>input_sequence_59910
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------------------ATGTCCAAGATGCCAAATCCAGAGAAGAAGTTGTTCAGGATGCCAAGCGCAGATGCCGAGAT
GGCTGCACTGCACAAGGAATGGGATGATGCTCGGTGTCCAATTTGCATGGACCATCCTCACAATGCTGTACTTCTGTTGT
GCAGTTCTCATGACAAAGGATGCAGATCCTACATATGTGATACAAGCTACAGACACTCAAATTGCCTAGACAGATTCAGG
AAAATGAAAGTGAACCGCATGGACAGTTCATCACAGCCAAGCTCTTCCTTGCCTGGAGATACAAGTAACCAAAGTGCTTC
ACAGAGATCCCATCTCGGTCCCAGTAGAGGGAGCCCCAGGCTGTTAATCGATGTACCTGAATTCCGTGAAAATCTCAGTC
ATGAACATGTCATCCGTAGCCCTGCAGCCGTATCTGGACAACAAGAAGGAACTAACTATAATCAAGGTCCAGTAACATTG
GAAGCTCTTATGGGACAAGTGACTGGGCAAGTCGAGTCAGCTGAGGCATCCAACTCAAACGAATTGATGTGCCCACTGTG
TAGGGGTGCTGTGAAGGGCTGGGAGATCATCAAAGATGCCAGACAGTACCTGGATGAGAAGCCAAGAAGCTGCTCGCGGG
AAGCATGCGCATTTTCTGGTACCTATGGTGCGCTCCGTAGACATGCCAGGAGGGTGCACCCCACTACCAGGCCTGCTGAT
GTGGACCCATCAAGGCGCCGCGCGTGGCACCGCCTGGAGAACCAGCGAGAGTATGGTGACATAATGAGCGCAATCAGGTC
GGCTATGCCTGGGTCAGTTGTGCTTGGAGATTACGTCATTGAAGGTGGGCCAAGTGCAGATGAGCGTGAAGACGGTGGGC
CAAGTGAGCGAAGCGGGTCTCTGTTGACAACGTTCTTTCTATTCCATATGATGAACAGTGGTCCGCTGAGATCAGGAGAC
GAGCCAAGAGCCTCATCAAGGGCCCTGAGAAGGCAGAGGCGCCGCTACCTGTGGGGAGAGAACTTGCTAGGCCTCCAATA
CGACGACGACGACGATGATGAGGATGAGGATAGCCTAGACGAGGAGGTTCAGAGGCCCAGGACTCGCAGGAGGTTCGTGA
GGTCAAGGTCGGAGGAGCGGCGCTGA------------------------------------------------------
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>chr2A_1_TraesCS2A01G011300
TCACTATTGCAGTGTAATATAAAGAATATTGTTATGTTACTTCGGCAAAGGAAAACTGTTGTTTATGTTTTTTAAGGTAA
ACATGCTGTATATAGTTAAAATTATCTACATCGTTTGTCCTAGTATTGGACATGGATAACTTTTATAACTTTCTGATGAT
ATATTTTATAATTTACTAATTACTACTACTCCCTCCGTCCCGAATTAGTTGTCTCAGATTTGTCTAGATACGGATGTATC
TAGACACTTTT-------TAGATGCATCCGTATCTAGACAAATCTGAGACAACTAATTCGGGACGGAGGTAATA------
--------------------------------------------------------------------------------
--------------------------------------GTATTTTAAGGTGAACGGAATCTTATCAACCGTTTCCTTTAC
TTATTTGATTGAAGATCATACGATGAGTTACTAAAACGAGGATAAATAAGTTCAAATAACATGATTGCAATTACACC--T
TTCAGTGCTTTTGCACATGTAGTTTGTGCTGCCACTTCATCAGACTAGGACATATATTGAACCGGAGCACCTAATTATAC
AGGTCTTGGACGTAACAGGGGGCTAGGATATATCAAATCATCTAGTCTCTTGTATTAATCTCATCAGTTCTTGTTAAGAG
TTGATTTTACCGCTCTGGTTAGTGTAATATGATCGCTGTTGGTTGAACATATGAATCAATTGGATAGTTAGATTCAATAT
CTGCAAGGTGCAAATTAATTATCTTAATTGATTGAAATCTTAACTGTATGTAAATTTTATATATAACTTGGATTGCATTG
ACTGAAGCTCAAACTTGTTAGTTTATTGATAACTTGGATGAGCAGAAAACATATAAATCAATTTCGTACCTTCACTGTTG
AAGCTGGTTAACATAAGTT---CTTTTTCCCCTTTGGCTGCCTTTCTGATTTCAACATTTTCTGATACTTGTGTATATAT
CTCGAATAAT-TAGACTCAGTAAAGATGTAATCATTCCTAGATATGTTTCGATGTT-AAATTGACTAGTTATGTTCTTCT
AATTGGTCCCAGAACAGCATGTCCAAGATGCCAAATCCAGAGAAGAAGTTGTTCAGGATGCCAAGCGCAGATGCCGAGAT
GGCTGCACTGCACAAGGAATGGGATGATGCTCGGTGTCCAATTTGCATGGACCATCCTCACAATGCTGTACTTCTGTTGT
GCAGTTCTCATGACAAAGGATGCAGATCCTACATATGTGATACAAGCTACAGACACTCAAATTGCCTAGACAGATTCAGG
AAAATGAAAGTGAACCGCATGGACAGTTCATCACAGCCAAGCTCTTCCTTGCCTGGAGATACAAGTAACCAAAGTGCTTC
ACAGAGATCCCATCTCGGTCCCAGTAGAGGGAGCCCCAGGCTGTTAATCGATGTACCTGAATTCCGTGAAAATCTCAGTC
ATGAACATGTCATCCGTAGCCCTGCAGCCGTATCTGGACAACAAGAAGGAACTAACTATAATCAAGGTCCAGTAACATTG
GAAGCTCTTATGGGACAAGTGACTGGGCAAGTCGAGTCAGCTGAGGCATCCAACTCAAACGAATTGATGTGCCCACTGTG
TAGGGGTGCTGTGAAGGGCTGGGAGATCATCAAAGATGCCAGACAGTACCTGGATGAGAAGCCAAGAAGCTGCTCGCGGG
AAGCATGCGCATTTTCTGGTACCTATGGTGCGCTCCGTAGACATGCCAGGAGGGTGCACCCCACTACCAGGCCTGCTGAT
GTGGACCCATCAAGGCGCCGCGCGTGGCACCGCCTGGAGAACCAGCGAGAGTATGGTGACATAATGAGCGCAATCAGGTC
GGCTATGCCTGGGTCAGTTGTGCTTGGAGATTACGTCATTGAAGGTGGGCCAAGTGCAGATGAGCGTGAAGACGGTGGGC
CAAGTGAGCGAAGCGGGTCTCTGTTGACAACGTTCTTTCTATTCCATATGATGAACAGTGGTCCGCTGAGATCAGGAGAC
GAGCCAAGAGCCTCATCAAGGGCCCTGAGAAGGCAGAGGCGCCGCTACCTGTGGGGAGAGAACTTGCTAGGCCTCCAATA
CGACGACGACGACGATGATGAGGATGAGGATAGCCTAGACGAGGAGGTTCAGAGGCCCAGGACTCGCAGGAGGTTCGTGA
GGTCAAGGTCGGAGGAGCGGCGCTGACGCGTGGGCGACCATGGTAACTAAATCCTTCACCCACCGTGAAGTTCTTTACCC
CATGAATTAGCGATGACCCCTTGCG--TGATCTTTTGCCATGCCAGCC-GAGGCGCTAGGTGACATGCTGCTTCAGTCA-
AATGCCTAAAGTGCAGCACGGATCCTTGCGCTGGAAGATCCAGGTCAACCGTGTCGCGTTTAAAGGGTTGGATGGTTGGC
CG--------------------CACAAGGCATGACCATCCTCAGGGCATATGCTGGAACGTGTGCTCGCTCGCTGTTGTG
ACCGAAGCTGCTCTTGATGCACCTCGCGATGTTTGCTCGGCGTGTTACCTATATCCGTATCTATTGTATATATAGTGTTG
GAAGCTAGTACCATTTACCGAATTCGTGCATGTACTCTTTTGCACTTGGTATCTTTGTTCAATTGAAGCTGGTAGGGATT
GCATTTGGCCCTGATGGTTTTATGTGTTATGCTGGTTGTTCTATCTGTTCCGGTTATCGCGCTCCATATGCTCCTGTCAC
AAATCTTTGGAGTGCCTAGTGTTGTTGGCTGATGGTTGTCCCTTTTCATTCTATTGGAACCCTTGCAGGATTATGCTCTG
ACTGCCGGAAGTGGAGTTTTTTAGCTCAAGCTCAAATGAGCTCGATCTAAAATCGGGGGAAAAAATCAAAAATAAATAAA
TAAATAATCTGAATTTTTT--TGGTGAAAACATCAACAAAAGTTTTACGTGCTCATGAAATTTCATCTTGAAATCACTTT
CTTGGAAGTCATGGCAAAGAAAACAAATTGATGCTCCAAAAGTGTTATTTTCGAAAGCATTT-GGAGTGTTGTTTTTTTT
GCCATGACTTCTATTAATGTCTTCTCAAGATGAAATTTCGTGGGCACGTAAAACTTTTGTCAATGTTTG--CACAAAAAA
AATCAGGATTTCTTGAATGTTTTCTCTTTTTTCCTTTCTAATTTTACTGTTCATATTTGAGCTCGGGAGCAGAAGATGAC
TTTCCCTGCCTGTTC
>chr2D_1
TCACTATTGCAAAGTAATATAAAGAATACTGTTATGTTACTTCGGCAAATGAAAAATGTTGTTTATGTTTTTTAAGGTAA
ACATGCTGTATATGGTTAAAATTATCTACATCGTTTGTCCTAGTATTGGACATGGATAACTTTTATAACTTTCTGATGAT
ATATCTTATAATTTACTAATTACTACTACTCCCTCCGTCCCGAATTAGTTGTCTCAAATTTGTCTAGATACGGATGTATC
TAGACACTT------------ATACATCCGTATCTAGACAAATCTGAGACAACTAATTCGGGACGGAGGTAATACTCCCT
CCGTCCGAAAATACTTGTCATCAAAATGAATAAAAAGAGATGTATCTAGAACTAAAATACGTCTAGATACATCGCCTTTT
ATCCATTTTGATGACAAGTATTTCTGGACGGAGGAGTAGTATTTTAAGGTGAACGGAATCTTATCAACCGTTTCCTTTAC
TTAT----TTGAAGATCATACGATGAGTTACTAAAACAAGGATAAATAAGTTCAAATAACATGATTGCAATTACACC--T
TTCAGTGCTTTTGCACATGTAGTTTGTGCTGCCACTTCATCAGACTAGGACATATATTGAACCGGAGCACCTAATTATAC
AGGTCTTGGACATAACAGGGGGCTAGGATATATCAAATCATCTAGTCTCTTGTATTAATCTCATCAGTTCTTGTTAAGAG
TTTATTTCACCGCTCTGGTTAGTGTAATATGATTGCTGTTGGTTGAACATATGAATCAATTGGATAGTTAGATTCAATAT
CTGCAAGGTGCAAATTAATTATCTTAATTGATTGAAATCTTAACTGTATGTAAATTTTATATATAACTTGGACCGCATTG
ACTGAAGCTCAAACTTGTTAGTTTATTGATAACTTGGATGAGCAGAAAACATATAAATCAATTTCGTACCTTCACTGTTG
AAGCTGGTTAACATAAGTT---TTTTT--CCCTTTGGCTGCCTTTCTGCTTTCAACATTTTCTGAGTCTTGTGTATATAT
CTCGAATAAT-TAGACTCAGTAAAGATGTAATCATTCCTAGATATGTTTCGATGTT-AAATTGACTAGTTATGTTCTTCT
AATTGGTCCCAGAACAGCATGTCCAAGATGCCAAATCCAGAGAAGAAGTTGTTCAGGATGCCAAGCGCAGATGCCGAGAT
GGCTGCACTGCACAAGGAATGGGATGATGCTCGGTGTCCAATTTGCATGGACCATCCTCACAATGCTGTGCTTCTGTTGT
GCAGTTCTCATGACAAAGGATGCAGATCCTACATCTGTGATACAAGCTATAGACACTCAAATTGCCTAGACAGATTCAGG
AAAATGAAAGTGAACCGCATGGACAGTTCATCACAGCCAAGCTCTTCCTTGCCTGGAGATACAAGTAACCAAAATGTTTC
AGAGAGATCCCGTCTCGGTCCCAGTAGAGGGAGCCCCAGGCTGTTAATAGATGTACCTGAATTCCGTGAAAATCTCAGTC
ATGAACATG---TCCGTAGCCCTGCAGCCGTATCTGGACAGCAAGAAGGAACTAACTATAATCAAGGTCCAGTAACATTG
GAAGCTCTTATGGGACAAGTGACTGGGCAAGTTGAGTCAGCTGAGGCATCCAACTCGAATGAATTGATGTGCCCACTGTG
TAGGGGTGCTGTGAAGGGCTGGGAGATCATCAAAGATGCCAGACAGTACTTGGACGAGAAGCCAAGAAGCTGCTCGCGGG
AAGCATGCGCATTTTCTGGTACCTATGGTGCGCTCCGTAGACATGCCAGGAGGGTGCACCCCACTACCAGGCCTGCTGAT
GTGGACCCGTCAAGGCGACGCGCATGGCACCGCCTGGAGAACCAGCGGGAGTATGGTGACATAATGAGCGCAATCAGGTC
GGCTATGCCTGGGTCAGTTGTGCTTGGAGATTACGTCATTGAAGGTGGGCCAAGTGCAGACGAGCGTGAAGACGGTGGGC
CAAGTGAGCGAAGCGGGTCTCTGTTGACGACGTTCTTTCTATTCCATATGATGAACAGTGGTCCGCTGAGATCAGGAGAT
GAGCCAAGATCCTCATCAAGGGCCCTGAGAAGGCAGAGGCGCCGCTATCTGTGGGGAGAGAACTTGCTAGGCCTCCAATA
T---GACGACGACGATGATGAGGACGAGGATAGCCTAGACGAGGAGGTTCAGAGGCCCAGGACTCGCAGGAGGTTTGTGA
GGTCAAGGTCGGAGGAGCGGCGCTGACGCGTGGGCGACCATGGTAACTAAATCCTTCATCCACCATGAAGTTCTTTACCC
CGTGAATTAGCGATGACCCCTTGCGCGTGATCTTTTGCCATTCCAGCC-AGGGCGCTGGGTGACGTGCTGCTTCG-----
AATGCCTAAAGTGCAGCACGGATCCTTGCACTGGAAGATCCAAGTCAACCGTGTCGCGTTTAAAGGGTTGGATGGTTGAC
CG--------------------CACAAGGCATGGCCATCCTCAGGGCATATGCTGGAACATGTGCTCGCTCGCTGTTGTG
ACCGAAGCTGCTCTCAATGCACCTCGCGTTGTTTGCTCAGCGCGTTACCTATATCCGTATCTATTGTATATATAGTGTTG
GAAGCTAGTACCATTTACTGAATTCGTGCATGTACTGTCTTGCACTTGGTATCTTTGTTCAATTGAAGCTGGTAGGGATT
GCATTTGGCCCTGATGGTTTTATGTGTTATGCTGGTTGTTCTATCTGTTCCGGTTATCGCGCTCCATGGTCTCCTGTCAC
AAATCTTTGGAGTGCCTAGTGTTGTTGGCTGATGGTTGTCTCTTTTCATTCTATTGGAACCCTTGCAGGATTATGCTCTG
CCTGCCGGAAGTGGAGTTTT-----------------GAGCTCGGTCTAAAATCGGGGAAAAAATCAATAAATAAATGAA
T-AAAATTCTGAATTTTTTTTTGGTGAAAACATCGACAAAAGTTTTACGTGCTCATGAAATCTCATCTTGAAATCACATT
CTTGGAAGTCATGGCAAAGAAAACAAACTGATGCTCCAAAAGTGTTATTTTCGAAAGCATTTTGGAGTGTTCTTTTTTTT
GCCACGACTTCCACGAATGTCTTTTCAAGATGAAATTTCGTGGGCACGTAAAACTTTTGTCAATGTTTGCACAGAAAAAA
ATTCAGAATTTCTTGACTGTTTTCTCTTTTTTCCTTTCTAATTTTCCTGTTCATATTTGAGCTCGGGAGC------TGAC
TTTCCCTGCCTGTTC
>chr2B_1
TCACTGTTGCAAAGTAATATAAAGAATATTGTTATTTTACTTCGGCAAAGGAAAAATGTTATTTAGGTTTTTTAAGGGAA
ACATGCTGTATATAGTTAAAATTATCTAGATCGTTTGTCCTAGTATTGGACAAGGATATCTTTTATAACTTTCTGATGAT
ATGATTTATAAT-------TTACTACTACTCCCTCTGTCCTGAATTAGTTGTCTCAGATTTGTCTAGATATGGATGTACC
TAAACACTAAAAAGTGTCTAGATACATCCGTATCTGGACAAATCTGAGACAATTAATTCGGGACGGAGGTAATA------
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--------------------------------------GTATTTTAAGGTGAACTGAATCTTATCAACCGTTTCATTTAC
TTAT----TTGAAGAGCATACGATGAGTTACTAAAACGAGGATAAATAAGTTCAAATGACATGATTGCAATTACACACAT
TTCAGTGCTTTTACACCTGTCGTTTGTGCTACCACTTCATCA-----------------AACCAGAGCACCTGATTATAC
AGGTCTTGGACATAACAGGGGGCTAGGATATATCAAATCATCTAGTCTCTTGTATTAATCTCATCAGTTCCTGTT-AGAG
TTGATTTCACTGCTCTGGTTAGAATAATATGATTGCTGTTGGTCGAACATATGAATCAACTGGATAGTTAGATTCAATAT
CTCCAAGGTGCAAATTAATTATCTTAATTGA----AATCTTAATTGTACACAAGTTTTATTGATAACTTGGATTGCATCG
TCTGAAGCTCAAACTTGTTAGTTTATTGATAACTTGGATGAGCAGAAAACATATAAATCAATTTCGTACCTTCACCGCTG
AAGCTGGTTAACATAAGTTCTTTTTTT--TCCTTTGTATGCCTTTCTGATTTCAACATTTTCTGATACTTGTGTGTATAT
CTCGAATAATCTAGACTCAATGAAGATGTAATAATTGCTATACATGTTTTGATGTCAAAATTGACCAGTTACGTTCTTCT
AATTGGTCCCAGAACAGCATGTCCAAGATGCCAAATCCAGAGAAGAAGTTGTTGAGGATGCCAAGCGCAGATGCCGAGAT
GGCTGCACTGCACAAGGAATGGGATGATGCCCGGTGTCCAATTTGCATGGACCATCCTCACAATGCCGTACTTCTGTTGT
GCAGTTCTCATGACAAAGGATGCAGATCCTACATATGTGATACAAGCTATAGACACTCAAATTGCCTAGACAGATTCAGG
AAAATGAAAGTGAACCGCATGGACAGTTCGTCACAGCCAAGCTCTTCCTTGCCTGGAGATACAAGTAACCAAAATGTTTC
AGAGAGATCCCGTCTCGGTCCCAGTAGAGGGAGCCCCAGGCTGTTAATAGATGTACCTGAATTCCGTGAAAATCTCAGTC
ATGAACATG---TCCGTAGCCCTGCAGCCGTATCTGGACAGCAAGAAGGAACTAACTATAATCAAGGTCCAGTAACATTG
GAAGCTCTTATGGGACAAGTGACTGGGCAAGTCGAGTCAGCTGAGGCATCCAACTCGAACGAATTGATGTGCCCACTGTG
TAGGGGTGCTGTGAAGGGCTGGGAGATCATCAAAGATGCCAGACAGTACCTGGACGAGAAGCCAAGAAGCTGCTCGCGGG
AAGCATGCGCATTTTCTGGTACCTATGGTGCGCTCCGTAGACATGCCAGGAGGGTGCACCCCACTACCAGGCCTGCTGAT
GTGGACCCGTCAAGGCGCCGCGCGTGGCACCGCCTGGAGAACCAGCGGGAGTATGGTGACATAATGAGCGCAATCAGGTC
GGCTATGCCTGGGTCAGTTGTGCTTGGAGATTACGTCATTGAAGGTGGGCCAAGTGCGGACGAGCGTGAAGACGGCGGGC
CAAGTGACCGAAGCGGGTCTCTGTTGACAACGTTCTTCCTATTCCATATGATGAACAGTGGCCCGCTGAGATCAGGAGAC
GAGCCAAGAGCCTCATCAAGGGCCCTGAGAAGGCAGAGGCGCCGCTATCTGTGGGGAGAGAACTTGCTAGGCCTCCAATA
CGACGACGACGACGATGATGAGGACGAGGATAGCCTAGACGAGGAGGTTCAGAGGCCCAGGACTCGCCGGAGGTTCGTGA
GGTCAAGGTCGGAGGAGCGGCGCTGACGCGTGGGCGATCATGGTAACTAAATCCTTCACCCGCCGTGAGGTTCTTTACCC
CATGAATTAGCCATGACTCCTTGCG--TGATCTTTTGCCATGCCAGCCTGAGGCGCTAGGTGACGTGCTGCTTCAGTCAA
AATGCCTGAAGTGCAGCACGGATCCCTGCATTGGAAGATCCAAGTCAACCGTGTCGCGTTTAAAGGGTTGGATTGTTGAA
CAGCATTCAACCCCGTCATTTTCACGAGGCATGGCCGTCCTCAGGGCG--TGCTGGGACGTGTGCTCTGCTCGCGTGCTG
T-------TGCTCATGATGCACCTTGCGTCGTTTGCTCGGCGCGGTACCTATATCCGTATCTACTGTATATATAGTGTTC
GAAGCTAGCACCATTTACTGAATTCATGCATGTACTCTTTTGCACCTGGTATCTTTGTTCAATTGGAGCTGGTAGGGAAT
ACATTTGGCCCTGATGGTTC--TGTGTTATGCTGGTTGTTCTTTCTGTTCCGGTTATCGTGC------------------
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>SNPs
-----------SS------------------------------------------S------------------------
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---------SS------------S--------------------------------------------------------
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----SSSS------------------------------------------------------------------------
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-----------S--------------------------------------------------------------------
-------S-------------------------S----------------------------------------------
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----------------------S----SS---------------------------------------------------
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-------------------------------------------------S------------------------------
-------------------------------------------------------------------------S--S---
-S---------S------------------------------------S-------------------------------
---------SSS----------------------------S---------------------------------------
--------------------------------------------------------S-----------------------
------------------------------------------------------S-------------------------
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--------S--------------------------------------S--------------------------------
------------------------------------------------------------S-------------------
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-----------------------------------------------S--------------------------------
------------------------S-------------------------------------------------------
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----------------------------------------------------------------S---------------
-----------------------------S------------S-----------------------------------S-
---------------------------------S----------------------------------------------
----------------------------S-------------S-------------------------------------
------------------S-------------------------------------------------------------
-------------------------------------------------------------------SSS----------
----------------------------------------S---------------------------------------
S-------------------SSSSSSSSSSSSSSSSS-------S-------------S-----SSS-S--------S--
-S--S-S---------------------------S--------------------------S---------------S--
---------------------------S-------------------------------------------S--------
----S------S-SS--------S-------------------------------------------------S------
-S----S---------S----------------------------S------------------------SSSSSS----
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>forward_56
----------------------------------TGTTACTTCGGCAAAGGAAAAC------------------------
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>reverse_2128
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-----------------------------------------------CCTGTGGGGAGAGAACTTGC-------------
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>forward_1657
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-------------------------------------CAGCTGAGGCATCCAACTCA-----------------------
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>reverse_2881
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ACTGCCGGAAGTGGAGTTTT------------------------------------------------------------
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