>input_sequence_59877
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------ATGGCGTCTCGTAAGTCCCCCTCCGATCCTGCC
TGCCTTG-TTAGGTTTCCTCTCTTTTTAAAAAAAGAAAAAATTGATCGATGTGAATTGTGATGA-----TGCTTTGGTTT
GGTGTCTCTCTGCTGCAGGCCTCAAGTTTGAGAACTCATGCGAGGTCGGGGTGTTCGCGAGGCTCACCAACGCCTACTGC
CTCGTCCCGGCCGGTGGGGTGGGGAATTTCACCAGGTTGGCTGTCCTCGACTCGATCTGTCATGGTTAATCGCGACCCCC
TCCCCTGGTGGCTTCTTCTCTTCTAATTG-----------GTCCTGTGGTTGCAGTGTGTTTGAGGCCGAGCTCGCCGAC
ACCGTCCCGGTGGTCAAGGCATCCATCGGCGGCATGAGGATCCTCGGGACATTGTGCATGGGCAACAAGAAGGGCCTTTT
CTTCTACCACACACCACCAACGACCAAGGTAAGAAAGAA--AGGTCCTTCCTTGTCCAGTGAGTGAGTCAGCAG-TGACC
TGACATGGGTTTGAAATGCCTGCCTGCCACAGAGCTCCAGCACCTCAAGAATAGCCTGCCTGATGAGGTGGTCGTCCAGC
GTGTCGACGAGCGGCTCTCCGCCCTCGGCAACTGCATTGCTTGCAACGACCACGTGGCTCTCACAAACCCAGATCTCACC
AGGGAAACCGAGGAGATCATCTCGGACGTTCTTGGGGTGGAGGTGTTTAGGCAGACCATCGCAGGGAGCATCCTGGTCGG
CAGCTCCTGCGCCTTCTCCAACAAAGGGGGACTTGTAAGCTACGCTCCTCATCACACCCACGCCAGCTACCTAGGGTTCA
ACCTAGCTCACTGCTTGATTTCTGAAACTCGTCGACCTGACTGTTCGTGTGTGTAGGTTCACCCGCAGACGTCGGTGGAG
GACCTGGACGAGCTGTCGACGCTGCTGCAGGTGCCCCTCGTCGCCGGCACCGTCAACCGGGGGAGCGAGGGCATTGCGGC
CGGCATGGTGGTCAACGACTGGGCGGCCTTCTGCGGTTCCGACACCACGGCCACCGAGCTCTCAGTGGTGGAGAGCGTCT
TCAGGCTGAGGGA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------CGCCCGGCCGG
GGGCATTGGGCGCAGACGTCAGAAAATC----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------CTTGGTT-GAAAGCTGCT------------
-----------------------------------------------------------------------TTCTTTAG-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------
>chr3A_1_TraesCS3A01G191100
GTGTGTGGAGATCTGTAAATAGCAGGTCTAGGATTAGATCGAGTCTTGCCCAAGTGGTGTCTGGCGCTATGCCGTGGTGG
AGCGCGCCGCCGGCGCACGCGAGCTGCGCCTGGTGGCTAGCGTCGGCGTTTCTGATGGTTGCGGTGGCGAGGTGCTGCGT
GCAACCGGAGGAAATGACGGCGGCGACTCCTTCAATAAGCTCGTTGTGTTTCCTGTTAAGGTGGAGGCCCGGCTGCTCTA
CCCTTTCTTTTCAAGCCATCGTGGTGGTGGATGGAGGAAGAAGGAGAGGCGGCGAGCTGGACTTTGCAGTTTGGGAAGGA
GCTCATCCTCAATGGGTTTGAGACGAGGCAACGGCGCCCGCTTCGGCTGTCGGCAGCCGGTCCTCACCGTCTCGCCATTG
AATATGCTGGCCGAAGGGCGGCCCTTTCTCTTCCTCCCGGCCTGGTGCCTAGATGGGAGGCAGTTCATCTCCGAATCGGA
GTCTAAGGCTTCTTCTTCTGCGGTGTTGTGCTATGGGAGAAGCAGCTGCGGAGGTCCCGACGTACCAAGTGCTAACGTCC
CCGGCGACGACGGGATTGGATCCGGTTGGGAGATGATTTGGACCCGATTGCATTTCTTGTTTCCTGTTCGGGGTCCTCCA
TGCAAAAAACAGGGACTGGTCTGTAATTTTCTTTCCTTTGTGTGTCCTGTTGTAAACTACGGTGTGCTAGTGCTACCGAT
CTATGGTTAATGCAGTTTCTGGGTCGCGTGACCCATCTTTTGTTCAAAAAAAAGCAAAAGCCAAGAGCAGATCCGTGGTG
GGCACAAAAACTTGGAGAAAACGTAACCACGGCACGTGCAGCCTGTGATGCGTATTATAAGAGGAGTTCACCTCACCTAG
CCACAACCTCCATCCCCGGAACATCTTGACCAACTGCGCGCACCTCATCGGCCCGCG-------CGCCCGCCCGCTAAAC
CCTACCCTACTCGCCGGCGACAGAGGTTTTCGCGAGCTCGTCCGACAATGGCGTCTCGTAAGTCCCCCTCCGATCCTGCC
TGCCTTG-TTAGGTTTCCTCTCTTTTTAAAAAAAGAAAAAATTGATCGATGTGAATTGTGATGA-----TGCTTTGGTTT
GGTGTCTCTCTGCTGCAGGCCTCAAGTTTGAGAACTCATGCGAGGTCGGGGTGTTCGCGAGGCTCACCAACGCCTACTGC
CTCGTCCCGGCCGGTGGGGTGGGGAATTTCACCAGGTTGGCTGTCCTCGACTCGATCTGTCATGGTTAATCGCGACCCCC
TCCCCTGGTGGCTTCTTCTCTTCTAATTG-----------GTCCTGTGGTTGCAGTGTGTTTGAGGCCGAGCTCGCCGAC
ACCGTCCCGGTGGTCAAGGCATCCATCGGCGGCATGAGGATCCTCGGGACATTGTGCATGGGCAACAAGAAGGGCCTTTT
CTTCTACCACACACCACCAACGACCAAGGTAAGAAAGAA--AGGTCCTTCCTTGTCCAGTGAGTGAGTCAGCAG-TGACC
TGACATGGGTTTGAAATGCCTGCCTGCCACAGAGCTCCAGCACCTCAAGAATAGCCTGCCTGATGAGGTGGTCGTCCAGC
GTGTCGACGAGCGGCTCTCCGCCCTCGGCAACTGCATTGCTTGCAACGACCACGTGGCTCTCACAAACCCAGATCTCACC
AGGGAAACCGAGGAGATCATCTCGGACGTTCTTGGGGTGGAGGTGTTTAGGCAGACCATCGCAGGGAGCATCCTGGTCGG
CAGCTCCTGCGCCTTCTCCAACAAAGGGGGACTTGTAAGCTACGCTCCTCATCACACCCACGCCAGCTACCTAGGGTTCA
ACCTAGCTCACTGCTTGATTTCTGAAACTCGTCGACCTGACTGTTCGTGTGTGTAGGTTCACCCGCAGACGTCGGTGGAG
GACCTGGACGAGCTGTCGACGCTGCTGCAGGTGCCCCTCGTCGCCGGCACCGTCAACCGGGGGAGCGAGGGCATTGCGGC
CGGCATGGTGGTCAACGACTGGGCGGCCTTCTGCGGTTCCGACACCACGGCCACCGAGCTCTCAGTGGTGGAGAGCGTCT
TCAGGCTGAGGGA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------CGCCCGGCCGG
GGGCATTGGGCGCAGACGTCAGAAAATC----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------CTTGGTT-GAAAGCTGCT------------
-----------------------------------------------------------------------TTCTTTAGG
GGAATTTTGCCTTGAGGGATTTTCTCCCTTGCTGTATCTGTGTTTGCCATGAATATTATGAA------------------
---------------------------------------------GTAGTACTT-------------------------T
TAAGCTCGTGATAAGACTTTCAAGTAGCAAAGGCCGGAGGGTTTATCTCTGAAGACCTGAGTTATAAACAAAAATGAGG-
GCACAAATGACAATGCAATAGCCAAATATTGCGAGTCCTACAGTTCTGTTTTTCAGCTCAAGGCCTCTTTGGAGGAATAG
TATAAGTGATATGACAT-----------GCATCTCAATTGTCAATCCTATAGTATAGGGAAAGAGATAGAAAGAGAAGTC
ACTTGATTCATAAGATACGAATTTTTACGTTGGTTCAGACTAATGTCATTTTTCCTTTGAA-------------------
-----------------------ATATGAAGGATTGATTTCAATCCTACACAGGAATAG----------------GAATC
CATTCCTACAAGCTTA-GTGCTGCAAAGAAAATTTTCCTGCAAAATTCCTATCCTTTAGAATCCCTACAGAATTGCTGTG
-AACCCAAGTAAAATTGGCCTAAAGTTTTCTTCATAGGTTGTACCAAAGGAACGCTGCAGATTAGACAAGACCACTACAC
TTTATTATAAGAA---ATTCCAGGAACAAACTTCAATGTCCACATCCATCATACGAGCATCAGTAGAGAATTCCCACAAA
AAGCAATCTAAGGCCCTCAGCCATCGGTCCTTCAAAAATTGCTGGTAAAATAGGGAATATTTACAGGGAAACAAGTAGAA
AGAAACATAATTTAAGGATCAACATAAATAAGAATCTAGGGCAGCAGCTCGATATCTATTCCTGGCAGAAAGTTCAGTAG
TGCATGAGCACCCAAGTGCAAAACAAACACTAGTGGTTCGTTACATGACCAAAACATTATTATCTCAATCATATACTTTA
GCAGAAACCCGTAAGCAGCAAATGTATATTGCATGGCAACGGGATGAACCTAACGGTATTCCAGATCCTACTCGAGCATG
TCAGATAATG---TCTTCTTGTTGAATGGATCGGTAGCAGCAAGT
>chr7D_1
GTGTGTGGAGCTCTGTAAATAGCGGGTCTAGGATTAGATCGAGTCTTGCCCAAGTGGCGTCTGGCGCTATGCCGTGGTGG
AGCG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------CGCCACCAGCGCATGCGAGCTGCACCTGGTGGCTAGCGTCG
GCGTTTCTGATGGCTGTGGTGGCGAGGTGCTGCGTGCAACCAGAGGAAATGACGGCGGCGACTCCTTCAACAAGCTCGCT
GTGTTTGCTGTTAAGGTGGAGGCCCGGCTGCTCTTCCCTTTCTTTTCAGGCCATCATGGTGGTGGATGGAGGAAGAAGGA
GAGGCGGTGAGCTGGACTTTGCAGTTTGGGAAGGAGATCATCCTCAAAGGTGTTTGAGACGAGGCAACGACGCCCACTTC
GGCTGTCGGCAACCGGTCCTCACCGTCTCGCCATTGAATATGCTGGCCGAAGGGCGGTCCTTTCTCTTCCTCCCGGCCTG
GTGCCTAGATGGGAGGCAGTTCATCTCCGAATCGGAGTCTAAGGCTTCTTCTTCTACGGTGTTGTGCTACGGGAGAAGTA
GCTGCGGAGGTCCCGGCGTACCAAGTGGTAACATCCCCGGCGACGACGGGATTGGATCCGGTTG-GAGATGATTTCGACC
CGATTGCATTTCTTGTTTCCTGTTTAGGGTCCTCCATGCAAAAACAGGGACTGGTTT-GTAATTTTCT------------
-----------------------------------------------------------------------TTCCTTTGT
GGGTCCTGTTGT--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AAACTGCAGT---------GTGCTAGTGCTACCGATCTATGGTTAATGC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------AGTTTCTGGGTCG--C--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------GT----GACCCATCTTTTGTTCAAAAAAATAGC------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------
>chr1B_41
----------------------------------------GAGTCTTCCCGTAGTGGAGTCTGGCGTTATGCCGTGGCGT
AGCG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------CGCCGCCGGCGCACGCGAGCTGCGCCCGGTGGCTAGCGGTG
TCGTTCATCATGGTTGTGGCGGTGAGGTGCTGCGTGCAATCGGAGAGAGCGACGCCGGCGACTCCTTCAATAAGCTCGTC
GTCTTCTCTGTGTTGGTGGGGGG-CGGCTGCTTGTCTCCTTCCTCTGTTGCCGCCATGGAGACGGATGGAGCGAGGATGA
GAAGCAGCGAACTGGATCTCACGGATTGGGTAAGAGCTCATTCTCAATGGCTTATGTATCAGGGCTTCGGCG-CCAGCTC
AGCGGTCGGCTGCCGGCCCTCA---TCTCGCCATTGACCTTGCTGGCCGAAGGGCGGCCATCTATCTTCCTCCCGGCCTG
GAGCCTTGAAGGGAGGCAGTTCATCTCTGGTTTGGAGTCCCCAGCTTCTTCTAATGGTAGCGGATGGAGCG---------
GCTGTGGAGATCCCGGCGCACCAAGTGGTAGCGTCCCCGGCGGCGACGGGATTGGTTCTGTTCCAGAGTTGATTAGGACC
CGATTGAGTTTCTTATTTCCTGTTTGGGGTCCTCCATGCAAAAACCAGGGACCTAGTGGTAGTTTCCG------------
-----------------------------------------------------------------------TTTATGTTT
GGGTCCTGTTGT--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AATCTGCTTTGTACTATCACCGTTTAAGAA------------TTAACGC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------AGGTTCTGGGTCCTTC--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------GG----GACCCAACTCTCGTTCAAAAAAAA---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------
>chr3B_771
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------AAAGCAAAAGCCAAGAGCAGATCCGTGGTG
GGCACAAA--CTTGGAGAGAACGTAACCACGGCACGTGCAGCTTGCGCTGCGTATTATAAGAGGAGTTCACCTCACCTAG
CCACAACCTCCATCACCGGAACATCTTGACCAACTGCGCGCACCTCATCGGCC-GCG-------CGCACGCCCAGTAAAC
CCTACCCTACTCGCCGGCGACAGAGGTTTTCGCGAGCTCATGCGACAATGGCGTCCCGTAAGTCCCCCTCCGATCCTGCC
TGCTTTG-TTAGGTTTCCTCTTTTTCTTAAAACAAAAA---TTGATCAA-------TGTGATGA-----TGCTTTGGTTT
GGTGTCTCTCTGCTGCAGGCCTCGAGTTTGAGAACTCGTGCAAGGTCGGGGTGTTCGCGAGGCTCACCAACGCCTACTGC
CTCGTCCTGGCCGGTGGGGCGGGGAATTTCACCAGGTTGGTTGTCCTCGACTCGGTCTGTCATGGTTAATCGCGACCCC-
-----TGGTGGCCTCTTCTCTTCTAATTGGTCCTCTCGTTGTCCTGTGGTTGCAGTGTGTTTGAGGCCGAGCTCGCCTAC
ACCGTCCCAGTGGTCAAGGCATCCATCGGCGGCATGAGGATCCTCGGGACATTGTGCGTGGGCAACAAGAACGGCCT--T
CTTCTACCACACACCACCAACGACCAAGGTAAGAAAGAAAGAGGTCCTTCCTTGTCCAGTGAGTCAGCAGTGACCTGACC
TGGCATGGGTTTCAAATGCCTGCCAT----AGAGCTCCAGCACCTCAAGAATAGCCTGCCTGATGAGGTGGTCGTCCA--
GTGTCGACGAGCGGCTCTCCGCCCTCGGCAAGTGCATTGCTTGCAACGACCACGTGGCTCTCACAAACCCAGATCTCACC
AGGGAAACCGAGGAGATCATCTCGGACGTTCTTGGGGTGGAAGTGTTCAGGCAGACCATCGCAGGGAGCATCCTGGTTGG
CAGCTCCTGCGCCTTCTCCAACAAAGTGGGACTTGTACGCTACGCTCCTCATCACACCCACACTAGCTACCTACGATTCA
AC----CTCACTGCTTGATTTCTGAAACTCGTCGACCTGACTGTTCGTGTGTGTAGGTTCACCACAC-ACGTCGGTGGAG
GACCTGGACGAGCTGTCGACGCTGCTGCAGGTGCCCCTCGTCGTCGGCACCGTCAACCGGGGGAGCGAGGGCATTGCGGC
CGACATGGTGGTCAACGATTGGGCGGCCTTCTGCGGTTCCGACACCATGGCGACCGAGCTCTCAGTGGTGGAGAGCGTCT
TCAGGCTGAGGGA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------CGCCCGGCCGG
GGGCATTGGGCGCAGACGTGAGGAAATC----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------CTTGGTT-GAAAGCTACTCCCTCCGTTTCA
AAATAGATGACTCAACTTTGTACTAACTTTAGTACAAAGTTGAGTCATCTATTTTGGAACGGAGGGAGTACTTTTTTAGG
GGAATTTTGCCTTGGGGG----------------------TGTTAGCCATGAATATTGTGAAATACTTCTTCCGCTTCAA
AATAGATGACTCAACTTTGTACTAAC-------TTTACGGAGGGAGTAGTACTT-------------------------T
TAAGCTCGTGATAAGACTTTCAAGTAGCAA-GGATGGAGGGTTTATCTCTAAAGACCTGAGTTATAAACAAAAATGAGGG
GCACACATGACAATGCAAT---------TTGCGAGTCCTACAGTTCTTTTTTTCAGCTCAAGGCCTCT------------
------TGATATGACAT-----------GTATCTCAATTGTCAATCCTATAGTATAGGGAAAGAGATAGAAAGAGAAGTC
ACTTGATTCATAAGATAC----------------------------------------GAA-------------------
-----------------------ATGTGAAGGATTGACTCCTATCCTACACAGAAATAGAAATACATAGGAATAAGAATC
CATTCCTACAAACTTA-GTGCTGCAAAGAAAAAGTTTCTGCAAAATTCCTATCCTTTAGAATCCCTACAGAATTGCTCT-
AAACCCAAGTAAAGTTGGCCTAAAGTTTTCTTCATAGGTTGTTCCAAAGGAACGTTGCAGATTAGACAAGACCACTACAC
TTTATTATAAGAA---ATTCCAGGAACAAACTTCAATGTCCACATCCATCATACGAGCATCAGTACAGAATTCCCACAAA
AAGCAATTTAAGG----CACCCATCAGTCCTTCAAAAATTGCTGGTAAAATAGGGAATATTTACAAGGAAACAAGTAGAA
AGAGACATAATTTGAAGATCAACATAAATAAGAATCTAGGGCAGCAGCTCGATATCTATTCCTGGCAGAAAATTCAGTAG
TGCATGAGCACCCAAGTGCAAAACAAACACTAGTGGTTCGTTACATGACCAAAACATTATTATCTCAATCATATACTTTA
GCAGAAACCCGGAAGCAG----------TTGCATGGCAACGGGATGAACCTAACGGTATTCCAGATCCTACTCGAGCATA
TCAGATAATGTCTTCTTCTTGTTGAATGGATCGGTAGCAGCAAGT
>chr3D_771
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------AAAGCAAAAGCCAAGAGCAGATCCGTGGTG
GGCATAAA--CTTGGAGAGAACGTAACCACGGCACGTGCAGACTGCGATGCGTATTATAAGAGGAGTTCACCTCCATCAC
CCAAATATATTGAGT--------TCTTGACCAACTGCGCGCACCTCATCGAGCCTGCCTAACCCCGCCCGCCCGCTAAAC
CCTACCCTACTCACCGGCGGCAGAGGTTTTCGTGAGCTCGTCCGACAATGGCGTCCCGTAAGTCCCCCTCCGATCCAGCC
TGCCTTGATCAGATTTCCTCTTTTTCTTAAAAAAAAAA---TTGATCGA-------TGCGATGATGCTTTGGTTTGGTTT
GGTGTCTCTC--------------AGTTTGAGAACTCGTGCGAGGTCGGGGTGTTCGCGAGGCTCACCAACGCCTACTGC
CTCGTCCCGGCCGGTGGGGCGGAGAATTTCACCAGGTTGGTT-------------------------AATCGCGACCCC-
-----TGGTGGCTTCTTGTCTTCTAATTGGTCCTCTCGTTGTCTTGTGGTTGCAGTGTGTTTGAGGCCGAGCTCGCCGAC
ACCGTCCCGGTGGTCAAGGCATCCATCGGCGGCATGAGGATCCTCAGGACATTGTGCGTGGGCAACAAGAAGGGCCT--T
CTTCTACCACACACCACTAACGACCAAGGTAAGAAAGGA--AGGTCCTTCCTTGTCCAGTGAGTGAGTCAGCAG-TGACC
TGACATGGGTTTCAAATGCCTGCCTGCCACAGAGCTCCAGCACCTCAAGAATAGCCTGCCTGATGAGGTGGTCGTCCAGC
GTGTCGACGAGCGGCTCTCCGCCCTCGGCAACTGCATTGCCTGCAACGACCACGTGGCTCTCACAAAACCAGATCTCACC
AAGGAAACCGAGGAGATCATCTCGGACGTTCTTGGGGTGGAGGTGTTCAGGCAGACCATCGCAGGGAGCATCCTGGTCGG
CAGCTCCTGCGCCTTCTCCAACAAAGGGGGACTTGTACGCTACGCTCCTCATCACACCC--------TACCTACGATTCA
AC----CTCACTGCTTGATTTCTGAAACTCGTCGACCTGACTGTGCGTGTGTGTAGGTTCACCCGCAGACGTCGGTGGAG
GACCTGGACGAGCTGTCGACGCTGCTGCAGGTGCCCCTCGTCGCCGGCACCGTCAACCGGGGGAGCGATGGCATCGCGGC
CGGCATGGTGGTCAACGACTGGGCGGCCTTCTGCGGTTCCGACACCACGGCCACCGAGCTCTCAGTGGTGGAGAGCGTCT
TCAGGCTGAGGGA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------CGCCCGGCCGG
GGGCATTGGGCGCCGACGTCAGGAAATC----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------CTTGGTT-GAAAGCTGCT------------
-----------------------------------------------------------------------TTCTTCAGG
GGAATTTTGCCT------------TCCCTTGCTGTATCTGTGTTTGTCATGAAATATTCTCAACTAGTACTCCCTCCGTA
AACAAACAAGTAATGTAAACGCTTTTATATTTGTTTACGGAGGGAGTACTTCGCCAATCTGGATAGCTTCTTCGTAGGAT
TAAGCTCGTGATAAGACTTTCAACTAGCAAAGGCTGGAGGGTTTATCTCTCAAGACCTGAGTTATAAACAATAATGAGGG
GCACAAATGACAATGCGATAGCCAAATGTTGCGAGTCCTACACTTCTGTTTTTCAGCTTAATTCCTCTTTGGAGGAATAG
GAAAAGTGAGATCACTTTAGTTCTCGGAGTATCTCAATTGCCTATAGTATT------------------AAAGAGATGTC
GCTTGATTCATAAGATAT----------------------------------------GAATTTTTAATTTGGTTCTAGA
CTATTGTCCTTTTTTCCTTTGAAATATGAAGGATTTGTTCCTATCCTACATAGGAATAGGAAT-----------------
CATTCCTACAAACTTAAGTGCTGCAAAAAA-----------AAAAATCCTATCCTTTAGAATTCCTACAGAATTGCTCTA
AAACCCAAGTAAAGTTGGCCTAAAATTTTCTTCATAGGTTGTTCCAAAGGAACATTGCAGAATAGACAAGACCACTACAC
TTTATTATAAGAAGAAATTCCAGGAACAAACTTCAATGTCCACATCCATCATACGAGCATCAGTGGAGAATTCCCACAAA
AAGCAATCTAAGGCCATCACCCATCAGTCCTTCAAAAATTGCTGGTAAAATAGGGAATATTTACAGGGAAACAAGTAGAA
AGAGACATAATTTAAGGATCAACATAAATAAGAATCTAGGGCAGCAACTCGATATCGATTCCTGGCAGAAAGTTCAGTAG
TGCATGAGCACCCAAGTGCAAAACAAACACTAGTGGTTCGTTACATGACCAAAACATTATTATCTCAATCATATACTTTA
GCAGAAACCCGTAAGCAGCAAATGTATATTGCATGGCAACGGGATGAACCTAACGGTATTCCAGATCCTACTCGAGCATG
TCAGATAATGTCTTCTTCTTGTTGAATGGATCGGTGGCAGCAAGT
>SNPs
----------S------------S---------------------------------S----------------------
----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------
--------SS--------S--------------------------S----------------------------------
--------------S-----------------------------------------------------------------
-------------------------------------------------------S------------------------
---------------------S---S-S------S---SSS--------SSSSSSS------------------------
-----------------------S-------------S------------------------------------------
-------------------S--------------------S-------------S------------------------S
SSSSS---------------------------------------------------------------------------
---------------------------------------------------------S-------------------SS-
--------------------------------------------------------------------------------
------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
-------------------------------------S-----------------------S-S---------S-S----
--SSSS--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------S---SSSSSS---------------------------------S----------------------
--------------------------------------------------------------------------------
----------------------------------S---------------S-----------------------------
--------------------------------------------------------------------------------
S-S--------------------------S--------------------------------------------------
------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------
---------------------------------------S-S--------------------------------------
-----------S--------------------SS--S----------------------------------------S-S
-------------S----------------------------S-----------S-------------------------
--------------------------------------------------------------------------------
---------------S---S-----S------------------------------------------------------
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------
>forward_315
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------GCTGGACTTTGCAGTTTGGG-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------
>reverse_1283
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--CCCTGGTGGCTTCTTCTCTT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------
>forward_413
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------GCCATTG
AATATGCTGGCCG-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------
>reverse_1822
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GCCAGCTACCTAGGGTTCA
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------
>forward_511
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------CTTCTTCTGCGGTGTTGTGC-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------
>reverse_1834
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------GGGTTCA
ACCTAGCTCACTGC------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------
>forward_1418
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GATCCTCGGGACATTGTGCA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------
>reverse_3536
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------CTCAGCCATCGGTCCTTCAA---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------
