>input_sequence_60039
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------ATGGCCGCC
GCCGCCGCGTTGGGTGGCGTGGATGATCTCGACTTCGACTTGGGTTTTATGGACGGG---------------TTCGAGT-
--------------TCGACTTGCTGGACATGGACCTCACCGAGTTCTG---CGGCGGCGACGGCGAGTGCTTGCTGCCCG
CCGTGGCCGATAAGGAGGGCGGTTTCGGTTTGGATCCGGGTTCTCGTGATGGTGGCG------ACGGCGGGAGAGAGAGC
TCGCCGGACTCCGTGGTGACGGACGACGGCGCGCCGCCGTCG------GAGTCGCATGGGGATCGCGACGACGGCGGGAT
GTCGACCTACGCGAGCGAGCTGGAGAGGTTCCTCATGGAGGACGACGATGGCGGGGACGCCGGCGGGCCGCTCGATCTGA
AGGAGCCTGCCGCGGAC---------------------------------------------------------------
------------------G---ACTACTTCTTGGGTGATCTCGACGGCCGTTACGCCGAGCCGGCGACTCCAGGGAAGGA
TCTCGTCCTCGACGACTACTTCTTGGGC---------------------------------------------------G
ATCTCGTCTCGTACGACTACTTCTACGATCTTGCTGCTG---------------------------------------CG
GACGATGCTGCATCACCGGCGACGGAGGAGGAGGATGATTCTGCTCGCGAGGACGACTACTACGAAGCGACCTCGAGGAA
GCGCGCAAGGTACGAATGAATTGAATCGAGTTTTCATTCATTCATTCATTCTGTGCTAATTGCAAGTTTAGATCTTTCAT
CTTCCTGGGCCATGGTAATCGGCAGAAATGGGAAAAACAACCTGTACATAATTGGCAG-----------T----------
-AGATGAAGAAATTTCGTTTTACGAAAAAAATTGATGTAGAAATTGACTCGAATATTGCACTATTATTACC---TGCAGT
TTGATCTTTCTTTTTTTCTGAAAGTGCTTGATCATCTTTGTCATGTGCGCTGCGTATATTGCACTATTATTACTT-----
---------TTCCCCTTTCTTTACATACATGAGAAGGATTATTTGCAACGAATTTCAATTTGATGAAACTTGTTGCTTAT
ATTTCCGGTGCTGCCTCAGGCAGAGGAAGGGCGCCGCTGCGGTGTCACGCGAAGCAGAGCTCCGGGGAGCGCCGGTGATG
CATGGCATCTCGTCGATCTCGACTGGAATCGGGTGCCGGCCCCTTGGTCACCATTGGCTGCATCCCTGCACCACAGTGTG
CCTGTTGGCCTGA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>chr2A_1_TraesCS2A01G487700
CAGCGGTGGCCTATCCCTGCCAGATTTGGGGAAGAAATGAGACGAACATGGCTAGAAGAAATGAAAATGGATAAGGGAAG
GAGAAAGAGGCGTGGCTCACCCTTCATGCTATCCTGTGCGATGGGAACTGGCTGGACCTGGAAAGCGGTGCTTGCGGACG
GGCCCAACCACGTGCACGTTCGGTCGCCTCCTGACCAGGTACCACCTGAGGCCGATGACCGCACGATCTGGGCTGATCGA
GCGGCTCGTGCTCGGCCGCTCGTTTCACCAAGATAGTGTGCGTGCGCTCTGAAGTATTTAGGAATTCTTAATCATAGGAG
TTACTTTATAATCTTGAATCTTAAGTCCAGATCAGTGTACCTGTAATTGTTATGAAGTATCAATAAAATTACAGGTGTTT
CAAAAAAACATATGTGTGGTTCCTAAAAATAATAATATGTGCACACTTTATCTTAATAAAGAAAAAACGTATGTGCACAC
TCCACCGACCAATTTTATAGTTTTTC-----AAAGATAGCAACAGACGTCGCAATCTGCGTTCTCAAAAAGTTCGAATTC
GTACCTCCCCGCGGGACCGCGTCTCGTAGGAAATCCAGAAACCTCCGGAGAAACACGCAAGC----ACGCATCTCGACCG
ATCGGCACCGTCGACGCACCAGATCAAATCAATCCACACCGCTCATCACTTGGCCACCGCCA--------C---GAGAAG
AGTCAAACTCCCCACGTCGCGCTTTCCCGTTCCGATCGGGA-----------CGTGCGTGCGTACGTCGGTTCCTCCCGC
AGCGGCCGGAAGGAAAGGAAACTTCCCGGATACGCCGCCCGGGGCCCGGCCGAACCTTGCGCGGTAAGGAACCGACTCCG
GCCACGTCTCCCCCGTCTCCGTCCCGCCCCCATATAAAATCCCCCCTCCCCTGGTCGACGTCCTCACAATCTTCTGATTT
CAAAAACTTCCGGGCGCGCGTTGGCCGGCTCATCGATCGAACCTTCGTCGACGTGCGTACGTACTCGCGCCATGGCCGCC
GCCGCCGCGTTGGGTGGCGTGGATGATCTCGACTTCGACTTGGGTTTTATGGACGGG---------------TTCGAGT-
--------------TCGACTTGCTGGACATGGACCTCACCGAGTTCTG---CGGCGGCGACGGCGAGTGCTTGCTGCCCG
CCGTGGCCGATAAGGAGGGCGGTTTCGGTTTGGATCCGGGTTCTCGTGATGGTGGCG------ACGGCGGGAGAGAGAGC
TCGCCGGACTCCGTGGTGACGGACGACGGCGCGCCGCCGTCG------GAGTCGCATGGGGATCGCGACGACGGCGGGAT
GTCGACCTACGCGAGCGAGCTGGAGAGGTTCCTCATGGAGGACGACGATGGCGGGGACGCCGGCGGGCCGCTCGATCTGA
AGGAGCCTGCCGCGGAC---------------------------------------------------------------
------------------G---ACTACTTCTTGGGTGATCTCGACGGCCGTTACGCCGAGCCGGCGACTCCAGGGAAGGA
TCTCGTCCTCGACGACTACTTCTTGGGC---------------------------------------------------G
ATCTCGTCTCGTACGACTACTTCTACGATCTTGCTGCTG---------------------------------------CG
GACGATGCTGCATCACCGGCGACGGAGGAGGAGGATGATTCTGCTCGCGAGGACGACTACTACGAAGCGACCTCGAGGAA
GCGCGCAAGGTACGAATGAATTGAATCGAGTTTTCATTCATTCATTCATTCTGTGCTAATTGCAAGTTTAGATCTTTCAT
CTTCCTGGGCCATGGTAATCGGCAGAAATGGGAAAAACAACCTGTACATAATTGGCAG-----------T----------
-AGATGAAGAAATTTCGTTTTACGAAAAAAATTGATGTAGAAATTGACTCGAATATTGCACTATTATTACC---TGCAGT
TTGATCTTTCTTTTTTTCTGAAAGTGCTTGATCATCTTTGTCATGTGCGCTGCGTATATTGCACTATTATTACTT-----
---------TTCCCCTTTCTTTACATACATGAGAAGGATTATTTGCAACGAATTTCAATTTGATGAAACTTGTTGCTTAT
ATTTCCGGTGCTGCCTCAGGCAGAGGAAGGGCGCCGCTGCGGTGTCACGCGAAGCAGAGCTCCGGGGAGCGCCGGTGATG
CATGGCATCTCGTCGATCTCGACTGGAATCGGGTGCCGGCCCCTTGGTCACCATTGGCTGCATCCCTGCACCACAGTGTG
CCTGTTGGCCTGATCGATC-ATCGATCAACCTGCAGTTACGGTCCGTCTGGGAGAAAG---------GCGCCTGCCTCAG
GTATTCGAACCGGTAGGTGAAAATTTCAGAGGAACACCTGC------ATTTCCCTGTGTT-CTTCTATGATATTTTCTGC
CTTACGCACCAACCCTGCCATTGGACGAC--TA--AAGTCATGGGAGATGGGACGAACCAGGGACTCGGCACAGACTCCT
CTGTTCGGAGTAGAAAATTTTGGTAGCAACTCTCGAACAACACGTTTTCAAAAGGAAAAGAAAGCTC-GTTTTCTAATGC
GCTAGTACACCTAATACTCCCCTTCTCGT--ACACACACATCCTGTACACGTTCCGTATACCGGTAGCACAATTCGTTGA
CTATCTGCCTAATACAGGACCCATCTCATACACATTTCGTATACCGGTAGCATTCCGTATGCCTAATGCTTGATACTTAG
TTTCTACCACTACCAGTAAAGAGCTTGGTGGTTGATGTACGTTTGAAGTACAAGAAGAAACCTTTTACTAGGTAGAGAAT
GTTAAATTTTTGTTCTCGACCGTCCAGAATTTTTTTTCTCTGAAAATCCAGTGAGCACCACCAATCGTCCAGGCTTGTGC
TTATTCAGTGTGGGCCGCATATAATCTTAATCGTCCAGGCTTGTGCTTATCGGTTGTTGTAGGTTTAGAAGTACAAGAAA
CCTTTTTTGTTTCTACGCATCATCGTCAAGCCTTTTTTTAGCACCTTCAACCGTCCAGGCTTGTGTTTGTTCAGTGCGGG
CAGCATATAATCTTGCTCATGCTGTTCGTTCTTTGGGTAGAGAGAAGCTTCAATGGTTGTGGCCCTTGTGGCCCTGTGCA
GTCCATCCATGAAAAAAACTGGAAGCGACTGTGGTCTGATCTATGTCAGACTTGAGGAACCACTGGTGCTCAGCTGCAGC
AACGAGCGTTTTTTCCCTCTAGTTACGAAGGCTGCGTCGTGATGAACTAGTGGAACACAGTTTCCTGTATTGTCAGT
>chr2D_436
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------TATGTGCACACTCGTTACTCAAAAAAAGAAAAAGTATGTGCACAC
TCCACCTAACAATTTTAGATT------TTCAAAAGATAGCAACACACGTCGCAATCTGCGTTCTCATAAAATTCGAATTC
GTATCCCCCCGCGGTACCGCGAGACGTAGGAAATCCAGAAACCTCCATAGAAACACGCAAGC----ACGCATCTCGATCG
ATCGGCACCGTCGACGCACCAGACTCAATCAATCCACACCGCTCACGAGTCCACCACATCCAAACCGCCATGATGAGAAG
AGTCAAT-TCCCCACGTCACGCTTTCCCCTCTCGATCGGGA-----------CGTGCGTG----CGTCGGTTCCTCCCGC
AGCGGCCGGAAGGAAA-----CTTCCCGGATACGGCGCCCGCGGCCCGGCCGAACCTTCCGCGGTAAGGAACCGACTCGG
GCCACGTCTCCTCCGTCCC--TCCCGCTCCCATATAAAC-CACCCCTCCCCTGGTCGACGTCCTCACAATCT---GATTT
CAAAAA------------------------------------CTTCGTCGACGTGCGTGCGTACTTGCGCCATGGACGCC
GT---CGTGTTGGGTGACGTTGATGATCTCGACTTCGACTTGGGTTTTATGGACGGG---------------TTCGAGT-
--------------TCGACCTGCTGGACATGGACCTCACCGAGTTCTG---CCACGGCGACGGCGAGTGCTTGCTGCCTG
CCGTGGCCGATAAGGATGGCGGTTTGGGTTTGGATTTAGGTTCTGATGACGGTGGCG------AAGGGGGGAGGGAGAGC
TCGCCGGACTCCGTGGTGACGGACGACGGCGCGCCGCCTCTGTCGTTAGAGCCGTCTGGGGATCGCGACGATGGCGAGAT
GTCGGCCTACGTGGGCGACCTGGAGAGGTTCCTCATGGAGAGCGAGGATGACGCGGAGGCCGGCGGGCCGTTCGCGGCCA
AGGGGCTTGCCGCCAACGACCACTTGTTCGACGATCTCGCTGTTGCGGACGGCGGTTACGTCCAGCCGTCGACTGCAGCG
GAGGAGTTTGCCGCCGCGG---ACTACTTCTTGGGTGATCTCGACGACGGTTACGCTGAGCCGGCGACTCCAGGGAAGGA
TCTCGTCCTCGACGACTACTTCTTCGGC---------------------------------------------------G
ATCTCGTCTCGTACGACTACTTATACGATCCTGCTGTTGCGAGCGATGGCTGCGTCGAGCCCGCGGCCGTTGCCAGCGTG
GACGATGCTGCATCATCGGCGACGGAGGAGGAGGATGCTGGCGAGTACT---ACGACGACGACGAAGCGACCTCGAGGAA
GCGCGCAAGGTATGAATGAATTGAATCTAGTTTTCATTCATTCATTC----TGTGCTAATTGCAAGTTTAGATCTTTTAT
CTTCCTAGGCCCTGGTAATCGGCAGAAATGGAACAAACAACCTGTACATAATTGGCAGTTAGTATTAGCT----------
-AGGTGAAGAAATTTCGTTTCACGAAAAA-ATTGATGTAGAAATTAACTCGAATATTGCACTATTATTACTACTTGCAGT
TTGATCTTTC--TTTTTCTGAAAGTGCTTGATCATCTTTGTCATGTGCGCTGCGTATATTGCACTATTATTACTTGCAGT
TTACTCTGTTTCCCCTTTCTTTACATACATGAGAGGGATTATTTGCAACGAATTTCAATTTGATGAAACTTGTTGCTGAT
ATTTCCGGTGCTGCCTCAGGCAGAGGAAGGGCGGCGCTGCGGTGCCACGCGAAGCAGAGCTCCGGGAAACGCCGGTGATG
CATGCCATCTGGTCGATCTCGACTGGAAACGGGTGCCGCCCCCTTGGTCACCATTGGCTGCATCCCTGCACCACAGTGTG
CCTGTTGGCCTGATCGATCGATGGATCAACCTGCAGTTACGGCCCGTCTGGGAGAAAGATCGCGACGGCGCCTGCCTCAG
GTATTCGAACCGGTAGGTGAAAAATTCAGAGGAA------C------ATTTCCCCGTGTT-CTTCTATGATATTTTCTGC
CTTTCACACCAACCCGGCCATTGGACGATTATATAAAGTCATGGGACGAACTATAAACAA---------CACATACTCCT
CTGTTCGGAGTAGAAAATTTTGGTAGCAACTCTCGAACAACACGTTTACAAAAAGAAAAGAAAGCTTAGTTTTATAATGT
ACGAGTACACCTAATATTCCTCTTCTTGT--ACACATACATCCCGTGCGCATTCCGGAT---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>chr2B_467
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------ACGTGTATGCACAC
TCCGCCTACCAATTTT-TAGTTTTTCATTCGAAAGATAGCAACACACGTCGCAATCTACGTTCTCATAAAATTCGGATTC
GTACCTACCCGCACTACCGCGTCACGTAGGAAATCCAGAAACCTCCAGAGAAACTCCCCATC----ACGCATCTCGATCG
ATCGGCACCGTCGATGCACCAGATCAAATCAATCCACACCGCTCACCAGTTAGCCACACCCAAACCGCCTCTGCATGC--
-GTCGGT-TCCCCACGTCGCGCTCTCCCCTCCCGATCGGGA-----------CGTGCGTG----CGTCGGTTCCTCCCGC
GGAA---GGAACGAAA-----CTTCGAAGACAGC---------GCCCGGCCGAACCTTCCGCGGTAAGGAACCGACTCCG
GCCACGTCTCCTCCGTCCC--GCCCGCTCCCATATAAAC-CCCCCCTCCCCTGGTCGACGTCCTCACAATCT---GATTT
CAAAATCTTCCGGGCGCGCGTTGCCTGCCTCATCGATCGAACCTCCGTCGACGTGCGTACGCACTCGCGCCATGGCCGCC
GC---CGCGCTGGGTGACGTTGATGACCTCGACTTTGACCTGGGTTTTATGGACGGG---------------CTCGAGTG
CCTCGACTTCGAGTTCGACCTGCCAGACATGGGCCTCACCGAGTTGTGCCACGGCGGCGACGGCGAGTGCTTGCTGCCCT
CCGTGGCCGATAAGGAGGGCGGTTTGGTTTTGGATCTGGGTTCTCATGATGGTGATGGTGCCCAAGGGGGGAGGGAGAGC
TCGCCGGACTCCGTGTTGACGGACGACGGCGCGCCGCCGTCG------GAGTCGGCCGGGTATCGCGAGGTCGGCGAGAT
GTCGACATACGCAACCGAGCTGGAGAGGTTCCTCATGGAGGACGAGGATAACGGGGACGCCGGCGGGCCGCTCCATCCGA
AGGAGCTTGCCGCCGAC---------------------------------------------------------------
------------------G---ACTACTTCTTGGGTGATCTCGACGACCGTTACATCGAGCCGGCGACTCCAGGGAAGGA
TCTCGTCCTCGACGACGACTACTTCGGC---------------------------------------------------G
ATCTCGTCTCGTACGACTACTTCTACGATCTTGCTGTTGCGGGCGACGGCTGCGTCGAGCCCGCGGCCGGTGCCAGCGTG
GACGCTGCTGCATCACCGGCGACGGAGGAGGAGGATGCTGGCGAG---------GACGACGACGAAGCGACCTCGAGGAA
GCGTGCAAGGTACGAATGAATTGAATCGAGTTTTCATTCATTCATTC----TGTGCTAATTGCAAATTTAGATCTTTTAT
CTTCCTGCGCCATGGTAATCGGCAGAAATGGAAGAAACAACCTGTACATAATTGGCAGTTAGTGTAAGCT----------
-AGATGAAGAAATTTCGTTTCACGAAAAA-ATTGATGTAGAAATTAACTCGAATATTGCACTATTATTACTTG---CAGT
TTGATTTTGA--TTTTTCTGAAAGTGCTTGATCATCTTTGTCATTTGCGCTGCGTATATTGCACTATTATTACTTGCAGT
TTACTCTGTTTCCCCTTTCTTTAC--ACATGAGAAGGATTATTTGCAACGAATTTCAATTTGATGAAACTTGTTGCTGAT
ATTTCCGGTGCTGCCTCAGGCAGAGGAAGGGCGCCGCTGCGGTGCCACGCGAAGCAGAGCTCCGGGAAACGCCGGTGATG
CATGCCATCTCGTCGATCTCGACTGGAAACGGGTGCCGCCCCCTTGGTTACCATTGGCTGCATCCCTGCACCACAGTGTG
CCTGCTGGCCTGATCGATC-ATCGATCAACCTGTTCTGGGAGAAAGATCG---GAACG---------GCGCCTGGCTCAG
GTATTCGAACCGGTAGGTGAAAATTTCAGAGGAA------CACCTGCATTTCCCCATGTTCCTTCTATGATATTTTCTGC
CTTTCACACCAACCCTGCCATTGGACAATTATA--AAGTCACGGGACGAATTAACC-------------CACATACTCCT
CTCTTCGGAGTAGAAAATTCTGGTGGCAACTCTCGAACAACACGTTTTCAAAAACAAAAAAAATCTC-GTTTTCTAATGT
ACGAGTGCACCTAATACTGCTCTTCTCGTACACACACACATCCCGTACACATTCC-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>chr2B_541
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------AAAAAGTTGGAACTC
GTGCCTCTCCGCGGTACCGCGTCACGTAGGAAATCCAGAAACCCCCAGAGGAACACGCAAGTACGTACGCATCTCGATCG
ATCGGCACCGTCGACGCACCAGATCAAATCAATCTACACCGCCCACCACTTAACCCCATCCAAACCGCCAC---GAGAAG
AGTCAAT-TCCCCACGGCGCGCTCTCCCCTCCTCGTAGCTGATCGGGACGTGCGTGCGTG----CGTCGGTTCCTCCCGC
AGCGGCCGGAAGGAAAGGAAACTTCCCGGATACGGCGCCCGTGGCCCGGCCGAACCTTCCGCGGTAAGGAACCGACTCCG
GCCACGTCTCCTCCGTCCC--GCCCGCTCCCATATAAAG-CCCACCTCCCCTGGTCGACGTCCTCACAATAT---GATTT
CAAAAAACTCCCATCGA--------------------------------------CGTGCGAACTCGCGCCATGGCCGCC
GC---CGCGTTGGGTGACGTTGATGATCTCGACTTCGACCTGGGTTTTATCGACGGGCTCGAGTGCTTCGACTTCGAGT-
--------------TCGACCTGCCGGACATGGGCCTCACCGAGTTGTGCCACGGCGGCGACGGCGAGTGCTTGCTGCCCG
CCGTGGCCGATAAGGAGGGCGGTTTGGGTTTGGATCTGGGTTCTCGTGATGGTGGCG------ACGGCGGGAGAGAGAGC
TCGCCGGACTCCGTGGTGACGGACGACGGCGCGCCGCCTCTGTCGTTAGAGTCGTCTGGGGATCGCGACGATGGCGAGAT
GTCGGCCTACGTGGGCGACCTGGAGAGGTTCCTCATGGAGAGCGAGGATGACGCCGAGGCCGGCGGGCCGTTCGCGGCCA
AGGGGCTTGCCGCCAACGACCACTTGTTCGACGATCTCGCTGTTGCGGACGACGGTTACGTCGAGCCGTCCACTGCAGCG
GAAGAGTTTGCCGCCGCCGGCTACTACTACTTCGGTGATCTCGACGACGGTTACGCGGAGCCGGCGACTCCAGGGAAGGA
TCTCGTCCTCGACGACTACTTGTTCGGCGATCCCGTTGTTGCGGGCGACGGTTACATCGAGCCGTACACTGCAGGGGAGG
ATCTGGTCTCCGACGACTACTTCTACGATGTTGCTGCTG---------------------------------------TG
GACGATGCTGCTC---------------------------GCGAG---------GACGACGACGAAGCGACCTCGAGGAA
GCGTGCAAGGTACGAATGAATTGAATCGAGTTTTCATTCATTCATTCATTCCGTGCTAATTGCAAATTTAGATCTTTTAT
CTTCCTGGGCCATCGTAATTGGCAGAAATGGAACAAACAACATGTACATAATTGGCAG-----------T----------
-AGATGAAGAAATTTCGTTTTACGAAAAA-ATTGATGTAGAAATTAACTCAAATATTGCACTATTATTACTTG--GCAGT
TTGATCTTTC-TTTTTTCTGAAAGTGCTTGATCATCTTTGTCATGTGCGCTGCGTATATTGCACTATTATTACTTGCAGT
TTACTCTGTTTCCCCTTTCTT----TACATGAGAAGGATTATTTGCAACGAATTTCAATTTGATGAAACTTGTTGCTGAT
ATTTCCGGTGCTGCCTCAGGCAGAGGAAGGGCGCCGCTGCGGTGCCACGTGAAGCAGAGCTCCGGGGAACGCCGGTGATG
CATGCCATCTCGTCGATCTCGACTGGAAACGGGTGCCGCCCCATTGGTCACCATTGGCTGCATCCCTGCGCCACAGTGTG
CCTATTGGCCTGATCAATC-ATCGATCAACCTGCAGTTCCGGTCGGTCTGGGAGAAAGATCGCGACGGCGCATGCCTCAG
GTATTCGAACCGGTAGGTGAAAATTTCAGAGGAA------C------ATTTCCGCGTGTT-CTTCTATGATATTTTCTGC
CTTTCACACCAACCCGGCCATTGGACGATTATA--AAGTCATGGGACGAACTATAAACAA---------CACATACTCCT
CTGTTCGGAGTAGAAAAGTTTGGTAGCAACTCTCGAACAACACGTTTTCAAAAAGAAAAGTAAGCTTAGTTTTATAATGT
AC------ACCTAATATTCCTCTTCTTGT--ACACATACATCCCGTGCGCATTCCGGATGTTGGTAGCATAATTCGTTGA
GTATCTGCCTGGTACAGCCATTTCATCACCAGTGCTAATCAACCATGCAAACATGTTTGATCCTTAG----------TAG
TTTCTACCACTACCAGTAAAGAGCTTAGTGGTTGATATACATTTAGAAGTAC--AAGAAACCTTCTACCAGGTAGAGCAT
GTCAGATTTTTGTTCTCGACCGTCCAGAATTTTTTTTCTCTGAAAATCGAGTGAGCACCACAAATCGTCCAGGCTTGCGT
TCATTCAGTATGGGCCGCTTATAATCTTGCTCGT----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>chr2D_591
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------CAGAAACCTCCATAGAAACACGCAAGC----ACGCATCTCGATCG
ATCGGCACCGTCGACGCACCAGACTCAATCAATCCACACCGCTCACGAGTCCACCACATCCAAACCGCCATGATGAGAAG
AGTCAAT-TCCCCACGTCACGCTTTCCCCTCTCGATCGGGA-----------CGTGCGTG----CGTCGGTTCCTCCCGC
AGCGGCCGGAAGA-----AAACATCCCGGATACGGCGCCCGCGGCCCGGCCGAACCTTCCGCGGTAAGGAACCGACTCGG
GCCACGTCTCCTCCGTCCC--TCCCGCTCCCATATAAAA-CCCCCCTCCCCTGGTCGACGTCCTCACAATCT---GATTT
CAAAAACTTCCAGGCGCGCG----CCGGCTCATCGATCGAACCTTCGTCGACGTGCGTACGTACTTGCGCCATGGACGCC
GT---CGTGTTGGGTGACGTTGATGATCTCGACTTCGACTTGGGTTTTATGGACGGG---------------TTCGAGT-
--------------TCGACCTGCTGGACATGGACCTCACCGAGTTCTG---CCACGGCGACGGCGAGTGCTTGCTGCCTG
CCGTGGCCGATAAGGATGGCGGTTTGGGTTTGGATTTAGGTTCTGATGACGGTGGCG------AAGGGGGGAGGGAGAGC
TCGCCGGACTCCGTGGTGACGGACGACGGCGCGCCGCCTCTGTCGTTAGAGCCGTCTGGGGATCGCGACGATGGCGAGAT
GTCGGCCTACGTGGGCGACCTGGAGAGGTTCCTCATGGAGAGCGAGGATGACGCGGAGGCCGGCGGGCCGTTCGCGGCCA
AGGGGCTTGCCGCCAACGACCACTTGTTCGACGATCTCGCTGTTGCGGACGGCGGTTACGTCCAGCCGTCGACTGCAGCG
GAGGAGTTTGCCGCCGCGG---ACTACTTCTTGGGTGATCTCGACGACGGTTACGCTGAGCCGGCGACTCCAGGGAAGGA
TCTCGTCCTCGACGACTACTTCTTCGGC---------------------------------------------------G
ATCTCGTCTCGTACGACTACTTATACGATCCTGCTGTTGGGAGCGATGGCTGCGTCGAGCCCGCGGCCGTTGCCAGCGTG
GACGATGCTGCATCATCGGCGACGGAGGAGGAGGATGCTGGCGAGTACT---ACGACGACGACGAAGCGACCTCGAGGAA
GCGCGCAAGGTATGAATGAATTGAATCGAGTTTTCATTCATTCATTC----TGTGCTAATTGCAAGTTTAGATCTTTTAT
CTTCCTGGGCCCTGGTAATCGGCAGAAATGGAACAAACAACCTGTACATAATTGGCAG-----------TTAGTATTAGC
TAGGTGAAGAAATTTCGTTTCACGAAAAA-ATTGATGTAGAAATTAACTCGAATATTGCACTATTATTACTACTTGCAGT
TTGATCTTTC--TTTTTCTGAAAGTGCTTGATCATCTTTGTCATGTGCGCTGCGTATATTGCACTATTATTACTTGCAGT
TTACTCTGTTTCCCCTTTCTTTACATACATGAGAGGGATTATTTGCAACGAATTTCAATTTGATGAAACTTGTTGCTGAT
ATTTCCGGTGCTGCCTCGGGCAGAGGAAGGGCGGCGCTGCGGTGCCACGCGAAGCAGAGCTCCGGGAAACGCCGGTGATG
CATGCCATCTGGTCGATCTCGACTGGAAACGGGTGCCGCCCCCTTGGTCACCATTGGCTGCATCCCTGCACCACAGTGTG
CCTGTTGGCCTGATCGATCGATGGATCAACCTGCAGTTACGGTCCGTCTGGGAGAAAGATGGCGACGGCGCCTGCCTCAG
GTATTCGAACCGGTAGGTGAAAAATTCAGAGGAA------C------ATTTCCCCGTGTT-CTTCTATGATATTTTCTGC
CTTTCACACCAACCCGGCCATTGGACGATTATA--AAGTCATGGGACGAACTATAAACAA---------CACATACTCCT
CTGTTCGGAGTAGAAAATTTTGGTAGCAACTCTCGAACAACACGTTTACAAAAAGAAAAGAAAGCTTAGTTTTATAATGT
ACGAGTACACCTAATATTCCTCTTCTTGT--ACACATACATCCCGTGCGCATTCCGGAT---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------SSS-SS-S-S---S-S-----------------
------S-------------------------------------S-----------------------------------
--------------S--------S----------------------S------------------------------S--
---------------------------------------------S-----S-----SS---------------------
------SS--------------------S-S-----------------------------SSSS----------------
----------------------------------S------S----------------S---------------------
-----------S-----S-SS------S-----------S--------------------------------SSS-----
-----------------------S--------------------------------------------------------
--SSS-----------S---S-----------------------------------------------------------
-------------------S------------------------------------------------------------
-------------------------S----------S-------------------------------------------
------------------------------------------------------SS--------------------S---
---------------------------------------------S----S--------------------------S--
------S------S------------------------------------------------------------------
----------------------------------------------S---------------------------------
------------------------S-------------------------------------------------------
------------------------------------------------------------------------------S-
-------------------------------------S-SSS-SSSS-SSSS-----S--S-------------------
-----------------------------------------------------------------------------S--
-------------------------------S-S----------------------------------------------
-----------------------------S---------------S------------------------S---------
----------S---------------------------------------------------------------------
-----------------------------------------------------------------------------S--
--------------------------------------------S-----------------------S-----------
----S-----------------------S---------S-----------------------------------------
--------------------------------------------------------------------------------
----------------------------------SSSSSS--------------S-------------------------
---S-S----------------------S-----------------SSSSSS-SS---S-SSSSSSSSS----S------
-----------------------------------------------------S-------------------------S
S-S-----------------S----------------------S------S-----S--SSS-------S----------
S---------SS-----SSSSSSSS---SSSSSSS-SSSS-SS-SS-S-SSSS-SSS-SSS---S-SSSSSSSSSSS---
--------------------------S---------S---S---SS-SSSSSSS----------S---S--------S--
--S-S-------------------------------------------S------------S---------------S-S
-S-------S--------S---------SS----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_125
--------------------------------------------------------------------------------
-------------------------ATGCTATCCTGTGCGATGGG-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>reverse_1140
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------TTGCTGGACATGGACCTCAC-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>forward_127
--------------------------------------------------------------------------------
---------------------------GCTATCCTGTGCGATGGGAA---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>reverse_1804
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------CTCGCGAGGACGACTACTAC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>forward_1411
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------CTCATGGAGGACGACGATGG-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>reverse_3332
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---------------------------------------------------TTGAGGAACCACTGGTGCTC---------
-----------------------------------------------------------------------------
