAATCCATTCTCCG
CTGCCGCGCCGTCTGCCCTGCGTGGCGCCGCGCCACCTCCGCCCGCGACTTCCTCCTCGCCCACCACGCCCGGCAGCCCG
CGCTCCCCATCCTCGACGGCTTGAACACCGTCGGCAAGGG---------CATAGACATCATCACC---------TTCGAC
CACCG---------------GTCAGCCGACCAGCTTCAGCTGCAGTCCGTCGCGCGACTTGGCGCCACCCAC------C-
--------ACTTCGGTCTGGAGGCCTCGTGCGACGGCCTCCTCGTCCTCTCCATCCACGACATGAGCTTGGGTT---T--
----------CGCTATCTGCAACCCTGCAACTCGTCAGTATGCTCCTCTTCACCTGCTCTATGGCTCCAGGCTATTGGGG
ATGTACCCGCATAGCCCTAC------CGGTGAGTACCGATTATTGCTGTACTTGTCCTCCAAGATCATGCATGA------
------TGAAGGT---------------GAAGGTGCCTCCTACATCTTCACGATAGGCTCTGGCCATCAACCGAGGAACA
TAGGGTGCCCAGATGCCAAGGCACTGATATT---------CACCCTGTCCACCCTGTTCCGTGGTAGCTTGCATTGGCAC
---ATGAAGCAG------------------CAGGAGAGCGCAAGCAGCAGGATAATGGTTTTCGACACCACTGCTGAGTC
TTTCCGGCAGATGCGTGCTCCGGTTGTTCGTGGCT------TTGGTAACCTGTTTGAGATGGATGGAATGCTCGGCCTGT
CCATTATTAAG------GATGAACAGACAAGCGTTGATATCTGGGTGATGCAGGACTACGAAGGCCAGGTCTGGACCTTC
AAAGCC---CGGGTTGAATTGCCGATTGCAGAGATCCGGGTGCAATTTGGAAAGTTTGTCGATTTTTGGGATGTGGTGGC
CGCGCCTTCTGATGTTGAT---GTGCAAGTGCTGGTCAAAACTGACGAG---TGGCTGCTTCAGGTTGACACTGATGGCA
AGTTGGTTGCCAGTTTCCATCGCAGAGGCCTCAATCCTACTCAACGTCGGCTCAAACAGTCTCTAGTTTCACATACCTTC
TTTCCGACACAAGAGGGTTATGTTGTGAATGCGTCGCCTTTCATCTGA--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
>chr3D_1_TraesCS3D01G463900
ACATAATTTTCCGTTTCTTCTGCTAATGCAAAGATGTTATTCCTCACCTTCATTTCATTATCAGAAGAATCAAAATTTAA
GATTTAATACATCTTTCAATAGGAATAATATGTACTATAATCATGTGCTAGGTTGTCACTGACAAAAGCATACTGCGGTG
GTACTATAATCAAGCATAGGCTCGGTTGATCGTTAAGTTTATATAGTGTATGTATATCAACAAACCAAATATAAGTGCAT
ATTTCTTCATTGCGATTCAAATTGCTTTCTTGCATGAGATCTTTTTATATGCATCCGTTAAGTTTATAGTGTATGTATAT
CAATAAACCAAATATAAGTGCATATTTCTTCATTTCTTGTGCACATTTTTTTCCTTTTGTGTTGGCTCCATGTTTGTATA
TTTCTTCCTTTCCGGTTTTTCCATGAGAGCTTTTTTTTAGAAGCATGAGAGCTTCTTTCTGGAAATCAGGAGCCTCTTTC
TCTCTTTTCTTATTCCCAAGACGACTTCTTAACTCCCAAGAAAGTCAATGACGTATATAAACTGGGTGGATTAGATGTAA
GGGGGCGATGTGGGATTATTTAAAATGTGAATTGACCATTTAATTAGCACACAAAATAACTTGGCTTGTTGGTTATGGCA
TTACGTACTCAATAGGACGTAGGAAGGTTAGAAGAACGTACGGACGGGCGAAAATTATTGGACGGACGAAATTACGGTGG
TAAGAAATGATCGATGTTTTATTATTAAATTTAAAAAAAAGAAATTAGGTAAAGGTAAAGTTTTTTATTAGTCCATGGAA
AGAATTTTTTGTAACTAATTGTAAGTTTTAAAAAAATTATGTAGGGCGAGAGCTAAAGCCCAGCCCAGCCCAAATACATT
GTTGTTTCCGCGAGAGACGAAGACCTACCTCCGCCGCCGGCAAGGCCACTTCTCCACCATTCATTCCTCTTGCTCTGCTC
CT-GACCGGATCGAGAGCTCGCACACGCACCGCC------GGCCACCATGGCGGAGGCC------GCAAG------TGCG
GCGCCTCTACTCCGCGGCCTCCCAGATGAGGTCGTCATCTGGGAGATCCTGCCCCGCCTTCCCCCAAAATCCATTCTCCG
CTGCCGCGCCGTCTGCCCTGCGTGGCGCCGCGCCACCTCCGCCCGCGACTTCCTCCTCGCCCACCACGCCCGGCAGCCCG
CGCTCCCCATCCTCGACGGCTTGAACACCGTCGGCAAGGG---------CATAGACATCATCACC---------TTCGAC
CACCG---------------GTCAGCCGACCAGCTTCAGCTGCAGTCCGTCGCGCGACTTGGCGCCACCCAC------C-
--------ACTTCGGTCTGGAGGCCTCGTGCGACGGCCTCCTCGTCCTCTCCATCCACGACATGAGCTTGGGTT---T--
----------CGCTATCTGCAACCCTGCAACTCGTCAGTATGCTCCTCTTCACCTGCTCTATGGCTCCAGGCTATTGGGG
ATGTACCCGCATAGCCCTAC------CGGTGAGTACCGATTATTGCTGTACTTGTCCTCCAAGATCATGCATGA------
------TGAAGGT---------------GAAGGTGCCTCCTACATCTTCACGATAGGCTCTGGCCATCAACCGAGGAACA
TAGGGTGCCCAGATGCCAAGGCACTGATATT---------CACCCTGTCCACCCTGTTCCGTGGTAGCTTGCATTGGCAC
---ATGAAGCAGCAGGAGAGCGCAAGCAGCA------------------GGATAATGGTTTTCGACACCACTGCTGAGTC
TTTCCGGCAGATGCGTGCTCCGGTTGTTCGTGGCT------TTGGTAACCTGTTTGAGATGGATGGAATGCTCGGCCTGT
CCATTATTAAG------GATGAACAGACAAGCGTTGATATCTGGGTGATGCAGGACTACGAAGGCCAGGTCTGGACCTTC
AAAGCC---CGGGTTGAATTGCCGATTGCAGAGATCCGGGTGCAATTTGGAAAGTTTGTCGATTTTTGGGATGTGGTGGC
CGCGCCTTCTGATGTTGAT---GTGCAAGTGCTGGTCAAAACTGACGAG---TGGCTGCTTCAGGTTGACACTGATGGCA
AGTTGGTTGCCAGTTTCCATCGCAGAGGCCTCAATCCTACTCAACGTCGGCTCAAACAGTCTCTAGTTTCACATACCTTC
TTTCCGACACAAGAGGGTTATGTTGTGAATGCGTCGCCTTTCATCTGACCAGACGATTATGTTGTGAACATT--CAGCCC
TTCATCAGGGCTGGATTATTGAGTGTGGTGGTGCTTCTTAACAACCTAGCTCTCCATATCCACATGAACTGCGGTACATA
TGAACTCGATCCA--CTATTAGCCTGCTAGC-TTC--TTTGTTGATGTATAAGAAGTTATGATCAAGAAGCTCTGA----
----CTTTTACATGTTTGAGTTATA---------TTTCCTTGAATGTCCTTTGTGGCCGAAGTGGTTGCTGTCTGTGTTG
ATGCTAAAGTTAGAAGTCAGTCCTATCAGCGTCTG-AATGTTTTCCAGTTACTCTGGCCCATGTCTCTGTGTTCTTCAAA
TCTCTTCTTAGTATTCAGTACCAGTTAGCAATTCTACCTGCCTTGTCTCTAATTTTATTTAACTGAAGAATTGTCTTGTT
AGTTTATTGAGGCCTTCTTTTATAGAGATTACCCGCTGGTTGTCTTAATACTAAATTTTAGAAAGTATACATGTGTTTCC
TGTTCCTATGTTTTGTTTTAGCTGATGATGAAATGAGACAGATTATTGTCCTTATTGATTAGCAAGTTTCATCTGATCTG
GGAGCATTATCTAGTTTAATTGAAAGATTGCAATATAGTCAATTTGTCAATGGAATTTTCTGTTGCAATTTATTCTTGTT
CATGATTCCATAGCATCCGGTTAGGTATTGAAACATACTGCTGTAATTCTACCTTTCTATTCCATCATTTGGAATTATAT
TTATCATTTCACTTCAGTTGCTTACCATTTCAGAGAATCAATGCTTCATGTGATGTTCAATCTTAACATAAGCTCTAGAA
ATGAGACTTGTACTGATAAGGAGAAGAGAGGTTATCATGGTCATGCGCAGGTCTAGACTGTGTTCCCCTTTAAATTCTGT
AACTACCAGCCATGTTCTTTTTTCTCTGTGACCAGCGCAGTGCGTATGAAATTGGAACACTATGAGCTGGTTAGTTTCTT
TTTGATGTACATACAAGTTCTGATCAAGAATCT
>chr3D_942
CACTCCTCT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------TTGCTCTGCTC
CCGGAACGGATCGAGAGCTCGC--------CGCC------GGCGACCATGGCGGAGCCC------GCAGGAGCAGGAGCT
GCGCCTCTCCTCCCAGGCCTCCCGGACGACATCTCCGTCTGGGAGATCCTCGTCCGCCTGCCCCCAAAATGCGTCCTCCG
CTCCCGCGCCGTCTGCCCCGCGTGGCGCCGCGCCACCTCCGCCCGCGACTTCCTCCTCGCTCACCACGCCCGCCAGCCCG
CCATCCCCCTCCTCTACGGCTACAACTACG---------------CGTCCCTGGACCTCCTCCCC---------TTGGAC
TACCGGGCAGGGGTC---GTCGCCGTCGAC------CAGCTCCGGTCCGTCGCTCGACTTGCACACGACTCCTACCGCCT
TGATGACTGCTTCATTCTCGAGGCATGCTGCGACGGCCTCCTCGCCCTTACTGCCCACTACCCGCCGAAG------CT--
----------CTCCATCTGCAACCCGGCAACTCGTGAGTACGCTCCCCTTCCGCAGCTTGATGGCTTCAAGGTCCTGGGG
ATGTACCCTCACCTCCCTAC------CGGCGAGTACCGACTACTGCTATACCCGCTCCCCGT------------------
------TGAAGCT---------------CAAGGTGGCTCCTACATCTCCACATTGGGCTCCGACCAGCAGCCGAGGCACA
TAGGATTCCCTGAGGCCAAGGAACTGCTACTGAGATTCTCCACCGTGTCTATCCTGTTCCGTGGTAACCTGCATTGGTGC
---ACAG------------------GCAACC------------------TGATGATGGCATTTGACACCACCGCTGAGTC
GTTCCGGCAGGTGCGCTCTCCGGCTGGTCCTGGCTAC------TCTAACCTGATTGAGATGGGTGACATTCTTGGCATCT
CCAGTCTTAGT------AACGCAGCAGCAAGCGTTAATATCTGGGTGCTGCAAGATTATGAAGCCGAGCTCTGGACCTTC
AAATAC---CGGGTTGAGTTTCCGGTCGCAGAGATCAGGGAGCAATTTGGAAAGTCTGACAATTATTGGAATGTGGTGGC
CGTGCCTTGGGATGGCGAT---GTGCTCTTACTCATCAAATTTGA---TGACTGTCTGCTTCAGGTTGACATTCATGGCA
AGTTGGTTTCCAGTTTCCGTCGCAGAGGCCTTGGTCCTACAAATCTTCTGATCAAGCAAACTCTTGTTCAACATGCCTTC
TTTCCCACACTAGAGGGCTATGTTGTGAACTCTTCGCCTTTGGTCTGA--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
>chr3A_945
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------TCCACTCGCTCTGCTC
GTCGGACAGATCGAGGGCTCGCACCAACCGGCGAGGCGGAGGCGACCATGGCGGACACCGCAAGAGCAAG------AGCG
CCGCCTCCCAACCGCAGCCTCCCGGAGGAGATCCTCATCTGGGAGATCCTGGTCCGCCTGCCCCCCAAATCCCTCCTCCG
TTGCCGCGCCGTCTGCCCCGCCTGGCGCCGCGCCACCTCCACCCGCGACTTCCTCCTCGCCCACCACGCCCGTCAGCCCA
CCCTCCCTCTCCTCGACGACTTGAGCAGCATCGGCTACGGAGGCCACTCCTTAGACACCATCCCC---------ACCCCC
TCTCCCTTGGAGCACCAGGCCGCCACCGGC------CGGCTCCAGTCCGTCGTGCGATTTGATGATGCCTACTTCCGC--
----------------CTGTTCGCCTCCTGCGACGGCCTCCTCCTTCTCTCCATGGCCACTGGCTA---C------TT--
----------AGTCCTCTGTAATCCGGCGACTCGTCAGTTTGCTCGTCTCCCGCTCCTTCCTGGCTTCATACCCTTGGGG
ATGTATCCACACAGCCCAACTGGAACTGGGGAGTACCGACTATTGCTCTACCTGTCTTCCT------------CGGAACG
GGCACCTGACGCT---------------CAAGCTGGCTGCTACATCCTCTCTCTAGGCTCCGGCCAGCTGCCCAGGCACA
TAGGGTGCAGGGATGTGGAGAGACTCATAAA------CACCTTCGGATCTGTCATGTTCCATGCTAGCCTACATTGGCAC
CGGCA---------------------CAATG------------------TGATAATGGTATTTGACACCATAACCGAGTT
GTTTCGTGAGATGTCTGCTCCTATTGTTCCTGGCCCC------GTCAACCTGTTTGAGACGGATGGAATGCTTGCCGCCT
CCATCTTCACT------GATCCAACGACATCCATTGATATCTGGATGGCACAGGACTATGACAATGAGGTTTGGGCCTTC
AAATAT---CGGGTCAATTTGCCGGTTGCAGAGCTCACAGCACAGTTTGGGAAGATTAACAAACGTTGCTGTGTGGTGTT
TGCCTCTTCGGATGGTCAT---GCGCTTGTGCTGGCCAAATTTGG---AGATTGGCTGCTTCAGGTTGATATGGATGGCA
AGTTGGTTGCCAGTTTCCATGGCAGAGGCATTGGCCCTACTCAAAATCGGCTGAAACAATCTCTTTTTCAGCATACCTTC
TTTCCCACACTTGAGGGTTATGTTGTCAACGCGTCGCCTTTCATCTGACCAGATGATTATGTTGTCAACACA--CAGCCT
TTCATCTGAGGGAGG---TTGATTGTGGTAATGCTTCTTATGGGCCTGGCTCCCCGTGTCCGTTTGAACTGCAGTATGTA
TTAACTGCATCCA--CTATGAGGCCGCTAGC-TTC--TTTTTTGATCCATAAAAAATTATGATCAAGAAGCTCTGA----
----GTGTTACATGGTTGTGTTATA---------TTTCTCTAAATATCCTTTTGGGCTGAAGTGGCTGCCGTGAGTGCAG
ATGCTAAA------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
>chr3D_991
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------GCC------CGCGACCATGGCGGAGGCT------GCAGG------GCCG
ACGCCTCTCCTCCACGGCCTCCCGGACGAGATCTCCATCTGGGAGATCCTCGTCCGCCTTCCCCCGAAACCCCTCCTCCG
CTGCCGCGCCGTTTGCCGCGCCTGGCGCCGCGCCGCCTCCGCCCGCGACTTCCTCCTCGCCCACCACGCCCGCCAGCCCT
CCCTCCCCCTCCTCTTCGTCGACACCGACGACCAG---------TCCTCCATAGACATCATCACA---------TGCGAC
CAACG---------------CGCAGCCGAC------GAGCTCCACTCCGTCGCCCGGCTTGACGCCCCCTCC------G-
--------GCGTCTCTCTCAGGGCCTGCTGTGACGGCCTCCTCCTCTTACGCACCTGGAATAAGGGTGTCCCATCTCT--
----------CTCCATCTGCAACCCGGTCACTCGTCAATACGCTCCCCTTCACCGGCTTGATGACTTCAGGCTCTTGGGG
ATGTACCCACACAGCCCTAC------GGGCCAGTACCGACTACTGCTGTACCTGGCCCCGAGGTTCGAGGA---------
------CGATGCT---------------CAAAGAGGTTCCTACGTCTTCACATTGGGCTCCGGCCAGCAGCCGAGGCACA
TAGCAGGCCCTGATGCCAAGGAACTGTTGTAT------TTCCGCGGATCTACCCTTTTCCGTGGTAGCCTGCATTGGCAC
---ACGGACGGG------------------C------------------TGATAATGGTATTTGACACCACCGCGGAGTC
GTTCCGTCAGATGCACTCTCCAATTGTTTCTGACCACCGCAGTGGCGACCTGTTTGAGACGAGTGATATGCTTGGCATGT
TCAGTCTGAAT------GCACAAGCTACAATTGTTGATATCTGGGTGATGCAGGACTATGAAGGTGAAGTCTGGGCCTTT
AAACGC---CGGGTTGCATTGCCGATCGCAGAGATCATGGTGCAATTTCAAAATTCTGGAGATTGTTGGGAGCTAATGCC
TGCATCTTGTCATGGTGAT---GTGCTCCTGCTGGCCAAATTTGACGACGACTGGCTACTTCAGATTGGCATTGATGGCA
AGTTGGTTGCTAGTCTCCACCGCAGTTTCCTCCGTCCTACTCGACTTCGGCTCAAACAGTCTCTAGTTTCACATAACTTG
TTTCTGGCATTAGAGGGTTATGTTATCAATTCTTCGCCTTTCATCTGACC------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
>chr3A_991
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------GCC------CGCGACCATGGCGGAGGCT------GCAGG------GCCG
ACGCCTCTCCTCGACGGCCTCCCCGACGAGATCTCCATCTGGGAGATCCTCGTCCGCCTGCCCCCCAAACCCCTCCTCCG
CTGTCGCGCCGTCTGTCGCGCCTGGCGCCACGCCACCTCCGCCCGCGACTTCCTCCTCGCCCACCACGCCCGCCAGCCCT
CCCTCCCCCTCCTCTTCGTCGACGCCGACGACCAA---------TCCTCCATAGACATCATCACA---------TACGAC
CAACG---------------CGCAGCCGAC------AAGCTCCACTCCGTCGCCCGACTTGACGCCCCCTCC------G-
--------GCGTCTCTCTCAGGGCCTGCTGTGACGGCCTCCTCCTCTTACGCACCTGGAATAAGAGCGCCCCATCTCT--
----------CTCCATCTGCAACCCGGTCACTCGTCAATACGCTCCCCTCCACCGGCTCGATGGCTTCAGGCTCTTGGGG
ATGTACCCGCACAGCCCTAC------GGGCCAGTACCGACTACTGCTGTACCTGGCCCCGAGGTTCGAGGA---------
------CGATGCT---------------CAAAGAGGTTCCTACGTCTTCACATTGGGCTCCGACCAGCAGCCGAGGCACA
TAGCAGGCCCTGATGCCAAGGAACTCTTGTAT------TTCCGCGGATCTACCCTTTTCCGTGGTAGCCTGCATTGGCAC
---ACGGACGGG------------------C------------------TGATAATGGTATTTGAAACCACCGTCGAGTC
GTTCCGTCAGATGCACTCTCCAATTGTTTCTGACCATCGCAATGGCGACCTGTTTGAGACGAGTGATATGCTTGGCATGT
TCAGTCTGAAT------GCACAAGCTACAATTGTTGATATCTGGGTGATGCAGGACTATGAAGGTGAAGTCTGGGCCTTT
AAACGC---CGGGTTGAATTGCCGATCGCAGAGATCATGGTGCAATTTCAAAATTCTGGAGATTGTTGGGAGCTGATGCC
TGCATCTTGTTATGGTGAT---GTGCTCTTGCTGGCCAAATTTGACGACGACTGGCTACTTCAGGTTGACATTGATGGCA
AGTTGGTTGCTAGTCTCCACCTCAGTTTCCTCCGTCCTACTCGACTTCGGCTCAAACAGTCTCTAGTTTCACATAACTTG
TTTATGGCACTAGAGGGTTATGTTATCAATTCTTCGCCTTTCATCTGACCGAAGGATGTTGAGTATGGTGGTGCTTTTTT
TACGG---------------GAGTGTGGTGGTGCTTCTTAATGGCCTAACTCTTCGTATCCACGTGAGCTGCAGTATGCA
TTAGCTTGATCCTCTCTATGAGCCCACTAGC-TTTATTTTGTTGATGTATAAATTGTTATGATCAAGAAGCTCTAG----
----CTGTTACGGTGTTACCTGTTTGCTTTATATTTTATTTGAATACCCTTTTGGGCTGAAGTGGCTGCTGTGAGTGTTG
ATGCTAAAATTACAAATCATTTGGGTTAGAATCTGAAATGTTTTCCAATTGCTCTGACTCATGCCTCTGTTTTC------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
>chr3D_999
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------CCATGGCGGAGGCCGCAAGTGC---AGCTGGAGCG
ACGCCACTACTCCCTGGCCTCCCCGATGAGATCTCCATCTGGGAGATTCTCGTCCGCCTGCCCCCCAAACTCCTCCTCCG
CTGCCGCGCCGTCTGCCCCGCCTGGCGCCGCGCCACCTCCGCCCGCGACTTCCTCCTCGCCCACCACGCCCGCCAGCCCG
CCCTCCCCCTCCTCTACTGTCGCAGTGGCAAT---------GGCTCGTCCATAGACATCATCCCC---------TGCGAC
CATCA---------------GGCAGCCGAC------GAGCTCCGGTCAGTTGCCCGACTTGATGGCGCCCCC------G-
--------GCATCTTTCTGCAGGCCTGCTGTGACGGCCTCCTCATCTTGGGCACATGGAATAAGACGGATGAAGGCTACG
CTATGATGGCCTCCATCTGCAACCCGGTCACTCGGCAATATGCTCCCGTACACCAGCTTGATGGCTTTACCTTCTTGGGG
ATGTACCCACACTGCCCTAC------CGACGAGTACCGACTATTGCTCTACCTGGCCCCGAGGTTCAAGGA---------
------TGATGCT---------------CAAAGTGGCTCCTACATCTTCACGTTAGGCTCCGACCAGCCGCCGAGACACA
TAGGGTGCCGTGATGCCAAGGAATTGCTGCAT------TCCCCCAGATCTGTCCATTTTCATGGTAGCCTGCATTGGCAT
---ACAGAGCGG------------------C------------------TAATAATGGTATTTGACACCACCTCAGAGTC
GTTCCGGCAGATGCGCTCCCCAATTGTTCCTGACCATGTCATTGGCGACCTGTTTGAGATGAGTGACATGCTTGGCATGT
TCAGTCTTAAT------GCTGAAGAGACAATTGTTGATATCTGGGTGATGCTGGACTATGAGAGCCAAGTCTGGGCCTCC
AAAGGC---CGGGTTGAGTTGCCGATTTCAGGGATTAGGTTGCAATTAGAAAAGTTTGACACTTGGTTGGATCTGGTGGC
CGCATCTTGGAACGGTGATGACGTGCTCATGATGGTCAAATTTGAAGACGACTCCCTACTTCAGATTGACATTGATGGCA
AGTTGGTTGCTAGTCTCCATCGCCGACTCCTCTATCCTACTCGACTTCGGCTCAAACAGTCTCTAGTTTCACATACCTTC
TTTCCGACTCTAGAGGGTTATGTTGTCAATGCTTTGCCTTTCATCTGACCAGATGATTATGTTGTCAATATT--TAGCCT
TTGAACTGGGGGCAG---CTAAGAGAGTTGGTGCTTCATATCGGTCTAGGTCTCCGTATCCATGTGAGCTGCAGTATGTA
TTAACTAGACACT--CTACCAGCCCACTAGTTTTC--TTTGCTGATGTATAAAAAGTTATGATCAAGAAGCTCTGGTTGT
TATGGTATTACCTGTTTGCTTTATA---------TTTCTTTGAATATCCTTTTGGGCCCAAGTGGCTGATGTGAGTGTTG
ATGATAAA-TTACAAATCAATTGGACCATGGTTTGAAATGTTTTTCAATTTCTCTGACCCATGTCTATGTTTTC------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
>chrUn_1013
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------GCAAG------AGCG
CCGTCTCCCCACCGCAGCCTCCCGGAGGAGATCACCATCTGGGAGATCCTTGTCCGCCTGCCCCCCAAATCCCTCCTCCG
CTGCCGTGCCGTCTGCCCCGCCTGGCGCCGCGCCACCTCCACCCGCGACTTCCTCCTCGCCCACCACGCCCGCCAGCCCA
CCCTCCCTCTCCTCGACGACTTGAGCAGCATCGGCTACGGAGGCCACTCCTTAGACACCATCCCC---------ATCCCC
TTCCCCTTGGAGCATCAGGCCGCCACCGGC------CGGCTCCAGTCCGTCGTGCGATTTGATGATGCCTACTTGCGC--
----------------CTGTTCGCCTCCTGCGACGGCCTCCTCCTTCTCTCCATGGCCAATGGCTA---C------TT--
----------AGTCCTCTGTAATCCGGCAACTCGTCAGTTTGCTCGTCTCCCGCTCCGTTCTGGCTTCATACCCTTGGGG
ATGTATCCACACAGCCCAACTGGAACTGGGGAGTACAGACTACTGCTGTACCTGTCTTCCTCCA------------AACT
GGTACCTGACGCT---------------CAGGCTGGCTACTACATCCTCTCTGTAGGCTCCGGCCAGCTGCCCAGGCACA
TAGGGTGCAGGGATGTGGAGAGGCTCATAAA------CACATTCGGATCTGTCATCTTCCATGGTAGCCTACATTGGCAC
CGGCA---------------------CAACG------------------TGATAATGGTATTTGACACCACAACCGAGTT
GTTCCGTGAGATGTCTGCTCCGGTTGCTCCTGGCCCC------GCTAACCTGTTTGAGATGGATGGAATGCTTGCTGCGT
CCATCTTCACT------GATCCGACGACATCCATTGATATCTGGATAGCACAGGACTATGCCAATGAGGTTTGGGCCTTC
AAATAT---CGGGTCAATTTGCCGGTTGCAGAGCTCACAGCACAGTTTGGGAAGATTAACAAACGTTGCTGTGTGGTGTT
TGCCTCTTGGGATGGTCAT---GTGCTTGTGCTGGCCAAATTTGG---AGATTGGCTACTTCAGGTTGATATGGATGGCA
AGTTGGTTGCCAGTTTCCATCACAGAGGCGTTGGTCCTACTCAAAATCGGCTGAAACAATCTCTTGTTCAGCATACCTTC
TTTCCGACACTAGAGGGTTATGTTGTCAACGCGTCGCCTTTCATCTGACCAGAAGATTATGTTGTCAACACA--CAGCCT
TTCATCTGAGGGCGT---TTGATTGTGGTAATGTTTCTTATGGGCCTAGCTCCCCGTGTCCACCTGAACCGCAGTGTGTA
TTAACTGGATCCA--CTATGAGGCCGCTAGC-TTC--TTTTTTGATCCATAAAAAATTATGATCAAGAAGCTCTGA----
----GTGTTACATGGTTGTCTTATA---------TTTCTCTGAATATCCTTTTGGGCCGAAGTGGCTGCCGTGAGTGTAG
ATGCTAAA------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
>chr3D_1019
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GCG
ACGCCTCTCCTCCCTGGCTTCCCCGATGACATCGCCGTCTGGGAGATCCTCGTCCGCCTGCCGCCCAAGTCCATCGTCCG
CTGCCGCGCCGTCTGCCCCGCCTGGCGCCGTGCCACCTCCGACGGCGACTTCCTCCTCGCCCACCACGCCCGTCAGCCCG
CCCTCCCCATCCTCTACGGTCGCAGTGGTGAT---------GGCTCATCCATAGACATCATCCCC---------TACGAC
CATCA---------------GGCAGCCGAC------GAGCTCCGGTCAGTTGCCCGACTTGATGGCGCCCCCGCCCCCG-
--------GCATCTTTCTGCAGGTCTGCTGTGACGGCCTCCTCATCTTGGGCACATGGA-TAAGACGGATGAAGGCTACG
CTATGACGGCCTCTATCTGCAACCCCATCACTCGTCAATATGCTCCCCTGCACCATCTTGATGGCTTTAGCTTCTTGGGG
ATGTATCCACACAGCCCTAC------CGACGAGTACCGACTATTGCTGCACCTGGCCCCGAGGTTCAAGGA---------
------TGATGCT---------------CAAAGTGGCTCCTACGTTTTCACATTAGGCTCCGACCAACCGCCGAGGCACG
TAGGGTGCCCTGATGCCAAGGAACTGCTGCAT------TCCCCCAGATCTGTCCTTTTCCATGGTAGCCTGCATTGGCAC
---ACAGAGCGG------------------C------------------TGATAATGGTATTTGACACCATCTCAGAGTC
GTTCCAGCAGATGCGCTCCCCAATTGTTCCTGACCATGTCATTGGCGACCTGTTTGAGATGAGTGACATGCTTGGCATGT
TCAGTCTTAAT------GCCGAAGAGACAATTGTTGATATCTGGGTGATGCTGGACTATGAGAGCCAAGTTTGGGCCTCC
AAAGGC---CGGGTTGAGTTGCCGCTTTCAGGGATTAGGTTGCAATTAGAAAAGTTTGGCACTTGGTTGGATCTGGTGAC
CGCATCTTGGAACGGTGACGACGTGCTCATGCTGGTCAAATTTGAAGACGACTCGCTACTTCAGATTGACATTGATGGCA
AGTTGGTTGCTAGTCTCCATTGCCAATTCCTCTGTCCTACTCGACTTCGCCTCAAACAGTCTCTAGTTTCACATACCTTC
TTTCCGACACTAGAGGGTTATGTTGTGAATGCTTCACCTTTCGTTTGACCAGACGATTATGTTGTCAATATT--TAGCCT
TTCAACTGGGGGCAG---CTGAGAGAGGTGGTGCTTCATATCGGCCTAGGTCTCCGTATCCATGTGAGCTGCAGTATGTA
TTAACTGGACACT--CTATAAGCCCACTAGTTTTC--CTTGTTGATGTATAAAAAGTTATGATCAAGAAGCTCTGGTTGT
TATGGTGTTACCTGTTTGCTTTATA---------TTTCTTTGAATATCCTTTTGGGCCGAAGTGGCTGATGTGAGTGTTG
ATGATAAA-TTACAAATCAATTGGACCATGGTCTGAAATGTTTTTCAATTTATCTGACCCATGTCTATGTTTTC------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
>chr3B_1019
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GCC
GCGCCTCTCCACCCCGGCCTCCCGGATGAGATCTTCATCTGGGAAGTCCTCGTCCGCCTGCCCCCCAAAGCCCTCCTCCG
CTGCCGCACAGTCTGCCGCGCCTGGCGCCGCGCCACCTCCGCCCGCGACTTCCTCCTCGCCCACCACGCCCTCCAGCCCG
CCCTTCCCCTCCTGTACGTCCACAACTATGTCGGCGACAACATCGAGTCCCTAGACATCGTCCCC---------TTCGAC
CGCCGGGCAGGGGTC---GCGGCCGACGAC------CAGCTCCGGCCAGTCGCGCGACTCGGCCAGGGCCCCTTCCGTGC
GA------------------TCGCCTCCTGCGACGGCCTCCTCGTCTTCTCCAACGACTGC------CGC------TT--
----------CTCCCTCTGCAACCCGGCGACTCGTCAGTATGCTCGCCTCCCGGTGCCTCCTGGCTTCGTGCCCCTGGGG
ATGTACTCGCACAGCCCAAC------CGGCAAGTACCGGCTATTGCTGTACAAGCTCTCCA------------CTGGACC
GGCGCCTGACGCT---------------CAAGGTGGCTCCTACGTGTTGGTATTAGGCTCCGGCCAGCCGCCACGGTGCA
TAGGGTGCCCTGATGCTAGGGAACTGGTATT---------CAGCCCATCCGTCCTGTTCCGTGGTGGCCTGCATTGGCAC
---AGAGAGCAGAATGAG------------A------------------GGATAGTGGTATTCGACACCACCACTGAGTT
GTTTCGGCACATGTGCGTTCCGGTTGTTTCTCGCTGC------ACTAACCTGTTTGAGATGGATGGAATGCTCGGCGTGT
CCAGCTTTAAT------TATGCAGCGGCAACCATTGATATATGGATGGCGCAGGACTATGAGAGCGAGGTCTGGTCTAAC
AAACAC---CACGTTGAGTTGCCGGTTGCAGAGCTCACCATGCGCTTTGGAAGGTTTAACAGACATGGGTTTGGGGTAGT
CGCTTCTTCGGATGGTCAT---TTGCTCATGCTGCTCAAATTTAG---CGACTGGCTACTTCAGGTTGATATGGATGGCA
AGTTGGTCGCTAGTTTCCATTGCAAAGACCTTGCTTATACTCGATTTTGGCTCAAACAAACTTTAGTTTCGCATACCTTC
TTTCCGACACTAGAGCATTATGTTGTGAACGCTTCGCCTTTTATATGA--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
>chr6A_1027
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----TCTCCTCCATGGCCTCCAGGATGAGATCTTCATGTTTGAGATCCTCGTTCGCCTGCCCCCCAAATCCCTCCTTCA
CTGCTGTGCCGTCTGCCACGCCTGGCGCGGCGCCACCTCCGACCGCGACTTCCTTGTCGCCCACCACGCCCGCCAGCCCT
CACTCCCTCTCCTTTACACTGAAATTGATGACCCG---------CCGTCCATAGACATCATCACCCCCTTCCCCTGCGAC
CACCG---------------GGCAGACGAC------AAGCTCCAGCCCGTTGCCCAACTCAGTGGTGCCCAT------G-
--------ACTTCTTTCCCGTGGCCTGCTGTGACGGCCTCCTTGTCTTCACCACCTGCGGGGGTGAACGC------CT--
----------CTCCATCTGCAACCCGGCCACTCGTCAGTATGCTCGTCTCAACCAGCTTGATGACTTCACGGTTTTGGGG
ATGTACCCACACAGCCCTAC------CAGCGAGTACCGACTACTGCTCTGCGTCTGC---------------------CC
GGAAACTGATGCT---------------CAAAGTGGCTTCTACGTCTTCACATTAGGCTCTGACCAGCAGCCGAGGCACA
TCGGGGCGC---ATGCCAAGGGACTGTTGCAACACCAAC---------CTGTCCTTTTCCGTGGTAGCCTGCATTGGCAC
---ACAGAGCGA------------------C------------------TGATAATGGTATTTGACACCACCGCTGAGTT
GTTCCGGCAGATGCGCTCTCCGATTGATCCCGGCCATGCCGAGGCTGACCTGTTTGAGATGGGTGACTTGCTTGGCATGT
ACAGTCTTAAT------GAAGAAAATACCATTGTTCATGTCTGGGTGATGCAGGACTACGAAGGCCAAGTCTGGGCCTCC
AAAGCCTGGCGGGTTCAATTGCCGATTGCAGAGCTAAGGGTGCTATTAAAAAACTTTCGCGGTTTTTGGTGTGTGGATGT
TGCATATTGGGATGGTGAT---GTCCTCGTGCTGGTCGATATTGACAAGGACTCGCTACTTCAGTTTGACATTGATGGCA
AGTTGGTTGCTAGTCTCCATCGCAGATTTCTCTG--CTAGTGGACTTGGGCTCAAACAATCTCTAGTTTCACATACCTGC
TTTCCGGCACCAGAGGATTATGTT--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
>chr3A_1034
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------CGCAGCCTCCCCGACGAGATCTCAATCTGGGAGATCCTCGTCCGCCTCCCTCCCAAAGCTCTCCTCCG
CTGCCGCGCCGTGTGCCGCGCCTGGCGCAGCGCCACCTCCACCCGCGACTTCCTCCTTGCTCACCACGGACACCAGCTCA
CCCTTCCCCTCCTCTACGGCTGCACCAACCTCGGCGTCCAAGGCGAGGTCCTAGACATCATTCCC---------TTCGAC
CACCGCCCAGGGCTA---GCCGCCGCCGAC------CAGCTTCAGTCCGTCGCGCGACTTGGCCTTGGCCTCTCCTATCC
T------------TGTGTGGAGGCCTCCTGCGACGGTCTCCTCCTCCTCTCCCTAGGCCGGAGAGA---C------TT--
----------CTTCGTCTGCAATCCGGCAACTCGTCAGTATGCTCCACTCCAACAAATTTATGCCTACGTGCTGCTGGGG
ATGTACCCGCACAGCCCAAC------CGGCGAGTACAGATTATTGCTCTACTGGGACGAGGATTTGATTTATCCAGATCT
GGCACCTGGCACA---------------CAAGATGGCTCCT--GTCTTCACAATAGGCTCCGGCGAGCCGCCCAGGTACA
CAGGGTACCCTGATTCAGGCATATTGATGTTTAGCAAC---------TCCATTTTGTTTCATGGTAGCCTGCATTGGCAC
---ATAGACAAGGATGCGAGCACAAGCAACA------------------TGATAATGTTATTTGACACCACCTCTGAGTC
CTTCCGGCAGATGCGCGCTCCGGTTGTTCCTAGCCACGCTTC------CCTGTTTGAGATGGATGGAATGCTCGGCATGT
CCAGCTTTAAT------CATGCAGCCACAACCATTGATATCTGGATGTCACAAGACTATGATAGCGAGGCCTGGGCCTTG
AAATAC---CGTGTTGATTTGCCGGTTACAGATCTCACTGCGCAGTTTGGAAAGTTTACCGAAACTTGGAATTTGGTGGT
CACTTGTTGGAACGGTGAT---GTGCTCATGCTGATCAAATTTGG---TGAGTGGCTACTTCAGGTTGACGTGGATGGCA
AGTTGGTTGCCAGTTTTCACCGCAAATTAGTCCGTTTTACTCAATTCCAACTCAAACAAACTCTTGTTCCACATACCTTC
TTTCCGACACTAGCGGGTTATGCTGTGAACACTTTGCCTTTCATATCACCAGATGATTATGTTGTGGACAGC--TAGCCT
TTCACTCGAGGGCTG---TTGAGTG--------CTTGTTAGCGACATAGCTATCTGTATCCACATGACCTGTAGTATTTA
TTCACTGGATCTG--CTATGAGCCTGCTAGC-TTC--TTTGTTGATGTGTAAAATGTTATAATCAAGGAGCTCTGA----
----C-CTTACGTGGTTGTGTTTTA---------TTTCTGTGAATATCCTTTTGGGCTGAAG--------ATGGGTGTTG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
>chr3B_1313
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------GAGGCCTCCTGTGACGGCCTCCTCGTCCTATCCGTCGGGCTGACGAGCCTA----------
-----------GCTGTTTGCAACCCGACAACTCGTCAGTATGCTTCCCTCCCGATGCTCTATGCCTTCTTGATACTGGGG
ATGTATCCGCACAGCCCAAC------CGGGGAGTACCGACTGTTGCTGTACAGGACCCAAGGGTTGAGGTT---------
------GGAAGCTATGGTAAATGATTGCCAGGATGGCTCCTACGTCTTCACTTTAGGCTCCGGCCAGCCGCCGAGGCTCA
TAGGGTGGTCGGATGTGGAGCAGCTCACATGCAG------CTTTGGTTCTCTCCTGTTTCGTGGTAACCTGCATTGGCAT
CGTATGAAGCATAGAGAGAGCGAAAGCAATG------------------CCATAATAGTATTCGACACCACAGCTGAGTC
GTTCCGGCATATGCGTGCTCCGATTATTCTTGGCG------GTGGTAACCTGTTTGAGATGGATGGAATGCTCAGCATCT
TGAGCCTCATTAATGCAGACACAGTCACAGCCATTGACATCTGGATGATACAGGACTACGAGGCTGAGGTCTGGGCCTTG
AAATAC---CGGGTTTTATTGCGGCCTTCAGATAACG---------------GATTTCACAATTATTGGGATGCAGTGGC
CGTGCCTTGGGATGGTGAT---GTGTTTGTTCTGTTAAAATTTGA---CGGTCAACTACTTGAGGTTGACATTGATGGCA
AGGTGGTTGCCAATTTCATTCAAGGAGGCCTCAATCCTTCTCCACATCGGCTCAAACAAACTCTAGGTCCACATACCTTT
TTTCCAACACCGGAAGGTTATGCTGTGAATGCTTCGCCTTTCATCT----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
>chr3D_1373
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------ATCTGCAACCCGGCAACTCGTCAGTTTGCACCCCTCCCGCAGCTTGATGGCTTCATGCTCCTGGGG
ATGTACCCTCACCCCCCTAC------TGGCGAGTACCGACTACTGCTATACCTGCTCCCCA------------CGGATCT
GGCACCGGAAGCT---------------CACGATGGCTCCTACGTCTTCACATTGGGCTCCGGCCAGCCGCCCAGGCACA
TAGGGTGCCCTGAATCCAAGCAATTGAGACAC------TCCCCTGAGTCTGTCCTGTTCCGTGGTAGCCTGCATTGGTGC
---ATAGGCAAT------------------C------------------TGATGATGGCATTTGACACCATCGCTGAGTC
GTTCCGGCAGGTGCGCTCTCCGGTTGGTCCTGGCTAC------TCTCACCTGATTGAGATGGGTGACATGCTTGGCATCT
CCAGTCATAGT------GACGCAGCAGCAAGCGTTAATATCTGGGTGATGCAGGACTACGAAGGCGAGGTCTGAACCTTC
AAATAC---CGGGTTGAGCTGCTGGTCGCAGAGATCAAGGAGCAATTTGGAAAGTCTGTTGATTATTGGGATGTGGTGGC
CGTGCCTTGGGATGATGAT---GTGCTCCTACTGGTCAAATTTGA---TGACTGTCTGCTTCAGGTTGACATTCTTGGCA
AATTGGTTGCCGGTTTCCATCGCAGAGGCCTTGGCCCTACAAATCTTCGGATCAAGCAAACTCTTGTTCAACATGCCTTC
TTTCCGACACTAGAGGGTTATGTTGTGAATTCTTCGCCTTTCGTCTGAT-------------------------------
-------------AG---TCGATTGTGGTTCTGAACA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
>chr3D_1663
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CA------------------GGATAATGGTATTTGACACCATTGCTGAGTC
ATTCCGGCTGATGTGCTGTCCGATTGTTCCTGGCT------ATGCCGATCTGTTTGAGAAGGGTGGCATCCTTGGCATGT
CCGGTCTTAAT------GATGAAGAGACAAGCGTTGAAATCTGGGTGATGCGGGACTACGAAGGTGAGGTCTGGTCCTTA
AAATAC---CGGGTGGAATTGCCGGTTGCAGAGATCAGGGTGCAATTTGGGAAGTTTGAACATCATTGGGAGGTGGTTGC
CACGTCTTGGGACGATGAT---GTGATTCTGCTGGTCAAATCTGA---TGATTGGCTACTTCAGGTTGATATGAATGGCC
AGTTGGTTACCAGTTTCCATCACAGAGGCCTCGGTCCTACTCGACTTTGGATCAAACAATCTCTAGTTTCACATACCTTC
TTTCCGACACGAAAGGGTTATTTTGCGAGTGCTTAACCTTTCATTTGACCAGACAATTATGTTATGATCATTTATAGCCT
TTCATCCGAGGGCTG---GTGAGTGTGGTGGTGCTTCTTAACAGCCTAGCTTTCCGTATCCACA----------TATTTA
TTAACTAGATCCA--CTATCAGCCCACTAGA-TTT--TTGTTGAAGTAT--AAAAGTTATGATCAAGAAGCTCTAG----
----CTCTTACATGGTTGTGTTACG---------TTTCTTTGAATATCCTTAGTA-CTGAAGTGGCTGCGATGAGTGTTG
ATGCTTACAAGT--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
>chrUn_1676
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------TTCAACACCACCGCAGAGTC
GTTCCGTCAGATGCGCGCTCCAGTTGATCCTTGGGGC------GCTGACCTGTTTGAGATGGATGGAATGCTCGGAATGT
CCATCTACAAT------GATGCGTCGACATCCATTGATATATGGAGAACGCAGGACTATGAAAGCGACGTCTGGGCCTTG
AAATAC---CGGGTTGAATTGCCGGTTGCAGAG------------TTTGGAAACTTTAGCAAACATTGGTGTGTGGTGGT
CGTCTCTTCAGACGGTGAT---GTGCTTGTGCTAGTCAAAGTTGA---TGACCGGCTACTTCAGATTGACGTGGATGGCA
AGCTGGTTGCCAGTTTCCATCGCAGAGGTCTGGGTCCTACTCGACATTGGCTCAAACAAACTCTAGTTTCACATGCATTG
TTTCCGGCACTAGAAGGGTACGTTGTGAACTCTTTACCTTTCCTCTGACCAGATGATTATTTTGTGAACAT---TAGCAT
TTCATCTGAGGGCAG---TTGAGTGTGGTAATGCTGCATAACGGCCTAGCTATCCATATCTACATTAGGTGCAGTACGTA
TTAACTGAATCCG--CTATGAGCCTGCTAGC-TTC--TTTGTTGATGTATAAAAAGTTCTGATCAAGAAGTTTTGA----
----CTGTTACATTGTT---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
>SNPs
SSS-SS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S------------
-----S------------------SSS-SS-------------S--------------------------------S---
-----------------------S------S--------------------SS---------------------S-----
------------------S-----------------------------------------------------S-------
-S-------------------------S-------S-S------------------------------------------
---------------------S--------SSSSSS-----S------------------------S-------------
-------------S-------------S----------------------------------S----S---SS-------
-------------------------S----------------------------------------S-------------
-----------S-----------------S---------------------------------------S--SS------
-----------S----------------S------S------------------------------S--S------S---
----------S----------S----------------------------------------------S-----------
------------S-S-------------S------------------------------S--------------------
S----------------------------S----------------------------------------------S---
-----S----S------------S--------------------------------------------------------
------------------------------------S-------------------------------------------
--------------S-----------SS-------------------------------------------S--------
---------------------------------------------S----------------------------------
----------S--------------------------------------------------------------------S
------S---SSS-SSSS------------------------------------------------------S----S--
-S----S------------S--------------------------------S---------------------------
------S-----------S-------------------S------S-------------------S------SS------
--------S---S--S---S-SSS-----S-----------------S--S-----S-------------S---SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_908
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------CGCGAGAGACGAAGACCTAC----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
>reverse_2611
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------ACTCTGGCCCATGTCTCTGT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
