>input_sequence_59892
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-------------------------------------------------------------------------ATGGCCT
TGGCTAGGGAGCGCCTCCTAGCCAGCCTGTCGGCTCTTGCGCTGATGTTCGCCGCCTGGGCCTCTCCGGTTGCCGGTGGC
CGCCCGGCGGACCAGCTGCAGATACTGTGGGGGCAGACGAAGGTGCTCAACGACGGCAACGGCGACCAGACCATCGCGCT
GATGCTGGACCACGCCATGGGGTCGGCCTTCAAGTCCAAGACCTCCTACCTCTTTGCCCGGATCGACGTGGACATCAAGC
TCATCCCCAGGAACTCCGCCGGCACCGTCACCACCATATATGTAACTGAC--CATGCCATGTCCATCGTCTCGTCATCCA
TGCATGGCATGCACCAGTTCGTCGCAAACTAAATGGTGTGTATATGTTCTGTGGTGTGGTGCAGATGATCTCGGAGAAGG
ACTGGAAGACCCACGACGAGATCGACCTCGAGTTCCTGGGCAACGCCACCGGCCAGCCCTACACCCTGCACACCAACATC
TTCGCCAACGGCGAGGGCGGCAGGGAGGTGCAGTACCGGCTCTGGTTCGATCCCACCCAAGACTTCCACACCTACTCCAT
CGTCTGGAACACAGATGAGATCCTGTAAGCCTCGCCTTATCGCACACACCAGTACTCTGTTCGACGTGTCTGAAACTCTG
GATGCTTTCAAGTTTCCATGGCATTTATGTTGCT------AAGACATTATCGGGCTGTATCTGCAGGATCCTGGTGGACG
GCGTGCCGATCCGGCAGTTCAAGAACCACTGGGACGCCGGCGTGCCGTTCCCGGTGTACCAGCCGATGCGGCTGTTCGGG
TGCCTGTGGGACGCCGACGACTGGGCGACGCAGGGTGGGCTCGTCAAGACCGACTGGTCGCAGGCGCCATTCGTTGCTTA
CTTCAAGAACTACACCGCCTCCGGGTGCGCCCCGAGCGCCGGCGGCTCGTGGGTGTGCGGCCAGGACCCCTCCGGCTCCG
GCGGCAGCCCCGGCTGGATGGACCGGGCACGGGGAGGAGGGCGGCTGGACGACGACGTGAAGCAGCAGCAGCAGCTGAGG
GAGGTGCAGGGCAAGTACATGATCTACAACTACTGCACCGACAAAAAGAGGTTCCCCAATGGCTTCCCGAAGGAGTGTGG
GCTGGCTTAG----------------------------------------------------------------------
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>chr2D_1_TraesCS2D01G432100
ACTTATGTGATCTTCTTT-TGTCATGCGTGTGCTTACAGGTGGGGCCAATCCATCAGAATTCATCTCGACCAAATCAAAT
GATGGATTAGAGCTAATTGCAATGAATTACACCAATAGATGGTGATTTATGCAGCAAACCTCTAAAATAGGTGTTTTGTG
ATTCCAGTAGTTGGTCGTTTAGGC-ATCTTCAACGCCGACCCTAAAACCACCCTCAACCGTTTAAACCGCACCGTCCGGA
CGTATTTTGTTATTCAACGCGGTCCTGCATTGGTCCGTTCGACAGTCCAAACGCATTTTTTGCG-----TAAACCGAAGA
CAAACTGAGGAGAGGGGTTGCGGGCGTTCGGACCGTTGCCAGGTCCGCGTCTGACTAAACTGGCCTACCAAGAACCTTTT
TCCCGTGCCCGCGCGCTTTCCGGCCCGAAGCCAGCTGCTTCCATTTGGTGCAGAGCGGATGCAACCACGGCGAGCGGTGA
AATATCTTTGCATCAGTATAACACATCAGTTAATCAGTTAATGTTTTAAGTTTTTTAATAGAACAACCAAGTTCAGATAC
CC-CCGCCGCCCGCGGCATATCGTTCCATATTTCCAATGTCTGCTCTGCTGTAGTTCCATCGAATCCAGTCACAGATGTA
CGTACATTGAAGCCACAATGTGTGCCGCAGTTCACTCGTCGCCGGACACGTAACAAACACTTAAACCAGGTGGTCAACTT
CTCGCATTTTTGCCCATCTTGCGTCGTCGTTAGCTG----------TGTGAACCTTCCAACATTTTCTACGCCTCGGTCT
TCACTGAACGAGCAGCCAGCCCATGACTGAACTTGTTTACATCCTCCAAGAATTTAAAGGCGCCGCCGAGCTCGATGCGA
TCGATCCGGCGGCATCTATCCTCATGTG-ATTGACCCCGGTAATCCTGCGGCACCTTCTCAGTCGAGT-----CTGCATA
TATCCTTCACTTGACCGTG---------GCTGCCCCCGCACACTACAGTCACTCACTTCACTCGCCAGGAGCCATGGCCT
TGGCTAGGGAGCGCCTCCTAGCCAGCCTGTCGGCTCTTGCGCTGATGTTCGCCGCCTGGGCCTCTCCGGTTGCCGGTGGC
CGCCCGGCGGACCAGCTGCAGATACTGTGGGGGCAGACGAAGGTGCTCAACGACGGCAACGGCGACCAGACCATCGCGCT
GATGCTGGACCACGCCATGGGGTCGGCCTTCAAGTCCAAGACCTCCTACCTCTTTGCCCGGATCGACGTGGACATCAAGC
TCATCCCCAGGAACTCCGCCGGCACCGTCACCACCATATATGTAACTGAC--CATGCCATGTCCATCGTCTCGTCATCCA
TGCATGGCATGCACCAGTTCGTCGCAAACTAAATGGTGTGTATATGTTCTGTGGTGTGGTGCAGATGATCTCGGAGAAGG
ACTGGAAGACCCACGACGAGATCGACCTCGAGTTCCTGGGCAACGCCACCGGCCAGCCCTACACCCTGCACACCAACATC
TTCGCCAACGGCGAGGGCGGCAGGGAGGTGCAGTACCGGCTCTGGTTCGATCCCACCCAAGACTTCCACACCTACTCCAT
CGTCTGGAACACAGATGAGATCCTGTAAGCCTCGCCTTATCGCACACACCAGTACTCTGTTCGACGTGTCTGAAACTCTG
GATGCTTTCAAGTTTCCATGGCATTTATGTTGCT------AAGACATTATCGGGCTGTATCTGCAGGATCCTGGTGGACG
GCGTGCCGATCCGGCAGTTCAAGAACCACTGGGACGCCGGCGTGCCGTTCCCGGTGTACCAGCCGATGCGGCTGTTCGGG
TGCCTGTGGGACGCCGACGACTGGGCGACGCAGGGTGGGCTCGTCAAGACCGACTGGTCGCAGGCGCCATTCGTTGCTTA
CTTCAAGAACTACACCGCCTCCGGGTGCGCCCCGAGCGCCGGCGGCTCGTGGGTGTGCGGCCAGGACCCCTCCGGCTCCG
GCGGCAGCCCCGGCTGGATGGACCGGGCACGGGGAGGAGGGCGGCTGGACGACGACGTGAAGCAGCAGCAGCAGCTGAGG
GAGGTGCAGGGCAAGTACATGATCTACAACTACTGCACCGACAAAAAGAGGTTCCCCAATGGCTTCCCGAAGGAGTGTGG
GCTGGCTTAGGAATTATCGTTACTACTAG---------GATAGATAGAAGTGATTCTGCTGATGGAGCTGGGTGGGAGA-
-TGCGTGTCTTGGCAAGAACATTATTTCATTCTTCTTTTGGCTATTTACGAACGGCAATTCAGAGTTTGATTTCTGGAGA
AAG-AAAAACAAAAGCAAAAGAAATAGCAGCCATTTCTGGTCATGTGTACTACGATGCAGAGATTAAGGAGGTGTTCGTC
GGTCCTCCAGCTCCCTGAAATCTTAGAATCTGTGGAGCTCCTTTTCCCCCGCTCTGTCATTTTTAGCTACAGCTCCACCA
GCTCCCGAAGCGGACTTGAGGAGTGGAGAGTCTGGGAACAGGCCTTAATTATATATATACTGATTGCGTGAAGATTAAGG
AAGTGTAAGCATCGTACAGTACTAACATAGAGCAAGCAGTTCCATAGAAACCAGTAAACAAACTTCAGCACCGATCGGGA
TTTGCATCCATGGGAGTAAAGACGCCGCTACCTAGCTAGTCAGCACGATGCTTTCGAGTTCCGAGGCCAGTGTAATACTG
ATAATTTATCCAAGCGAAGGCTCTAAAGATGCCGCACACAAACAATCACCAAATAACACCCGAAAAATATATAAAAGCTC
CAAAAGCAATGTCTTCAAGAAGAAAACGATGCACAAGCACAAGTATCATCGTTGCCCGATCCAAGATCTTAAGTTTTCAC
TCTGGAGAAGTCCGAGCTCCCAAAACAATTCCTCCAGAAAGGCAATTGCCAGCCACAACCAATGAAGGTCATATTAGGTT
TTCACCCTGAAAGTCACGGCTAGGCACCCGAGGAGCACCACAAAAAATCGAAGCCACGCCACCACCAAGGAGGGAGAGGA
GTCGTGCCCATGGAAGGCCCCGCCATCGGTAACTTTGAGGACGTGATGTTAAGTGTAAAGATGATGTCGGTAACTTTGAG
GACATGATGTTAGAGGAACATTGATTGGAACATTACCATACCATTAATTGGTTGGAGTTGTG
>chr2B_1
ACTTATGCAATCTTTTTTCTGTCATGCGTGTACTTACAGGTGGGGCCAATCCATCAGAATTCATCTCAACCGAATCAAAT
GATGGATTCGAGCTAACTGCAGTGAATCACACCAATAAATGGTAATTTATGCAACAAACCTCTAGAA-------------
---CCTGTAGTTGGTCGTCTCGGGGATCTTCAACGCCGACCCTC-AACCACCCTCAACCGTCCGGACCATAAGGTCCGGA
CGTGTTTTGTTATTCAACGCGATCCTGCATTGGTCCGTTCGACGGCCCAAACGCAAAAATAATAATTCATAAACCGGAGA
CATACTAGGGAAGGGGGTTGCGCCCGTCCGAACCGTTGCCATGTCCGCTTTTGACTAATCTGGCCCATCAAAAACCTTTT
TCCCGCGCCCGCATGCTTTCTAGCCAGAAGCCAGCTGCCTGCATTTGGCGCAGAGCGGATGCGACCACGGCGAGCGGTGA
AATATATTTGCATCAGTATAACACATCAGTAG--------ATGTTTTAAG-TTTTTAACAGAACAACCAAGTTCAGCTAC
CCTCCGCCGCCCGCGATCTAACCGTCCATATTTCCAATGTCTGCTCTGCTCCAGTTCCATCGAACCCAGTCACAGATGCA
GTAT-ATTGAAGCCACAATGTGTGCCGCAGTTCACTCGTCGCCGGACACGTAACCGACACTTAAACCAGGTTGTCAACTT
CTCGCATCTTTGCCCATCTTGCGTCGCCATTACTG---------ACTGTGAACCCTCCAACATTTTCAATGCCTAGGTCT
TCACTGAACGAGCAGCCAGCCCATGACCGAACTTGTTTACATCCTCCAAGAATTTAAAGGCGCCGCCGAGCTCGATGCGA
TCGATCCGGCGGCATCGATCCTCATGTGCATTGACCCCGGTAATCCTGCCGCACCTTCTCAGTCGAGT-----CTGCATA
TATCCTTCACTTGACCGTGCCCGGCCTCGCTGCCCCCGCACACTACAGTCACTCACTTCACTCCGCAGGAGCCATGGCGT
TAGCTACGGAGGGCCTCCTAGCCAGCCTATCGGCTCTTGCGCTGATGATCGCCGCCTGGGCCTCTCCAGTGGCCGGTGGT
CGCCCGGCGGACCAGCTACAGATACTGTGGGGGCAGACGCAAGTGCTCAACGACGGCAACGGCGACCAGACCATCGAGTT
GATGCTGGACCACGCCATGGGGTCGGCCTTCAAGTCCAAGACCTCCTACCTCTTTGCCAGGATCGACGTGGACATCAAGC
TCATCCCCAGGAACTCCGCCGGCACCGTCACCACCATATATGTAAGTGAC--CATGCCATGTCCATCGTCTCGTCATCCA
TGCACGGCATGCACGAGTTCCTCGCAAATTAATGGTA---TATACGTTGTGTGCTGTGGTGCAGATGATCTCGGAGAAGG
ACTGGAAGACCCACGACGAGATCGACCTCGAGTTCCTGGGCAACGCCACCGGCCAGCCCTACACCCTGCACACCAACATC
TTCGCCAACGGCGAGGGCGGCAGGGAGGTGCAGTACCGTCTCTGGTTCGATCCCACCCAGGACTTCCACACCTACTCCAT
CGTCTGGAACACAGACGAGATCCTGTAAGCCTCACCTTAGTGTACACACCAGCATTCTGCTCGACATGTCTGAAACTCTG
AATGCT----------------------------------AAGATATAATTGGTCTGTTTCTGCAGGATCCTGGTGGACG
GCGTGCCGATCCGGCAGTTCAAGAACCACTGGGACGCCGGCGTGCCTTTCCCGGTGTACCAGCCGATGCGGCTGTTCGGG
TGCTTGTGGAACGCCGACGACTGGGCGACCCAGGGTGGGCGCGTCAAGACGGACTGGTCGCAGGCGCCGTTCATCGCCTA
CTTCCGGAACTACACCGCCTCCGGATGCGCGCCCACCGCCGGCGGCTCGTGGGCGTGCGACCAGAACCCCTCCGGTTCCG
GCTCCAGCTCCGGCTGGATGGACCGGGCACGGGGAGGAGGGCGGCTGGACGACGACGTGAAGCAGCAGCAGCAGCTGAGG
GAGGTGCAGGGCAAGTACATGATCTACAACTACTGCACCGACGAAAAGAGGTTCCCCAATGGCTTCCCGAAGGAGTGTGG
GCTGGCTTAGGAATTATTGTTACTACTAG---------GATCGATAGAAGTGATTCTGATGATGGAGCTGGGTGGGAGA-
-TG--TGTCTTGGCAAGAACATTATTTCATTCTTTTTTTGGCTATTTATGAATGGCAATTCAGAGTTTGATTCATGGAGA
GAAAAAAAATAAAAACAAAAGAAATAGCAACCATTTCTGGTCATTCGTACTACGATGCAGAGATTAA-------------
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------------------------------------------------TTATATATATACTGATTGCGTGAAGATTAAGG
AAGTGTAAGCATCGTAC--TACTAACATAGAGCAAGCTGTTCCATAGAAACCAGTAAACAAAATTCAGCACCGATCGGGA
TTTGCATCCATGGGAGTAAAGACGCCGCTGCCTAGCTAGCCAGCACGATGCTTTCAAGTTCCGAGGCCAGTGTGATACTG
ATAATTTATCCAAGCGAAGGCTCTAAAGATGCCGC---------------------------------------------
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>chr2A_631
TA------------------------------------------------------------------------------
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------------------------------------------------------------------------------CA
GTAT-ATTGAAGCCACAATGTGTGCCGCAGTTCACTCGTCGCCGGACACGTAACCGACACTTAAACCAGGTTGTCAACTT
CTCGCATCTTTGCCCATCTTGCGTCGCCATTAAGCTGTGACTGAACTGTGAACCCTCCAACATTTTCAATGCCTAGGTCT
TCACTGAACGAGCAGCCAGCCCGTGACTGAGCTTGTTTACATCCTCCAAGAATTTAAAGGCGTCGCCGAGCTCGATGCGA
TCGATCCGGCGGCATCGATCCTCATGTG-GTTGACCCCGGTAATCCTGCGGCACCTTCTCAGTCGAGTCTGCACTGCATA
TATCCTTCACTTGACCGTG---------GCTGGCCCCGCACACTACAGTCACTCACTTCACTCGCCAGGAGCCATGGCCT
TGGCTAGGGAGCGCCTCCTAGCCAGCCTATCGGCTCTTGCGCTGATGATCGCCGCCTGGGCCTCTCCGGTTGCCGGTGGT
CACCCGGCGGACCAGCTGCAGATACTGTGGGGGCAGACGAAGGTGCTCAGCGACGGCAACGGCGACCAGACCATCGCGCT
GATGCTGGACCACGCCATGGGGTCGGCTTTCAAGTCCAAGACCTCCTACCTCTTTGCCCGGATCGACGTGGACATCAAGC
TCATCCCCAGGAACTCCGCCGGCACCGTCACCACCATATATGTAAGTGAGATCATGCCATGTCCATCGTCTCGTCATCCA
TGCACGGCATGCACGAGTTCCTGGCAAAGTAATGGTA---CATATGCTGTGTGCTGTGGTGCAGATGATCTCGGAGAAGG
ACTGGAAGACCCACGACGAGATCGACCTCGAGTTCCTGGGCAACGCCACCGGCCAGCCCTACACCCTGCACACCAACATC
TTCGCCAACGGCGAGGGCGGCAGGGAGGTGCAGTACCGCCTCTGGTTCGACCCCACCAAGGACTTCCACACCTACTCCAT
CGTCTGGAACACAGACGAGATCCTGTAAGCCTCGCCTTATTCTACACACCAGTACTCTGTTGGACATGTCTGAAACTCTG
AATGCTTTCAAGTTTCCATGGCATTTACTGTATGTTGCTGAAGGCATTGTCGGGGTGG-TCTGCAGGATCCTGGTGGACG
GCGTGCCGATCCGGCAGTTCAAGAACCACTGGGACGCCGGGGTGCCCTTCCCGGTGTACCAGCCGATGCGGCTGTTCGGG
TGCCTGTGGGACGCAGACGACTGGGCCACGCAGGGCGGGCGCGTCAAGACCGACTGGTCGCAGGCGCCGTTCGTCGCCTA
CTTCCGGAACTACACCGCCTCCGGGTGCGCCCCGAGCGCCGGCGGCTCGTGGGCTTGCGGCCCGGACCCCTCCGGCTCCG
GCGGCAGCAGCGGCTGGATGGACCGGGCACGGGGAGGAGGGCGGCTGGACGACGACGTGAAGCAGCAGCAGCAGCTGAGG
GAGGTGCAGGGCAAGTACATGATCTACAACTACTGCACCGACGAAAAGAGGTTCCCCAATGGCTTCCCGAAGGAGTGTGG
GCTCGCTTAGGCATTATTGTTACTACGTACTAGGATGAGATCGATAGAAGTGATTGTGATGATGGAGCTGGGTGGGAGTT
GTG--CGTCTTGGCAATAACATTATTTCATTCTTCTTTTGGCTATTTATGAACGGCAATTCTTCTTTTC-TTCCTGGAGA
AAG-AAAAACAAAAACAAAAGAAATAGCAACCGTTTCTGGTCATGTGTAATACGATGCAGAGATT---------------
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>SNPs
-------SS-----S----------------S-----------------------------------S---S--------
--------S-------S----S-----S---------S-----S---------S----------S--SSSSSSSSSSSSS
SSS--S------------S-S--S-------------------SS----------------SSSS---SS-SS-------
---S-----------------S---------------------S-S---------SSSS-SSSS------------S---
--S---SS---SS---------SS---S--S----------S------S-S-------S------S-S---S--------
-----S------SS------SS---S------------S-S-------S-------------S-----------------
-----S------------------------SSSSSSSSSS----------S-------S-----------------S---
---------------SSS--S-SS--------------------------SS------------S-------------S-
SSSSS-------------------------------------------------SS---------------S--------
-------S------------------S-S---SSSS------------------S------------S-S----S-----
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----------------S---------------------------------------------------------------
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----------------------------S------------------S-------------------------------S
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---------------------------------------------S----------------------------------
----S---------S-----S-------S---SS-SSSSS--------S----S--------------------------
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--------------------------------------S--------------------S--------------------
---------------S------------------------S-S----------------------S--------------
S--------------------------SSS-SSS------------------------S---------------------
----------------------------------------------S---------------------------------
----------------------------------------S---------------------------S-----S--S--
----SS-----------------------------------------------S--------------------------
--------S-----------------------------------------------------------------------
------------------------------------------S-------------------------------------
-----------------S-----------------------S----------------S---------------------
---SS-------------------------------------------S-----------------------S-------
--------------S--------------S-------------------------------------SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------
-----------------SS------------------S------------------------S-----------------
-----------------------------S---------S---------------S-----------------S------
-----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_386
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----------------------------------------------GCGTCTGACTAAACTGGCCT--------------
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>reverse_1409
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------------------------------------------------CTGTGGTGTGGTGCAGATGA------------
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>forward_755
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---------------ATCTTGCGTCGTCGTTAGCT---------------------------------------------
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>reverse_2441
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----------------------------------------CTTTTCCCCCGCTCTGTCAT--------------------
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