>input_sequence_60059
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------------------------------------------------------------ATGGCGAGGACTACTCCGGC
GACTGTAGCGGTGTCGGTGGTGCTGTTTGCGGCGGCCGCGGCCCAGCTGGCCAGCGCCGGCATTCCTGACCACTACTGGC
CGGCGCCGTCGGCCCCT---------------TCCACCGGCTTCCCGACGTACGGCTGGGAGAACGCCCACGCCACCTTC
TACGGCTCCGACTCCGGCCTCGGCCACGACTTCGGTACGTGCCCCTCATAGCACACCCGCCTGCACCGTGCATGCACACC
GCGTAGGCACGCTGACTAAGTTCATACGTTTTCCAGAGTCGCGATTTTGTTATTCGATTCTATGACTTTACGATTCAAAG
TAATTTCTATGATTCTATTCTATGATATTGGTTCATA-GAATCTATGTTT-CTACGATCGTGATAGTTAATATTCTATGG
TTTGTGATCATATGTCATCGGACCTTCAATCCGATTCAAAATCGCGATTCTGACAACCTTGCACACACGCATATGCATTG
TGCAGGCGGCGCGTGCGGGTACAGCGGCAGCGACATCGCCTCACTCTACTCGACGAGGACGGCGGCGATGAGCACCCCGC
TGTTCGCCAAAGGGAACGGCTGCGGGCGGTGCTACGAGATCCGGTGCGTGCAGTCCAAGTGGTGCGTGCCGGGGTCGCCC
TCCGTCGTCATCACTGGCACCAACCTCTGCCCGCCCAACTGGTACCAGGCCAGCGACGACGGCGGCTGGTGCAACCCGCC
GCGGAGGCACTTCGACATGGCCCCGCCCTCCTTCTACGAGCTCGCCGGAAGGGCCGCCGGCATCGTGCCCGTCCAGTACC
GCCGCGTGCCGTGCGAGAGGAAGGGCGGCGTCCAGTTCTGCCTCATGGGGAACCCCTACTGGCTGCTCGTCCACATCAAC
AACGTCGGCGGCGGCGGCGACATCGGCCAGATAGCCGTCAGGGAGACGGGCGGGGTGTGGATCCAGATGACGCAGAACTG
GGGGATCACGTTCCAGGCCTTCTTCGAGCTGGACAGGTCCAAGGGGCTCCAATTCATTATCACCGGCGGCACCGACGGCA
AGACCATCGTCGTCGGCGACGCCGTCCCCGCCTGGTGGAGCACCGGCCTCTGCTACCAGGGATCAAACAACTTCTGGTAG
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>chr4A_1_TraesCS4A01G470100
TCCGAGCGATGCGGAAACGGTACTGTAACTGCATCATATGTTTATGATGTCGATCGCCTTGGGTGATATCGTCTTCGGGG
TGTACTCTAGAAACAATGGTGCTTGAGCTGTCATGGTAAAAGTAAAACATTGCGGTGTAATGCTGCATTTCACATGCTGG
TTTAGTTATGTTACTTTCTT---GTTCGTGTAGGCCGTGGTGCTAGTGAGGTGGCTCATATGTTGGCTAAGATAGAGTGA
GACCACTCATATGTTGGTTTATTTGATGTGTTGGCATTGTATCCATGACCTTGTAGACTCTGAATGTTTGTGGAATGAAT
GAGTCAGCCTTGAT-------AAAAAAAAAGA------------------------------------------------
-----------------------------TGAAGGCTACAACATAATGTGGGACCTTATCAACTCCAACAAAAGAAAAGG
AAATAGCCTTTTGGAAACTGGGAAGTCTTGTTTGGAAAATGTTCTAGTGTACATGATGTACACTTTGTACAGCTCAGAAG
GTTGAATGGTTTTGGAAAATGGGA--AGTCTTTTGTGTGGCAGAAAATTAAAAATATTCTTATTTTGGCAAAAAGGCAAA
TCTTCAAGTTCTTTTTTAGATGAAGTCAAACATTTAAATTTCTTTTTGAGGAAAAGTCAAAGATTTAAGTGTTTTTTTGG
GTAAGATTTAAGTGTTTATGATATTCTTTTTATATAAATGATGGTCGACGAAGCCCAGGTTCGTGGGGCTGCACTGGCCA
GTGGGCTTCTTCCGGCCCACGA-CGATGGAACACAAACCAC--CACCACCACCAACGCAGACGTGCGCCCATGAATGCAT
G-----AATTGTGTCGGCCGGCCCGGAGAAAAGAAACCGAGGAAAATCGTGCGCCCAACTCGTTCAGACGGGCGGCAACA
CGGACGTGGCGCCGACCAACTTTGTGCTCCGC-TCTGCTATAAACTTGCATTCGCCTGAGAAGAGTACGCATCGACCAGC
TCCGGCGTACGACATCGATCGACTGGCTAGGAAAGGAAT--CCACCTTGGAGGATCGGCCATGGCGAGGACTACTCCGGC
GACTGTAGCGGTGTCGGTGGTGCTGTTTGCGGCGGCCGCGGCCCAGCTGGCCAGCGCCGGCATTCCTGACCACTACTGGC
CGGCGCCGTCGGCCCCT---------------TCCACCGGCTTCCCGACGTACGGCTGGGAGAACGCCCACGCCACCTTC
TACGGCTCCGACTCCGGCCTCGGCCACGACTTCGGTACGTGCCCCTCATAGCACACCCGCCTGCACCGTGCATGCACACC
GCGTAGGCACGCTGACTAAGTTCATACGTTTTCCAGAGTCGCGATTTTGTTATTCGATTCTATGACTTTACGATTCAAAG
TAATTTCTATGATTCTATTCTATGATATTGGTTCATA-GAATCTATGTTT-CTACGATCGTGATAGTTAATATTCTATGG
TTTGTGATCATATGTCATCGGACCTTCAATCCGATTCAAAATCGCGATTCTGACAACCTTGCACACACGCATATGCATTG
TGCAGGCGGCGCGTGCGGGTACAGCGGCAGCGACATCGCCTCACTCTACTCGACGAGGACGGCGGCGATGAGCACCCCGC
TGTTCGCCAAAGGGAACGGCTGCGGGCGGTGCTACGAGATCCGGTGCGTGCAGTCCAAGTGGTGCGTGCCGGGGTCGCCC
TCCGTCGTCATCACTGGCACCAACCTCTGCCCGCCCAACTGGTACCAGGCCAGCGACGACGGCGGCTGGTGCAACCCGCC
GCGGAGGCACTTCGACATGGCCCCGCCCTCCTTCTACGAGCTCGCCGGAAGGGCCGCCGGCATCGTGCCCGTCCAGTACC
GCCGCGTGCCGTGCGAGAGGAAGGGCGGCGTCCAGTTCTGCCTCATGGGGAACCCCTACTGGCTGCTCGTCCACATCAAC
AACGTCGGCGGCGGCGGCGACATCGGCCAGATAGCCGTCAGGGAGACGGGCGGGGTGTGGATCCAGATGACGCAGAACTG
GGGGATCACGTTCCAGGCCTTCTTCGAGCTGGACAGGTCCAAGGGGCTCCAATTCATTATCACCGGCGGCACCGACGGCA
AGACCATCGTCGTCGGCGACGCCGTCCCCGCCTGGTGGAGCACCGGCCTCTGCTACCAGGGATCAAACAACTTCTGGTAG
TAGACCCGTTCCATCCATGGCCACGATATATACTCGCTCCGTCCGAAAATACTTGTCATCAAAATGATACATATCCTTTT
ATCCATTTTGATGACAAGTATTTTAGGACGGAGGGAATATATTCCTTCCTACATACTTCGATCGATTCACCGTCATCGAT
GCTGTTTGCAAGTGTTTTTGTTTCAGTAATTAATCCCCTCCTTGTGTTCTCGACTTCAGTTTTAATTTGTTCACTGGAGC
TATCTCTGTAATTTTTTGTACAAGACTTAGAGCTTGATTTGTCTCTACCCCATCTTTATGATGCATGCAACACGTACCCT
CAATTAGCCCACAAACAAATTGTGGACGCACTTTGCCATTCAACATGGACCTGTATTTGTTCGTGGAAGTGTCTACCTGC
TTGTTTCAGAAGCAAACCTGCCAAAGTTTCACGGGAGTCCAAACATCCACATGACCAACCAAAACCCACCACATGCTCGT
CTCTACTCCGTACGTGCAAGGTCGCTCCTATTACGGCTTCGGTTGAATGTGTGCGATCGTAACACCGGTTCCGGTTGAGA
CATATATAGCTTCGAGGAGGACTCCGCAACTTGAGCTCCGATCAAGGCCATCCTAGATCCGTCAGGAAAGCCCATCTCAT
GGAGCCGATACAGACGCGGTCATTTGGGGAGGGGGAGGGGGTGTGTTGCTCCTAGCCCGGTTGGCATCTCTAGGTCTGTT
CTAGAACGGCAGCGAATGTTACGCGCCAGAAGACGCAAAAGGTGGAATACAGTGCCGAGGGTATCAAAATGGAGCCTAGG
TTCTACAGACGGTGTACGCATGGACAAATTCGACTGGCATTCCAGACTTGTCGAAATTTAGGGTAAAACCACGGGAGGGG
GTATCACCCCACTTCCATGTGTGGCCTGCGAGAGGTGCCACCCGAGAGTCTCCCGCACAATTTTGCCTCCCACACTATTA
AAAAAAAGGCCTAATGTGAAGCACATTAGAGCATCTCCAG
>chr7A_1
TCCGAGTGACGCAGAAACGGTACTGTAACTGCATCATATGTTTATGATGTGG---------------ATCGCCTTTGGGG
TGTACTCCAGAGACAATGTTGCATGAACTGTCATGGGAAAAGTAAAACATTGCGGTGTAATACTATATTTCCCATGCTGC
TTTAGGTCTGTTTATTACTTTTAGTTCGTGTAAGCTGTGGTGCTAGTGAGGTGTCTTGTATGTTGGCT-AGATAGAGTGA
GATCGCTCATTGTTGGGCTTATTTGATGTGTTGGCATGTTAGCCATGACCTTGTTC-------------GTGGAATGAAT
GAGTCAGCCTTTACACCTACAAAAAAAAAAGAGAATGAGTCAGCCTTTACACCTACAAAAGAAAAAGAGAATGAGTCAGC
CTTTCATAGAAAAAAAAACAAAGAAGAGGTGAAGACTACAACATAATGTGGGAGCATATCAACTCCGACTAA--AAAAAG
AAATATCCTTTTGGAAAATAGAAAGTCTTCTTTGGAAAATGTTCTAGTGTACATCATGCCCAAG---------TCAGAAG
GTCGAATTGTTTCAGAAAATGGAAGTAGTCTTTTGTATGGCAGAAAATTATAAATATTCTTATTTTGGCACAAAGTCAAC
TCTTCAAGTT-TTTCTTAGATGTAGTCAAAC-------------------------------------------------
-----ATTTAAGTGTTTATGAGATTCTTTTTTATATAAA------CGCCGAAGCCCAGGTTCGTGGGGCTGCACCTGCCA
CTGGGCTTCTTCCGGCCCATGAGCGGTGGAACAAAAACCAC--CA------------CAGACGTGCGCCCATGAATGAAT
GAACGAAATTCTGTCGGCCGGCCAGGAGAAAAGAAACTGAAC-AAATCGTGCGCCCAACTCGTTCAGGCAGGCT----CA
TGAACGTGGCGCCAACCAACTTTGTGTTCTGC-CCTACTATAAACTCGCATTCTCCTGCGACGTACGGTCAT----CAAC
TCCGGCGTACGACATCGATCTACG---------AGCAACACCCACCTTCG----ACGAACATGGCGAGGACTCCAGCGAT
CGTCG---------CGGTGGTGCTGATGGCGGCTGCGGCGGCCCAGCTGGCGAGCGCCGGCTTCCCTAACCAGTACTGGC
CGGCGCCGTCGACCCCGAGCCCGAGCGTGCCCTCCACCGGCTTCCCGACGTACGGCTGGGAGAACGCCCACGCCACCTTC
TACGGTTCCGAAAGCGGCCTCGGCCACGACTTCGGTACGTGC-----ATAGCACACCCGCGTGGACCATGCACACCGTAT
AGCTAACTAAG--------------------TCCATAATCGTGATTTTGTTGTACGATTGTACGACATTATCATCCAAAC
TAACGCATATG-----ATTCTACGATTTTAGCTCATA-AAATTTATGTTTTCTATGATCCTAATAGTTAAGATTCTACGA
TTTATGATCAT-GC-CATCAGACCTTCGATCCGATTCAAAATCGTGATTCTGACATCCT----------CATATGCATTG
TGCAGGCGGCGCATGCGGGTACAGCGGCAGCGACATCGCGTCGCTCTACTCGACGAGGACGGCGGCGCTGAGCACGCCGC
TGTTCGCGGACGGCGCCGGGTGCGGGCGGTGCTACGAGATCCGGTGCGTGCAGTCCAAGTGGTGCGTGCCGGGGTCGCCC
TCCGTCGTCATCACCGGCACCAACCTCTGCCCGCCCAACTGGTACCAGGACAGCAACGACGGCGGCTGGTGCAACCCGCC
GCGGAGGCACTTCGACATGGCGCCCCCGTCCTTCTACAAGCTCGCCGCCCGGGTGGCCGGCATCGTGCCCGTCCAGTTCC
GCCGCGTGCCGTGCGAGAGGAGGGGCGGCGTCCAGTTCTGCCTCACGGGGAACCCATACTGGCTGCTGCTCCACGTCAAC
AACGTCGGCGGCGGCGGGGACGTCGCCGAGATGGCCGTCAGGGAGAAGGGCGGGCAGTGGGTCCAGATGACGCAGAACTG
GGGGAGCACGTACCAGGCCTTCGCCGCGCTCGACAAGTCCGTGGGGCTCGAAGTCAGGATCACCGGCGGCACCGACGGCA
AGACCATCATCGTCGGCGACGCCATCCCCGCCTGGTGGAGCCCCGGACTCTGCTACCAGGGATCAAACAACTTCTGGTAG
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>chr7D_654
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----------------------ATTCTTTATATATAAATGTTGGTCGCGGAAGCCCAGGTTCGTGGGGCTGCACCTGCCA
GTGGGCTTCTTCCGGCCCATGAGCGGTCGAACCCAAACCACCACA------------CAGACGTGCGCCCATGAATGGAT
G-----AATTCTGTCGGCCGGCCAGGAGAAAAGAAACGGAAGAAAATCGTGCGCCCAACTCGTTCAGACAGGCGGCTACA
TGAACGTGGCGCCAACCAACTTTGTGCTCTGCGTCTGCTATAAACTCGCATTCTCCTGCGACGTACGGCCAT----CAAC
TCCGGCGTACGACATCGGTCTACT---------AGCAAC--CCACCTTCGACGCACGAACATGGCGAGGACTCCGGCAAT
CGTCG---------CGGTGGTGCTGATGGCGGCGGCGGCGGCCCAGCTGGCCAACGCCGGCTTCCCTAACCAGTACTGGC
CGGCGCCGTCGACCCCT---------------TCCACCGGCTTCCCGACGTACGGCTGGGAGAACGCCCACGCCACCTTC
TACGGCTCCGACTCCGGCCTCGGTCACGACTTCGGTACGCGCCCCTCATAGCACACCCGCGTGCAC----CATGCACACC
GCTA-------------------------TTGTCAGAATCACGAGTCTGTTGTATGATTCTACGATG--------CAAAC
TAACCCCTTTTC---------ACGATTTTAGTTCGTACAAATCTATGTTT-CTACGATCCTGATAGTTAAGATTCTATGA
TTTGTGATCATTGC-CATCCGACCTTCGATCCGATGCAAAATCGCGATTCTGACAGCCTTGCACACACGCATTGTACC--
-GCAGGCGGCGCGTGCGGGTACAGCGGCAGCGACATCGCCTCGCTCTACTCGACGAGGACGGCGGCGCTGAGCACCCCGC
TGTTCGCCAAAGGGGACGGTTGCGGGCGGTGCTACGAGATCCGGTGCGTGCAGTCCAAGTGGTGCGTGCCGGGGTCGCCC
TCCGTCGTCATCACCGGCACCAACCTCTGCCCGCCAAACTGGTACCAGGACAGCAACGACGGCGGCTGGTGCAACCCGCC
GCGCAGGCACTTCGACATGGCGCCGCCCTCCTTCTACAAGCTCGCTGCCAGGGTCGCCGGGATCGTGCCCGTCCAGTTCC
GCCGCGTGCCGTGCGAGAGGAGCGGCGGCGTCCAGTTCTGCCTCATGGGGAACCCCTACTGGCTGCTCGTCCACGTCAAC
AATGTCGGCGGCGGCGGTGACATCGGCCAGATAGCTGTCAGGGAGACAGGCGGGGTGTGGATCCAGATGACGCAGAACTG
GGGGATCACGTTCCAGGCCTTCTTCGAGCTGGACAGGTCCAAGGGGCTCCAATTCATGATCACCGGCGGTACCGACCGCA
AGACCATCGTCGTCGGCGACGCCGTCCCCGCCTGGTGGAGCACCGGCCTCTGCTACCAGGGATCAAACAACTTCTGGTAG
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>SNPs
------S--S--S-------------------------------------S-SSSSSSSSSSSSSSS----S---S----
-------S---S------S---S---S---------S------------------------S--SS-----S-------S
-----S-S----SS--S---------------S--S-----------------S--SS----------S-----------
--S-S-----SSS-S--S-------------------SS--S------------SSSSSSSSSSSSSSS-----------
-----------S-S------------------------------------------------------------------
----------------------------------S------------------S-S----------S--S--SS----S-
-----S-----------S-S-S-------S------------------------S---SS--SSSSSSSSSSS-------
--S----S----SS--------S-------------S-------------S-------------------S----S---S
----------S---S-------S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS----------------S------------------S------S--------------------------SS----
-------------------S-----S-------------------SSSSSSSSSSSS--------------------S--
----------S------------S-------------S--S----------------------------S------S---
S-S----------S---------------S----------------S------S----S--S-SSSSSS---SSSS--S-
--------------------S---SSSSSSSSS--S--S---------S--S-SS--SS-------------S-SS--SS
SSSS-SSSSSSSSS-----------S-S--------S------------------------S-S---S----S-------
-----------S--------------------------------------------------------------------
------------------------------------------------------------S------S------------
--S--SSS-S-SSSSSSSSSSSSSSSSSS--------S-------------S-S--------S---S---SS--S----S
---SSS-----SSSSS------S---S--S--------S--------------------S----------S--------S
-----------SSSS----S-------S---------------------------S------------------------
------------------------------------------S------------------------S------------
--------------S----S------------------------------------------------------------
--------------S----------------------------------S----S-------------------------
---------------------S---------------S---------SS----S-----------------------S--
---------------------S----------------------------------------------------S-----
-----------------S--------------------------------------------------------------
---------------------------------------------------------S----------------------
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_88
--------------------------------------------------------------------TCGTCTTCGGGG
TGTACTCT------------------------------------------------------------------------
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>reverse_1386
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-------------------------ACGTTTTCCAGAGTCGCGAT-----------------------------------
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>forward_848
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----------------------------TGGAACACAAACCACCACCA--------------------------------
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>reverse_2578
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-----------------AATTGTGGACGCACTTTGCC-------------------------------------------
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