>input_sequence_59936
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----------------------------------------ATGCTGCCGCCCGAAGAAATCACCCTGAACGACGACGTCC
TGACGGAGATACTCCTTCGCGTGCCGCCCAAATCCATCCTCCGCGCCCGCGCCGTCAGCAAGCACTGGCGCCACATCGCC
ACCCGCCCTTGTTTCCTCACAGCCTACGCGCTCCGACGCCAGCCGGAGATCGTCGCGTTCTTCCGGCTCGACCAAGGCGA
TGAGCCAGCCGACGACAAAAGCAGCACCAATAGCAAATACAACAAGATCAAAAAAGCAGTTTGCGCCATCCCATTTGACG
ACGACTTGGAGGGTCGACCACTCCTCTACTATGATCCTACCACCATGTTGTTCCGAGGCTTTTGCTACGGGCTCCTGCTT
TTCAACCGAGGATGCGACTCGCTCTTGATCTGGAACCCAGCGACGAGGCAAGTGGGCCCCCTTCCATCACCGCCAATGGC
ATCATCGCGTGCTTCTGTTCAACCGTTTTGCTTCTATTACCACCGGCCGTCCGGAAGGTACCGCGTGTTGTGCCATGTCG
ATGATATCCCCGCCGACGACACCGCCAACTACATTCTTTCGACCGGCGCCGCCGAGCCGCGGCGGCTCGGGGACACCATG
CCCGACGGCGTGCTTCGGGAATCGTCCGCCGTTACTCTCCACGGGAGCCTGCATTGGCTGATACACCCGGCTAAGTCTTG
TAACCCCGACAAGATGGTGGCCTTTGACACGGTGTCAGAGAAGTTCCGGACGATGGCACCACCCCCGGTGCCGGCAGCAG
ATAGCCTCATCTACAAAACGCCTCACCTGTTCGAGATGAACGGGGCGCTCGCTGTGTCGGCGATGAGGGATGCGCCACAC
ATGGAAGTGTGGACGCTTGAGGACTATAATCAGGAGAGGTGGGCATGGCGCCTCAGGATCGGCATACCACAATACCGGAT
CTG------CTCACCGTTCACGGCCTCGGCCATCGGCGTCCTCGAGGTAAACATGCTGGTCGTCCAACACGATGGTCGGG
TGATGCTACACGACATGGCTGGGAAGAGGAATCATAGGACAGTTAAAGTTGGGACGACAGGGGATATTTCAACTGTATGG
CGACACGGGATCTACATGGAGAGCCTCGTCCCGCTCACACCCTCTCCGTCATGA--------------------------
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>chr5D_1_TraesCS5D01G485600
TTCATGATTTTCAAAAATGTTCAGGAAGTCATAGAATGTTTACAGATTCAAAAATTATCCGTGATTTTGGAAAACAAAAT
GTCTACATATTCAAAGTGTTCACAAGTTTAAAAAGCTGTTCTACAAATCAAAAATGTTTGCGTATTCCAAAAAAGTTTGT
GAATTTAATTTTTTTTCAATAATTCAAAAAAATCATTAATTTTTAAATGTGTTTAAAAAATTCAAAAAATTGTCTCAAAT
TTCAAAAATATTCCCAAACAATTCAATAAAAGTTCACGGATTCAAAAAATTGGGTGGAAAATAAACCGGTCTGGGCCGAC
CCCTAGAGTAGACAGCGTGAGCGGTGCGTATGTGGCCAGGGAGTTTTTTTTAGCACAACCTACACGCGGAATAGGAACCG
CCCAATGGCTGGGTGATGATTTTGGCTTGCTTGGTGTACGCACGGTTCCTATTAGACGCGTAGGTTATGCTATAAAATTG
GCGCCCATCATTGAATCAACATGTGCTTGGATGGTTAGAAGGACAGGGATATCCTTGGTCCATCAGGGTTCATGTCCTGA
TGCTTGCATTTATCTTGAATTTATTTTAGGATTATCGGCGATGCGCGTTCAGTGGGAGGAGACGTTTTCGTCGACTACAA
GGCATCTATGGTGAGGCTCAGTCTCTCGGAGATGCTAATAGGGGTATGATATGTGTGTGTGCACGTCCATAAAGGTGAGT
GTATGCGCATATATACAAGCGTTTTGCAGTCGGACCTATCGTACCGTAAGTGGGTTGGGCCTGGTAGTTGGAGTCGAATT
GAGTGAGGCAAACGCGAGGCGGGCTGGTAAGCCCCGACTCGGCTCGCAAGACATTGGTCAGTCCGTCCTTAAGTAGAGTT
GCAACTTGCAACTACACCTTATTTATATTATATAGGAGAAAAACGAAAAATAGAGTTGTAAGTACGGGTTCAAATCGAAA
CCAAAATCGACGGAGCTGCATCCGCCAGAGGCCAGACGCAATGCTGCCGCCCGAAGAAATCACCCTGAACGACGACGTCC
TGACGGAGATACTCCTTCGCGTGCCGCCCAAATCCATCCTCCGCGCCCGCGCCGTCAGCAAGCACTGGCGCCACATCGCC
ACCCGCCCTTGTTTCCTCACAGCCTACGCGCTCCGACGCCAGCCGGAGATCGTCGCGTTCTTCCGGCTCGACCAAGGCGA
TGAGCCAGCCGACGACAAAAGCAGCACCAATAGCAAATACAACAAGATCAAAAAAGCAGTTTGCGCCATCCCATTTGACG
ACGACTTGGAGGGTCGACCACTCCTCTACTATGATCCTACCACCATGTTGTTCCGAGGCTTTTGCTACGGGCTCCTGCTT
TTCAACCGAGGATGCGACTCGCTCTTGATCTGGAACCCAGCGACGAGGCAAGTGGGCCCCCTTCCATCACCGCCAATGGC
ATCATCGCGTGCTTCTGTTCAACCGTTTTGCTTCTATTACCACCGGCCGTCCGGAAGGTACCGCGTGTTGTGCCATGTCG
ATGATATCCCCGCCGACGACACCGCCAACTACATTCTTTCGACCGGCGCCGCCGAGCCGCGGCGGCTCGGGGACACCATG
CCCGACGGCGTGCTTCGGGAATCGTCCGCCGTTACTCTCCACGGGAGCCTGCATTGGCTGATACACCCGGCTAAGTCTTG
TAACCCCGACAAGATGGTGGCCTTTGACACGGTGTCAGAGAAGTTCCGGACGATGGCACCACCCCCGGTGCCGGCAGCAG
ATAGCCTCATCTACAAAACGCCTCACCTGTTCGAGATGAACGGGGCGCTCGCTGTGTCGGCGATGAGGGATGCGCCACAC
ATGGAAGTGTGGACGCTTGAGGACTATAATCAGGAGAGGTGGGCATGGCGCCTCAGGATCGGCATACCACAATACCGGAT
CTG------CTCACCGTTCACGGCCTCGGCCATCGGCGTCCTCGAGGTAAACATGCTGGTCGTCCAACACGATGGTCGGG
TGATGCTACACGACATGGCTGGGAAGAGGAATCATAGGACAGTTAAAGTTGGGACGACAGGGGATATTTCAACTGTATGG
CGACACGGGATCTACATGGAGAGCCTCGTCCCGCTCACACCCTCTCCGTCATGATAATAAGTACTCCCTCCGTCACAAAA
TGTAAGACGTTTTTTAACATTACACTTTTCGACTCTATAATAAAAAGAGTATACCTCGCTTCCATGTCGGCGGTCAGCCG
GTGGTATACGTGCGCGAGTGCGTTGCGCGGCCGCTCGTCGTTGTTGTCATTCGGAGAAGTTGATTGTCCATGCATTTTCC
ATCTTGTGGTTTCCTGCCTTGACGGGTCATGGTCATGGACCACGCCCGCGTATTTTCAGGGTTGCGGGCGCGATGTGTCA
AGGTGAAGCAACCAAATTTAGTTGCCCTGGCTACTGGGTAGAAATGTGTATAAACAAACGAACAAACTTTATATATTTGG
AGAAAATCTCACAAAACTACAAGAGTCATGGTTTCTGGACATGTACGGTCTACCCTCCCTGAATGAAGCATCAAGATTCA
GATTGAGGGCCACACACCGTCCGAAATTACTTGTCATAAAAACGGATGTATCTACAACTAAAATACATCTAGATACATTC
ATTTCTTGGACGAGTAATTCCAAACGGAGGGAATAGTATAATAGCCGATGCCTGATTTGCACAATTGTTACTCTCGGGTT
TGATTGGAAGCTTACACATGGACGTGTGCCCATCAGGCTGGAAGGGGCTTTACTGAAAATCTCACACGCGCAATCACTTA
CAGCACGATTGCAATCGGTGCTTATATTTGTTCCACTGAATGCATCAATGTCTTTATCAGCTCAAAAACATTTTATACAC
TATAATTCATTTGAACCACCACATCTTTTGCTTTAATGAACAGACAAAATACCCATACTAGTTTTTCTTCAGTGCAAAAA
GAAGAAGAAAAACATCATTACAGATCGATCACACGAAAGTTGTCGGAGCCAAACATCATCATTTTTTTGCACAAACATGA
ATTGTTTCATAGGACATGAACGGAACAAAACCCTACTTATTTTCTTGCAAGCCCTTGACCATCTAGCGACCCAAGAACCT
GAGATTACTACTTC
>chr5A_929
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------------------------------------------------AATAGAGTTGCAAGTGCGGCTTCAAATCTAAG
CCAAAATCGATGGAGCTGCATCCGCCAGACGCAG-------TGCTGCAGCCCGAAGAAATCACCCTGAACGACGACGTCC
TGACCGAGATACTCCTTCACGTGCCGCCCAAATCCATCCTCCGCGCCCGTGCCGTCAGCAAGCACTGGCGCCACATCGCC
ACCCGCCCTTGCTTCCTCGCAGCCTACGCGCTCCGACGCCCGCCGGAGATCGTCGCGATCTTCCGGCTCGACCAAGGCGA
TGAG------------AAAAGCAGCACCAATAGCAAATACAACAAGATCAAAAAAGCAGTTTGCGCCATCCCATTTGACG
ACGACTTGGAGGGTCGACCACTCCTCTACTATGATCCTACCACCATGTTGTTCCGAGGTTTTTGCGACGGGCTCCTGCTT
TTCAACCGAGGATGCGACTCGCTCGTGATCTGGAACCCAGCGACGAGGCAAGTGGCCCCCCTTCCATCACCGCCAATGGC
ATCATCGCGTGCTTCTGTTTCACCGTTTGGTTTCTATTACCACCGGCCGTCCGGAAGGTACCGCGTGTTGTGCCATGTCG
TTGATATCCCCGCCGACCACACCGCCAACTACATTCTTTCGACCGGCGCCGCCGAGCCGCGGCGGCTCGGGGACATCATG
CCCGACGGCGTGCTTCGGGAATCGTCTGCCGTTACTCTCCACGAGAGCCTGCATTGGCTGATACACCCACCTAAGTCTTG
TAACCCCGACAAGATGGTGGCCTTTGACACGGTGCCAGAGAAGTTCCGGACGATGGCGCCACCCCCGGTGCCCGCAGCAG
ACAACGTTATGTACGGAAAGCCTCACCTGTTCGAGATGAATGGGGTGCTCGCTGTGTCGGCGATGAGGGATGTGCCACAC
ATGGAAGTGTGGACGCTCGAGGACTATAGTCAGGAGAGGTGGGCATGGTGCCTCAGGATCAGCATACCCCAAACCCGGAG
CATAATCGTCTCACCGTTCACGGCCTCGGCCCTTGGAGTCCTCGAGGGGAACATGCTCGTCGTCGAGCACAATGGTATGG
TGATGCTACATGGCATGGTTGGGAAGAGGAAGCGGAGGATGGTTGACATTAGCACGATGGGAAACATTTCAATTGTGTGG
CGACAGGGAATCTACACGGAAAGCCTCGTGCCGCTCACACCCTCTCCGTCATGATAATA---------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S----S---S--------S--S
----------S------------------S--SSSSSSSSS------S--------------------------------
----S-------------S------------------------------S------------------------------
-----------S------S---------------------S----------------S----------------------
----SSSSSSSSSSSS----------------------------------------------------------------
----------------------------------------------------------S------S--------------
------------------------S------------------------------S------------------------
-------------------SS-------S-S-------------------------------------------------
S----------------S---------------------------------------------------------S----
--------------------------S----------------S------------------------SS----------
----------------------------------S----------------------S--------------S-------
-S-S-S-S--S---SS--S---------------------S----S--------------------------S-------
-----------------S----------S-------------------S-----------S-------S---SS-----S
-SS----------------------------S-S--S----------SS--------S------S-S---S-----SS--
----------S-S-----S------------S-SS----SS---S-SS--S-S----SS--SS-S-------S---S---
-----S--S-------S---S--------S-----------------------------SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS
>forward_675
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---------------GCTCAGTCTCTCGGAGATGC---------------------------------------------
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>reverse_2522
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-----------------------------------------TGTACGGTCTACCCTCCCTG-------------------
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