>input_sequence_60020
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----------------------------------------ATGGGGAAGAAGGCCGCCGCCGTGATCTGCGGGACGGCGA
GCTTACTCGGCCTCCTCGCGGCCATCCTAGGATTCGTCGGCGAGGGCACCAAGTCCCAGGTAGGCATGATAATTAGCTTT
GCTTTGCTAGCTCCAGTATGCAGTAGGACAGGTGCCGCGGATCACGAACAGAGCTGACACAGTAGTGCTCGTGCTGTCGT
GCAGTCGTTTGCTGGGTTCGACGGGGTGCACTGCGTGTACCGGAGCACGGCGGCGCGGGGTTGCGGCGTCACGGCCACGC
TGTTCCTCCTGGCGGCGCAGGTCCTCCTCGCCGCCGCCACCGGCTGCTCCGGCTGTTGCCGGCCAGAGACGCGGAAGATC
CCGTCCGAGACCAAGCGCGTCTTCGCCGTCGCCATGTACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTTTCTCT
CTCGTGTCTAACGTGTAGTGTGCACGCATGTGCTGTGCGAACGAAGGATCCTGATGTTCATCGCGGCGGTGCTGTTTTAC
ATCGGCGCGATCTGGAACACGGCCGGGAAGCGGAAGCCGGCGGAAGGGACCAGCGCCGGCGAGGACTGCTACGTGCTGCA
AACTGGGGTGTTCGCCACCGCGTCCGCGCTGTCCCTCATCGTCGTCGGCTTCGGCATCGGCTCCTACTTCCTGCTCGGAG
CGTCGGCGCCGCCACGGGAGCAGCAGCCGGAGATCGCCCTGGGGCAGCCGCCGCCCTACTTCCAGG------CGCAGCCC
CAGCCCCACGGCGGCTATCCGGCCGGTGCCACCTGGCAGACACGCGTATGA-----------------------------
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>chr6A_1_TraesCS6A01G104100
TAGGATTGTTGTTCTGTTGGAACAAACAAACCCACCTAGGACTGTTGTTCTATTGGAATAGTCATCTTACATATATGTGT
TTCGCAAACATTAACAAGCATTGTCCGAGAGCGACAAATAAACGATTGTTGGCTTGGATAATCCTCAAGACCAAACGAGC
TCCCTCGCAGTTGCCCCCGCTTCTTGGGGGAGGCAACGATCCTATCAGGGGACGTGAGTGGGGCCATCCACGTGACGACG
GTCTGCCACGCTAGCTCTCTCACCTGGTGAGGCCTGCACACGTCGTAGTTTTTCTCTTTTAGCTATTTCCTGCAAATATA
TGTGAAAAGGTACAAAATTCAAAACCTCAAAATTTCTGAATTTTTTAAATTCCAAATGTTTCTAAACAAGAGGGACGTAA
GTAAGTTCTAAAATTGCCAGAACCGAAAGTTATCAACAACCAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTTGCCCGCCGCCCATCCGC
CATGACCCCTCGAGACAGGCCATATATGCCCTCTAACATCCTCTCGATCTCACCTTGTTAAGTTCAAATTAATCAATCTG
ACAAGTGACAAACACATAGTGATGACCACCATATTTTGTACGTACGTACCCACACCTTCAGCCATATAGCTGAGAATACA
AAGACCAGACAAGCTAAGCTTCTTAGAATTGTCGAACCAATCACAAATTATATTCGCTTATTCGACGCTGGTAGTTTGTT
TGTGTATGTAGTTATATATATATACATACCCTAGCTGTACATCACGCATTTTAGACTGTTCTTAGTGCGTGCCGATTGAG
CATTTCCGGCCAGTGTCGATCGATAGAGTAGCTGCCGGCCATGGGGAAGAAGGCCGCCGCCGTGATCTGCGGGACGGCGA
GCTTACTCGGCCTCCTCGCGGCCATCCTAGGATTCGTCGGCGAGGGCACCAAGTCCCAGGTAGGCATGATAATTAGCTTT
GCTTTGCTAGCTCCAGTATGCAGTAGGACAGGTGCCGCGGATCACGAACAGAGCTGACACAGTAGTGCTCGTGCTGTCGT
GCAGTCGTTTGCTGGGTTCGACGGGGTGCACTGCGTGTACCGGAGCACGGCGGCGCGGGGTTGCGGCGTCACGGCCACGC
TGTTCCTCCTGGCGGCGCAGGTCCTCCTCGCCGCCGCCACCGGCTGCTCCGGCTGTTGCCGGCCAGAGACGCGGAAGATC
CCGTCCGAGACCAAGCGCGTCTTCGCCGTCGCCATGTACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTTTCTCT
CTCGTGTCTAACGTGTAGTGTGCACGCATGTGCTGTGCGAACGAAGGATCCTGATGTTCATCGCGGCGGTGCTGTTTTAC
ATCGGCGCGATCTGGAACACGGCCGGGAAGCGGAAGCCGGCGGAAGGGACCAGCGCCGGCGAGGACTGCTACGTGCTGCA
AACTGGGGTGTTCGCCACCGCGTCCGCGCTGTCCCTCATCGTCGTCGGCTTCGGCATCGGCTCCTACTTCCTGCTCGGAG
CGTCGGCGCCGCCACGGGAGCAGCAGCCGGAGATCGCCCTGGGGCAGCCGCCGCCCTACTTCCAGG------CGCAGCCC
CAGCCCCACGGCGGCTATCCGGCCGGTGCCACCTGGCAGACACGCGTATGAACCAAGCTCTTCCTCGGCCTTGGAATTTT
CAGAATTGCTAATGCAGATCACACG-------------------------------------------------------
-----------------------------------------------------------------------AGAATTTGT
AAAGTTTTAATGGACCGTCTCATATATATCAGCAAGATCAATCGAGCCATGTATAGGAAACCAAAAGAGGATTTCGCTGA
ATCTTTTCTGAAAACTGTTATAGGTA------ATATAGGAATTTTCAGTGGAATCAGCTTCCTGTTGGAGGTGGCA-TTC
CGGCGGGAGTCAAATGTGATTTATTTTCTGTTAGTTTAGTGATCAAGAACAAACCAACATATTTGGTGTCTAGAATTATA
C-------------------------------------------------------------------------------
-------------TAGTCGTTTATGGTTTACCCTATGAGAAGGGCAAGCAAGACTTT----ATATATGAGCCGCACGGAC
TTCTTGTTCATGGGCAATCTCCAGTCGTTGTTGAAGGGGATTTCAACTTATAACAGGTAATAGGAATTTTCAGTGGAACC
ACCTTCCTGTTGAAGGTGGCAACTATGTGACACAAAATAATCTGACTCGCGATATCTAGTAAGTCAGTGACAGAGTGGTA
GACACATAAACACTACTATAATGCATAACAGTTTATGAGTTTAATCACAACAAATGTAAAATTTCACTACTTTTTAGAGT
TTGATGTTAGATA-AATGACACATATAGCTAGACTTTCTTAAATATGCTAACATCAATATATTTTTTTAGATAAGAGGCA
TTGGCCCGACTTTATAAATAAAGCCACACGGCAGCGTCACAGACCCGAACACCCAAACAGATAACAAGAACCGCAAATCC
AGCGACCAAAAGCCTAGAACAGGCAAAAGAAGTTCAGAGCGATACATGGCACCCTGCCATACACAGCGCGCAGGCCGGAG
GGGAGAGACGACTAAGACCAACCGATAAAACCACCGCAACAGAGATCAGACGTTAGGACCCAGCCCGGAGAAGAAGGATG
CCGAAGCCCGAATTTTGGCGATGAGCGCGTCCAGGGCATCCCGATCGTCTTCTTTAGTCAATAATCTCCACTGCTGCAAG
A
>chr6B_735
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--------------CATAGTGATGACCACCATATTTTGTCCGTACGTACCCA--CCTTCAGCCATATAGCTGAGAATACA
AAGACCAGACAAGCTAAGCTTCTTAGAATTGTCGAACCAATCACAAATTATATTATTCTTTTATTTGATGTAGT------
--------------TATATATATACACACCCTAGCTGTACAACACGCATTTTAGTCCG---TTAGTGCGTGCCGATTGAG
CATTC-------------ATCGATAGAGTAGTTGCCGGCCATGGGGAAGAAGGCCGCCGCCGTGATCTGCGGGACGGCGA
GCTTCCTAGGCCTCCTCGCGGCCATCCTAGGATTCGTTGGCGAGAGCACCAACTCCGAGGTACGCATGATAATTA-----
GCTTTGCTAGCTCCAGTGTGCAGTACGACAAATGCCACGGATCACGAACCGAGCTGACACAGTAGTGCTGC--------T
GCAGTCGTTTGCTGGGTACGACGGGGTGAGGTGCGTGTACCGGAGCACGGCGGCGCGGGGTTGCGGCGTCGCGGCCACGC
TGTTCCTCCTGGCGGCGCAGGTCCTCCTCACCGCCGCCACCGGCTGCTGCGGCTGTTGCCGGCCAGAGACGCGGAAGATC
CCGTCCGAGACCAAGCGCGTCTTCGCCGTCGCCATGTCCATCCTCTCATGGTACGACGCATTACCCTCTCTCTC--TCTC
TAA-----------------------------------------------------------------------------
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-----------------------------------------------------------------------ACTTTCTCT
CTCATGTCTAACGTGTAGTGTACAACACGCA--TGTGCGAACGAAGGATCCTGATGTTCATCGCGGAGGTGCTGTTTTTC
ATCGGCGCGATGTGGAACACGGCCGGGGAGCGGAAGCCGGCTGAAGACACCAGCGCCGGCGAGGAGTGCTACGTGCTGCC
AACTGGGGTGTTCGCCACCGCGTCCGCGCTGTCCCTCATCGTCGTCGGCTTCGGCATCGGCTCCTACTTCCTGCTCGGAG
CGTCGGCGCCGCCACGGGAGCAGCAGCCGGAGATCGCCCTGGGGCAGCCGCCGCCCTACTTCCAGGCCCAGCCCCAGCCC
CAGCCCCACGGCGGCTATCCGGCCGGTGCCACCTGGCAGACACGCGTATGAACCAAGCTCTTCCCCGGCCTTGGAATTTT
GAGAATTGCTTACGCAAATCACACG-------------------------------------------------------
-----------------------------------------------------------------------AGAATTTGT
AAAGTTTTAATGGACCAGCTCATATATATCAACAAGATCAATCGAGCCATGTA--GGAAACCAAAAGAGGATTTCTCTAA
ATCTTTTCGGAAAACTGTTATGGGTA------ATATAGGAATTTTCAGTGGAATTAGCTTCCTGTTGGAGGTGGCA-TTC
CGGCGGGAGTCAAATGTGATTTCTTTTCTGTTAGTTTAGTGATCAAGAAGAAACTAACATATTTGGTGTCTATTGGTGTC
AAAAAACGTATTAC-------------------------------------------------------------ATTAT
AAGACGGAGGGAGTAGTTGTTTATGGTTTATCCTATGAGAAGGGCAAGCAAGACTTTTTATATATATGCGCCGCACAGAC
TTTTTGTTCATTGGCAAGCACCAGTCGTTGTTGAAGGGGATTTCAACTTATAACAGGTAATAGGAATATTCAGTGGAATT
AGCTTCCTGTTGGAGGTGGCAACTATGTGACACAAAATAATCTGACTCGTGATATATAGTGTCAGGGAC-----------
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>chr6D_735
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--------------CATAGTGATGACCACCATATTTTGTCCGTGCGTACCCA--CCTTCAGCCATATAGCTGAGAATACA
AAGACCAGACAAGCTAAGCTTCTTAGAATTGTCGAACCAATCACAAATTATATTCGCTTATTCGACGCTGGTAGTTTGTT
TGTGTATGTAGT----TATATATACACACCCTAGCTGTACATCACGCATTTTAGTCAGTTCTTAGTGCGTGCCGATTGAG
CATTCCCATA-----TCGATCGATAG---AGTTGCCGGCCATGGGGAAGAAGGCCGCCGCCGTGATCTGCGGGACGGCGA
GCGTCCTAGGCCTCCTCGCGGCTATCCTAGGATTCGCCGGCGAGGGCACCAAGTCCCAGGTACGCGTGATAATTA-----
GCTTTCCTAGCTCCAGTATGCAGTAGGACAGGTGCCGCAGATCACGAACAGAGCTGACACAGTAGTGCTG--------GT
GCAGTCGTTTGTTGGGTTCGACGGGGTGAGGTGCGTGTACCGGAGCACGGCGGCGCGGGGTTGCGGCGTCGCGGGCGCGC
TGTTCCTCCTGGCGGCGCAGGTCCTCCTCGCCGCCGCCACCGGCTGCTCCGGCTGTTGCCGGCCAGAGACGCGGAAGATC
CCGTCCGAGACCAAGCGCGTCTTCGCCGTCGCCATGTACATCCTCTCATGGTACGACGCATTACCCTTTCACTTTTTCTC
TAG-----------------------------------------------------------------------------
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-----------------------------------------------------------------------ACTTTCTCT
CTCGTGTCTAACGTGTAGTGT---ACACGCA--TGTGCGAACGAAGGATCCTGATGTTCATCGCGGCGGCGCTGTTTTTC
ATCGGCGCGATGTGGAACACGGCCGGGAAGCGGAAGCCGGCGGAAGAGACCAGCACCGCCGAGGACTGCTACGTGCTGCA
AACTGGGGTGTTCGCCACCGCGTCCGCGCTGTCCCTCATCGTCGTCAGCTTCGGCATCGGCTCCTACTTCCTGCTCGGAG
CGTCGGCGCCGCCACGGGAGCAGCAGCCGGAGATCGCTCTGGGGCAGCCGCCACCCTACTTCCAGG------CCCAGCCC
CAGCCCCACGGCGGCTATCCGGCCGGTACCACCTGGCAGACACGCGTTTGAACCAAGCTCTTCCTCGGCCATGGAATTTT
GAGAATTGCTAATATGCAATATTGAATTCATGCTCCAGCTAACTCATCAAAAGTCTAAACTGATGGAGGGAGATGGGCAA
TATATTTCAACACTCCCCCTCACGTCTAGACTATTTTAGTCGTTGGACGTAGGATCGATGTAGGCCGCAGAAGAATTTGT
AAAGTTTTAATGGACCATCTCATATATATCAATAAGATCAATCGAGCC-TGTA--GGAAACCAAAAGAGGATTTCTCTTA
ATCTTTTCTGAAAACTGTTATAGGTATAGATAATATAGGAATTTTCAGTGTAATCAGCTTCCTGTTGGAGGTGGCATTTC
CGGCAGGAGTCAAATGTGATTTCTTTTCTGTTAGTTTAGTGATCAAGAACAGACCAACATATTTGGTGTCTAGAATTATA
CTCCTTCCGTCTTAAAATAAATGTCTCAAGCTTAACACAACTTTATACTAAAGTTAATATAAAGTTGAAACACTTATTTT
AAGACGGAGGAAGTAGTTGTTTATGGTTCTCTCTATGAGAAGGGCAAGCAAGAGTTTGTATAT----GAGCCGCACAGAC
TTCTTGTTCATTGTCAAGCACCAGTCGTTGTTGAAGGGGATTTCAACTTATAACAGGTAATAGGAATTTTCAGTGGAATC
AGCTTCCTGTTGGAGGTGGCAACTATGTGACACAAAATAATCTGACTCGCGATATATAGTAAGTCAATGACAGAGTGGTA
GACACATAAACACTACTATAATGTGTAACAGTTTATGAGTTTAATCACAACAAATGTAAAATTTCACTACTTTTTAGAGT
TTGATGTTAGATAAAATGACACATATAGATAGACTTTCTTAAATATGCTAACATTAATAT--------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS-------------------------S------------SS--------------------------
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------------SS------------S---------------------------S-S-----------------------
----S--SSSSSSSS----------------S------------------------------------------------
----S--S------------------------------------------------------S------------SSSSS
---------------------------------------------------------------------SSSSSSSSS--
----------------------------SSS---------------------------------------S---------
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------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
---------------------S--SSSSSSSSS---------------------------------------------S-
-----------S----------------------------------S---------------------------------
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-------------------------------------------------------------------------S------
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S---------------S---------------------------------------------------------------
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----------------S--------------S---------------------SS--------------------S--S-
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----------------------S---------------------------------------------------------
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-----------------S----------------------------------------------------------S---
-----------S-----S-S----------------------------------------------------------S-
-S----------S------------------------------------------S------------------------
-----------------------SS-------------------------------------------------------
----------------------------S-------------------------S-----SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S
>forward_164
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----------------------------------------------------------------TCAAGACCAAACGAGC
TCCC----------------------------------------------------------------------------
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>reverse_1793
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--------------------------------CTGTGCGAACGAAGGATCCT----------------------------
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>forward_165
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-----------------------------------------------------------------CAAGACCAAACGAGC
TCCCT---------------------------------------------------------------------------
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>reverse_1839
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------------------------------------------------------------------------------AC
ATCGGCGCGATCTGGAA---------------------------------------------------------------
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>forward_1198
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----------------------------------------------------------ACAGTAGTGCTCGTGCTGTC--
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>reverse_3118
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-----------------------------------------------------------------------------TCC
AGCGACCAAAAGCCTAG---------------------------------------------------------------
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