>input_sequence_59971
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--------------------------------------------------ATGACGATCATGCGGATGTTCCTAGCTCTC
TGCGCCCTTGGGTTCGTCGCAGGAGTAGTAGAAGGTAATCTAGGGAAATGTGTACTCATGGGTAATGATGAAATGTCAGC
TGCTAATCAATACTGATTGCTTGTTTTGCAGATGGATCGTCGTTTGACGTCAGCGCTTACCCGGTCAAGTGGGATGAGGA
CCCATCTGGTAACTTGCTTAACCTCTGTTGCTTCATTGGTTCGACCACTAACTAAGTGAGCATCCCTTCACATCGTGTAT
CATTCT-TTTTGCAGTGGGATCAGGGGACGTGGCCGCTCCACCGTGTAAGGGTTCATCTTTGGTGGCTACTGTAGTTGAT
ATCTAAGCGGATTTTTCTTTGAACCGGATCTTGCTTTAATAAACTGACTAAATGCTGTTACTGTTTGCAGCTCCCGGTAC
TGAGGCGCCGGCGCCGCCTCCGAAGCATCACATGATGGTGAAGAAGGGCATGCTGTTTCTGGAGCGCGACCTCTTTGCCG
GGGCGCTCCTGCCGGCAAACACCCGGCTGGGCTACGTCAGACGCACGAGTTCACCAGGCCCAGTCATTTCAAGTACTACA
AGCCCAGTACCACCCTTCAGGTACAGCAGTTTCGAGAAAATCTTGAAGTTTTACAATGTAACGCACGGCTCCAAGCAAGC
AGGGAGGATCTCGGAGACTCTCCAGTTCTGCGAGGAGGCGGGAGACAAGGAACCACACGCGTGCGCAACGTCTGTGGCCG
CCGCGAGAGACTTCGCGGCCACCGTTTTGGGGACCAAGGAGCCGCGCGCGGTCACTTCAATCCTTCACGGACGCACACAA
CCCCTCCGCTACGTGGTGGCGCCCAACGGAATCGCCAGCGTCGGCGGCGACGCGGTGGTGCCATGCCACCCCCTGGCGTA
CCCTGTGGAGGTCTTTTACTGCCACAACCCCAGCAACGTGCAAGCGCTCCGTGTCCAACTTGTTGGACAGGAGGACCCTT
CCGTCGGCGCCACGGCCATCGCAGTATGCCACAAGGATACCAGCTACTGGGATGAGGCATACTTCATGATGCTCAACGGA
TCCCGTGGCGAGCCGATATGTCACTTCATGCCGGCCAATTACCTTCTGTGGCTCTAG-----------------------
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>chr2D_1_TraesCS2D01G420200
CACACATCTTCCACCGGATGAACCCGTGCATCCTCTTATGAGTAGCGTCGTCACCCCACCAGTATTGTGCTATCGCATCT
GTAATTCCTTTGCAA---ACTTTTTTAGGAATTTTGAAGACCGACATAGCATATGATGGTATTGCCTGAGCCACCGATTT
AAGTAACACCTCCTTCCCACCTGATGATAATACCTTTTCCTTCCACCCACTGATTTTCTGAATAATTCTGGCTATTAAGT
AATGGAAACAATCTGTTCTATCCAACCCAACTCTAGCAGGCAGCCCCAAATACTTATCATTTAATGATTCAGTCATAATG
TCAAGAGTGGTGCAGACTTGTGCTTTTTGCTCCACTGATGTGTTTGGGCTGAAAAAGACACTGTATTTCTCAACGCTCAC
TTTCTGCCCCTAGGCCAGATAATACATATCAAGGACAGATTTCAAACATGAAGCATTCTGATCATTGGCCTTCATCAGAA
TGAGTGAGTCATCCGCAAATAATAAATTAGTCACGGCAGGAGCTTCTGTACAAACCCTTACTCCTTCCAAGTCAACTGAT
G-TTTCAGCATGAGACAGTAGCGCTGTTAAACCTTCGGTTTAGAGAAGAAAAAGATACCGGGATAGGGGGTTAAGCAAGC
TAATTAACCGCTGTGTTAGCTTCATCTAGAAAAGGTGAATCAAACTCCGTTCCTTTTGTAGAAACGTATACTATACTAAC
ACAGACTTTGTGTGTTCCGATCTCCAGGGAGAAAATATTATTTTAAGGGAAGTCAAGGACTACTGCTTGCACATACCGGT
CATGTGTTTCCTTTTTTCGTGGAGAAACGCACGGAA-----CTAAGCACAGACTTTGCATGGTCCGAGAAAAGTGTGAAC
ACAAACTTTGTGGCTTAATGGA-GTAACTCTTATCTCCAAGCGTTTGCGTAGCAGTGCTATAAAAGGATATGAGCAATAA
TGCATCACGCATCAATCACTCTTAACCCAAATCGCTGAAAGCAGTACAGTATGACGATCATGCGGATGTTCCTAGCTCTC
TGCGCCCTTGGGTTCGTCGCAGGAGTAGTAGAAGGTAATCTAGGGAAATGTGTACTCATGGGTAATGATGAAATGTCAGC
TGCTAATCAATACTGATTGCTTGTTTTGCAGATGGATCGTCGTTTGACGTCAGCGCTTACCCGGTCAAGTGGGATGAGGA
CCCATCTGGTAACTTGCTTAACCTCTGTTGCTTCATTGGTTCGACCACTAACTAAGTGAGCATCCCTTCACATCGTGTAT
CATTCT-TTTTGCAGTGGGATCAGGGGACGTGGCCGCTCCACCGTGTAAGGGTTCATCTTTGGTGGCTACTGTAGTTGAT
ATCTAAGCGGATTTTTCTTTGAACCGGATCTTGCTTTAATAAACTGACTAAATGCTGTTACTGTTTGCAGCTCCCGGTAC
TGAGGCGCCGGCGCCGCCTCCGAAGCATCACATGATGGTGAAGAAGGGCATGCTGTTTCTGGAGCGCGACCTCTTTGCCG
GGGCGCTCCTGCCGGCAAACACCCGGCTGGGCTACGTCAGACGCACGAGTTCACCAGGCCCAGTCATTTCAAGTACTACA
AGCCCAGTACCACCCTTCAGGTACAGCAGTTTCGAGAAAATCTTGAAGTTTTACAATGTAACGCACGGCTCCAAGCAAGC
AGGGAGGATCTCGGAGACTCTCCAGTTCTGCGAGGAGGCGGGAGACAAGGAACCACACGCGTGCGCAACGTCTGTGGCCG
CCGCGAGAGACTTCGCGGCCACCGTTTTGGGGACCAAGGAGCCGCGCGCGGTCACTTCAATCCTTCACGGACGCACACAA
CCCCTCCGCTACGTGGTGGCGCCCAACGGAATCGCCAGCGTCGGCGGCGACGCGGTGGTGCCATGCCACCCCCTGGCGTA
CCCTGTGGAGGTCTTTTACTGCCACAACCCCAGCAACGTGCAAGCGCTCCGTGTCCAACTTGTTGGACAGGAGGACCCTT
CCGTCGGCGCCACGGCCATCGCAGTATGCCACAAGGATACCAGCTACTGGGATGAGGCATACTTCATGATGCTCAACGGA
TCCCGTGGCGAGCCGATATGTCACTTCATGCCGGCCAATTACCTTCTGTGGCTCTAGGAGGTGAGGACACGAGCAGCAAG
TACGAGAGTTGAGAGACAGCCGGCCGGTGACGTGTAATTTCGGACTTAGTAGCCGATCTAGCTTAAATAAACGTCACTGT
ATCTGTATGCCCTTACCAGTTATTGTAAGCGCATGTAGCGCAAAGATATATGTACCCCGAAAAATGATACGTATGATACA
GATA-------TATATTGTGATGATGCGTGTCATGTTTTTC------TTTTTTTAGAAATGATGCGTGTCGGTGCTAGTT
TTACCGGGTGGCAAACCCGGTTAGCAATCTCAAACTTTGAATATGCAAAAAAAAAAAAAGATTTTTTCCCATGAAATCAG
ATTCCTTGCTAGCCAGCACCGAAATCATGTCTGACAAACCAATCATAACAAATCAATGGTATATATATTGCAGCTTACA-
--CCCCATCTTCACATATA-------TAAGATGTTCTAACATTTTTATGAGTTGGATGTATATAGATACGCTTTTTTTTG
TGTGTGTTTGTTCGTTCATTTTAGTTTGTATGTAGTCCATATTAAAAGATCCAAACCATTTTACATTTGTGAACGGAGGG
AGTACATTTGAAGGAAAGATTAGAGCACCCCACTCTCTCGGCTGACTCAATCTCTATCAAAAATAAATATCACTCTCTGA
AATCTCAATCTATCTCTCACCTGAAGCCTCTCGAGCCTGAGCTCTCGGTGTCTCTCTCCATCTCAATCCCAGTCAACAGT
GTTTCTCTCCCAACAGCCTTCCTGCCCACGTCAACATCGGCCGCCCTTCAACTCCAGAACGCCATGACCCCCAGCCGCCG
CCTGGCTGCTATCTGTCAAGTG----------------------------------------------------------
----------------------------------------------------GTTTCAGTTGGGTGCAGCAGTTATGGCA
AAACAGTTCAACTTGATCCAACGGCTCCGATCACTCCTCGTTCTCACATGGACAACCACTATCGAATCAGTTTTAACCTA
AACCTGGGCATCGGCAGCCCGAGCCCGGAAATCTCGGGCCAGGCCGGGTCAGGCTTGTCATTCGGGCCGG
>chr2D_1
CACACACTTTCCACCAGGCAAACCAGTGCATTCTCTTTTGGGTAGCATCATCACCCCACCAATATTGAGCCATCGCATCC
GTAATTCCCTTACAA---T-TTTTTTAGGGATTTTGAAGACCGACATAGCATATGATGGTATTGCTTGTGCCACCGATTT
GAGTAATACCTCCTTTCCACCTGTTGATAAAACTTTCTCTTTCCACCCACTAATTCTCTGAATTATCCAGTCAATCAAGT
ATTGGAAACTATCACTCCTATCTAGCCCAACTGTGGCCGGAAGCCCCAAAT---TGTCTTTTAAAGATTCTGTCATAATA
TCTAGTATTGTGCATACTTGAACTCGCATCTCAACTGGTGTACTAGGACTGAAAAATACACTTGACTTCTCAACACTCAC
CTTCTGTCTTGAGGCCGAACAATATAGGTCTAGTATAGGTTTCAAACATTCAGCATTTTGATCATTGGCTTTCATTAAGA
TTAGCGAATCATCCACAAACAATAGATTTGTCACAGCTGGAGCATCCCGACAAAC-------------------------
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>chr2B_1
CACACATCTTCCACCAGGCGAACTAGCGCACCCTCTTATGAGTAGCATCATCACCCCACCAGTATTGCGCTATCGCATCT
GTAATTCCTTTGCAA---A-CTTTTTAGGAATTTTGAAGACCGACATAGCATACGATGGTATTGCCTGAGCCAGTGATTT
AAGTAACACCTCCTTCCCACCTGATGATAATACCTTTTCCTTCCACCCACTGATTTTCTGAATAATTCTGGCGATTAAGT
AATGGAAACAATCTGTTCTATCCAACCCAACTCTAGCAGGCAGCCCCAAATACTTATCATTTAATGATTCAGTCATAATG
TCAAGAGTGGTGCAGACTTGTGCTTTTTGCTCCACTGATGTGCTTGGGCTGAAAAAGACACTGCATTTCTCAACGCTCAC
TTTCTGCCCTGAGGCCAGACAATACATATCAAGGACAGATTTCAAACATGAAGCATTCTGATCATTGGTCTTCATCAGAA
TGAGTGAGTCATCCGCAAATAATAAATTAGTCACGGCAGAAGCTTCTCTACAAACCCTTACTCCTTCCAAGTCAGCTGAT
TCTTTCAGCATGAGACAATAGCGCTGTTAAACCTTCGGTACAGAGAAGAAAAAGATACGG--------------------
-----------TGTGTTAGCTTCATCTAGAAAAGGTGAATCAAACTCCGTTCTTTTTGGAGAAACGTATACTATACTAAC
ACAGACTTTGTGTGTTCCGATCTCCGGGGAGAAAATATTATTTTAAGGGAAGTTAAGAACTACTGCTTGTACATACCGGC
CATTTGTTTCCTTTTTTCGTGGAGAAACGCAAGAACTACTGCTAAGCACAGACTTTGCATGGTCCGAGAAAAGTGTGAAG
ACAAACTTTGTGGCGAAACGGACGTAACTCTTATCTCCAAGCGTTTGCGTAACAGTGCTATAAAAGGATTTGAGCAAGAA
TGCATCACGCATCAATCACTCTTAACCCAAAGCGCAGAAAGCATT--AGTATGACGATCATGCGGATGTTCCTAGCTCTC
TGCGCCCTTGGGTTCGTCGCAGGAGTAGTAGAAGGTAATCTAGGGAAATGTGTACTCATGGGTAATGATGAAATGTCAGC
TGCTAATCAATACTGATTGCTTGTTTTGCAGATGGATCGTCGTTTGACGTCAGCGCTTACCCGGTCAAGTGGGACGAGGA
CCCATCTGGTAACTTGCTTAACCTCTGTTGCTTCATTGGTTCGACCACTAACTAAGTGAGCATCCCTTCACATCGTGTAT
ATCATTCTTTTGCAGTGGGATCAGGTGACGTGGCCGCTCCACCGTGTAAGGGTTCATCTTTGGTGGC-----TAGTTGAT
ATCTAAGCGGATTTTTCTTTGAACCGGATCTTGCTTTAATAAACTGACTAAATGCTGTTACTGTTTGCAGCTCCCGGTAC
TGAGGCGCCGGCACCGCCTCCGAAGCATCACATGATGGTGAAGAAGGGCATGCTGTTTCTGGAGCGCGACCTCTTTGCCG
GGGCGCTCCTGCCGGCAAACACCCGGCTGGGCTACGTCAGACGCACGAGTTCACCAGGCCCAGTCATTTCAAGTACTACA
AGCCCAGTACCACCCTTCAGGTACAGCAGTTTCGAGAAAATCTTGAAGTTTTACAATGTAACCCACGGCTCCAAGCAAGC
AGGGAGGATCTCGGAGACTCTCCAGTTCTGCGAGGAGGCAGGAGACAAGGAACCACACGTGTGCGCAACGTCTGTGGCAG
CCGCGAGAGAGTTCGCCGCCACCGTTTTGGGCACCAAGGAGCCGCGCGCGGTCACTTCAACCCTTCACGGGCGCACAGAA
CCCCTCCGCTACGTGGTGGCGCCCAACGGAATCGCCAGCGTCGGCGGCGACGCGGTGGTGCCATGCCACCCCCTGGCGTA
CCCTGTGGAGGTCTTTTACTGCCACAACCCCAGCAACGTGCAAGCACTCCGTGTCCAACTTGTTGGACAGGAGGACCCTT
CCGTCGGCGCCACGGCCATCGCAGTATGCCACAAGGATACCGGCGACTGGGATGAGGCGTACTTCGTGATGCTGAACGGA
TCCCGTGGCGAGCCGATATGTCACTTCATGCCGGCCAATTACCTCCTGTGGCTCTAGGAGGTGAAGACACGAGCAGCAAG
TACGAGAGTTGAGAGACAGCCGGCCGGTGACGTGTAATTTCGGACTTAGTAGCCGATCTAGCTTAAATAAACGTCACTGT
ATCTGTATGCCCTTACCAGTTATTGTAAGCGCATGTAGCGCAAAGATATATGTACCCCGAAAAATGATATGACACAGTCA
TACAGATATAGTATATTGTGATGATGCGTGTCATGTTTTTTCTTTTTTTTTTACAGAAATGATGCGTGTCAGTACTAGTT
TTAGCTAGCTCATAGACTTTT-----------------------------------------------CCATGAAATCAG
ACTCCATGCTAGCCAGCACCGAAATCATGCCTGACAAACCAATCATAGCAAATTAGTGTTATATATATTGCAGCTATGTA
TTCCCCATGTTCACATATACTCCGTATAAGATGTTCTAACATTTTTGTGAGTTGGATGTATATAGACAC------TTTTT
TGTGTGTTTGTTCGTTCATTTCAGTTTGTATGTAGTTCATATTAAAAGATCCAATCAATTTAACATTTGTGAACGGAGGG
AGTACATTTGAAGGAAAGATTAGAGCACCCCACTCTCTGGGCTGACTCATTCTCTAGCAAAAATAAATATCACTCTCTGA
AATCTCCATCATTCTCTCACCTGAAGCCTCTCGATCCTGAGCTCTCGGTGTCTCTCTCCATCTCAATCCCACTCAACAGT
GTTTCTCTCCCAACAACCTTCCTGCCCACGTCAACATCGGCCGCCCTTCAACTCCAGAACGCCATGCCGCCCAGCCGCCG
CCTGGCTGCTACTCTCTCCGTAAACTAATATAAGAGCGTTTAGATTACTATTTTAGTGATCTAAACACTCTTATATTAGT
TTACAGAGGGAGTATCCTGTCAAGTCCCAGGCGTTGTATACAAGCTTGACGAGTTTCAGTTGGGTGTAGCAGTTATGGTA
AAACAGTTCAACTTGATCCAACGGCTCAGATCACTCCTCGTTCTCACATGGACAACCACTATCGGATCAGTTTTAACCTA
AACCTGGGCATCGGCAGCCCGAGCCCAGAAATCTCAGGCCGGGCCGGGTCGGGCTTGTCATTTGGGCC--
>chr6B_1
CACACATCTTCCACCAGGCGAACCAGTGCATCCTCTTATGAGTAGCGTCGTCGCCCCACCAGTATTGCGCTATCGTATCT
GTAATTCCCTTGCAA---ACCTTTTTAGGAATTTTAAAGACCGACATAGCGTACGATGGTATTGCCTGAGCCACTGATTT
AAGTAACACCTCCTTCCCACCTGATGATAATACCTTTTCCTTCCACCCACTGATTTTCTGAATAATTCTATCGATTAAGT
AATGGAAACAATCTGTTCTATCCAACCCAACTGTAGCAGGCAGCCCTAAATACTTATCGTTGAATGATTCAGTCATAATG
TCAAGAGTGGTGCAGACTTGCGCTTTTTGCTCCACGGATATGTTTGGGCTGAAAAAGACACTGGATTTCTCAACGCTCAC
CTTCTGCCCCAAGGCCAGACAATACATATCAAGGACATATTTTGAACATGAAGCATTCTGATCATTGGCCTTCATCGGAA
TGAGTGAGTCATCCACAAATAATAAATTAGTCACGACAGGAGCTTCTCTATAAACCCTTACTCCTTCCAAGTCACCTGAT
G-TTTTAGCATGAGACAGTAGCGCTGTTAAACCTTCAATACAGAGAAGAAAAAGATACGGGGATAGGGGGT---------
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>chr1A_1
CACACATTTTCCACCAGGCAAACCAATGCATCCTCTTGTGAGTAGCCTCGTCACCCCACCAATATTGCGCTATCGC-TCT
GTAATTTCTTTACAAACTT-TTTTTTAGGAATTTTGAAGACCGACATAGCATATGATGGAATTGCTTGAGCCACTGATTT
GAGCAACACCTCTTTCCCACCTGATCATAATACCTTTTCCTTCCAACCACTTATTTTCTGGATAATTCTATCAATTAAAT
ATTGAAAGCAATCTATTCTGTCCAGGCCAACTGTAGCAGGCAGCCCGAAATACTTATCATTTAGGGCTTCAGTCATAATG
CTAAGGATGGTACAAACCTAAGCTTTTTGTTCCACTGATGTATTTGGGCTGAAGAATACGCTGGATTTCTCCACACTTAC
CTTTTGCACGGATGCTCTGGAGTACATATCCAGTACATGCTTCAACCCTGAAGCATTCCGATCATTGGCTTTCATTAAAA
TCAGTGAATCATCCGCGAACAGTAAGTTTGTAACTGCAGGAGCATCTCTACAGACTCTAACTCCTTCCAAATTGCCTGAA
T-TTTCAGCATGTGACAATAGTGCTGTTAGTCCTTCGGTACAGAGGAGGAAAAGA-------------------------
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>chr3D_1
CACACA-TTTCCACCAGGCAAACCAGTGCATTCTCTTTTGGGTAGCATCATCACCCCACCATTATTGCACCATCGCATCC
GTAATTCCCTTACAA--TT-TTTTTTAGGGATTTTGAAGACCGACATAGCATATGATGGTATTGCTTGTGCCACCGATTT
GAGTAATACCTCCTTTCCACCTGTTGATA-AACTTTCTCTTTCCACCCACTAATTCTCTGAATTATCCTGTCAATCAAGT
ATTGGAAACTATCACTCCTATCTAGCCCAACTGTGGCCGGAAGCCCCAAGTATTTGTCATTTAAAGATTCTGTCATAATA
TCTAGTATTGTGCATACTTGAACTCTCATCTCAACTGGTGTACTAGGACTGAAAAATACACTTGACTTCTCAACACTCAC
CTTCTGTCCTGAGGCCGAACAATATAGGTCTAGTACAGATTTCAAACATTCAGCATTTTGATCATTGGCTTTCATTAAGA
TTAACGAATCATCCACAAACAATAGATT----------------------------------------------------
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>SNPs
---------------S-SS-----S------------------------------------------S------------
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------------------------------------------------------------------------S-------
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---------------------------------------------------------------S----------------
----------S--------S------------------------------------------------------------
-----------------------------------------------S--------------------------S-----
---------------------------------------SS-----------------S------------SSSSSSSSS
SSSSSSSSSSS-----------------------------------------S-----S---------------------
-------------------------S---------------------------S---S-----------S---------S
---S---------------------------S-S-S-------------------------------------------S
--------------SS--S--------------------------------S-----------------S-------S--
-------------------------------S---S-------S-SS---------------------------------
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--------------------------------------------------------------------------S-----
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SSSSS--------------------S-----------------------------------------SSSSS--------
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------------S-------------------------------------------------------------------
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--------------------------------------------------------------S-----------------
---------------------------------------S-------------------S------------------S-
----------S-----S--------------S----------------------------S---------S------S--
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---------------------------------------------S----------------------------------
-----------------------------------------S--S-------------S------S-------S------
--------------------------------------------S-------------------S---------------
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---------------------------------------------------------------------S-SSSS-SS--
S-S-------------------------------------S-----------SS----------------S--S------
---S-SS-SSSSS-SS-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------
-S---S-----------------------S-----------------S-----S-S--S----------------SSSS-
--------S-------------------------------------S-------------------S--SSSSSS----S
---------------------S--------------S-----------------S-S----S------------------
--------------------------------------S----------S------S-----------------------
------S---SS----------------------S------------------------------------S--------
---------------S--------------------------------------------------S-S-----------
-----------SSSSSSSS--S----------------------------------------------------------
------------------------------------------------------------------S-----------S-
---------------------------S------------------------------------S---------------
--------------------------S--------S----S---------S-----------S-----SS
>forward_68
------------------------------------------------CGTCACCCCACCAGTATTGT------------
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>reverse_2066
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-----------------------------------------------------------------ATGATGCTCAACGGA
TCCCG---------------------------------------------------------------------------
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>forward_804
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----------------------------------------------------------------GCTTGCACATACCGGT
CATG----------------------------------------------------------------------------
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>reverse_2410
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---------GGCAAACCCGGTTAGCAATC---------------------------------------------------
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