>input_sequence_59801
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--------------------------------------------------ATGGCCTTGGCTAGGGAGCGCCTCCTAGCC
AGCCTATCGGCTCTTGCGCTGATGATCGCCGCCTGGGCCTCTCCGGTTGCCGGTGGTCACCCGGCGGACCAGCTGCAGAT
ACTGTGGGGGCAGACGAAGGTGCTCAGCGACGGCAACGGCGACCAGACCATCGCGCTGATGCTGGACCACGCCATGGGGT
CGGCTTTCAAGTCCAAGACCTCCTACCTCTTTGCCCGGATCGACGTGGACATCAAGCTCATCCCCAGGAACTCCGCCGGC
ACCGTCACCACCATATATGTAAGTGAGATCATGCCATGTCCATCGTCTCGTCATCCATGCACGGCATGCACGAGTTCCTG
GCAAAGTAATGGTA---CATATGCTGTGTGCTGTGGTGCAGATGATCTCGGAGAAGGACTGGAAGACCCACGACGAGATC
GACCTCGAGTTCCTGGGCAACGCCACCGGCCAGCCCTACACCCTGCACACCAACATCTTCGCCAACGGCGAGGGCGGCAG
GGAGGTGCAGTACCGCCTCTGGTTCGACCCCACCAAGGACTTCCACACCTACTCCATCGTCTGGAACACAGACGAGATCC
TGTAAGCCTCGCCTTATTCTACACACCAGTACTCTGTTGGACATGTCTGAAACTCTGAATGCTTTCAAGTTTCCATGGCA
TTTACTGTATGTTGCTGAAGGCATTGTCGGGGTGG-TCTGCAGGATCCTGGTGGACGGCGTGCCGATCCGGCAGTTCAAG
AACCACTGGGACGCCGGGGTGCCCTTCCCGGTGTACCAGCCGATGCGGCTGTTCGGGTGCCTGTGGGACGCAGACGACTG
GGCCACGCAGGGCGGGCGCGTCAAGACCGACTGGTCGCAGGCGCCGTTCGTCGCCTACTTCCGGAACTACACCGCCTCCG
GGTGCGCCCCGAGCGCCGGCGGCTCGTGGGCTTGCGGCCCGGACCCCTCCGGCTCCGGCGGCAGCAGCGGCTGGATGGAC
CGGGCACGGGGAGGAGGGCGGCTGGACGACGACGTGAAGCAGCAGCAGCAGCTGAGGGAGGTGCAGGGCAAGTACATGAT
CTACAACTACTGCACCGACGAAAAGAGGTTCCCCAATGGCTTCCCGAAGGAGTGTGGGCTCGCTTAG-------------
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>chr2A_1_TraesCS2A01G434300
CCGTGCTCCGGCTTGGGGTCAAGCCGGCTCTCAAGGAGGGAGGAATGTCAGCACACCGGGTAGCGCTTCAAATGATCTGG
CAACAGCGACAACAGGTGACGACACTATTCATCATCCGACAAGCAGAGAAGAAGCGGCAGAGTTCAAAACTTCTCGTGGG
CCTGCGGTGCGGCCCACTCGGGTGAAGACGAAGCCCAAATGGCACGCCGGCCCGGAATGGCTGTAGTTTAAATACCCTTG
TAACGTTCGGATGGATTGGCTTTGGACGGACGGCGGCTTCGGCCGATTGTAATAGCTGTAGTACAGAGGGAGGTTGGGAG
GATAAACACGCCATCGAATTTTCCCCATTCCGCCATGAACCCTAGCTTCCACGCTTAGATCGATCGCGACTCTTACACAA
ACTTTGCTAAGTTTGACCAAATTTATATTAGAAATTATTAGCATCTATAATATCTAATAAATATAATATGAAAATATATT
CCAAGATGAATCTAATGATATTGGTGTTGTTATATGTGAATGTCTATAATTTTTTATATAAATTTGATCAAAGTTGGATG
AAATTGACTTCGAACAAACCTAATATGCAGAGTAAAAAGGACCGGAGTGAGTACTACAGTATATTGAAGCCACAATGTGT
GCCGCAGTTCACTCGTCGCCGGACACGTAACCGACACTTAAACCAGGTTGTCAACTTCTCGCATCTTTGCCCATCTTGCG
TCGCCATTAAGCTGTGACTGAACTGTGAACCCTCCAACATTTTCAATGCCTAGGTCTTCACTGAACGAGCAGCCAGCCCG
TGACTGAGCTTGTTTACATCCTCCAAGAATTTAAAGGCGTCGCCGAGCTCGATGCGATCGATCCGGCGGCATCGATCCTC
ATGTG-GTTGACCCCGGTAATCCTGCGGCACCTTCTCAGTCGAGTCTGCACTGCATATATCCTTCACTTGACCGTG----
-----GCTGGCCCCGCACACTACAGTCACTCACTTCACTCGCCAGGAGCCATGGCCTTGGCTAGGGAGCGCCTCCTAGCC
AGCCTATCGGCTCTTGCGCTGATGATCGCCGCCTGGGCCTCTCCGGTTGCCGGTGGTCACCCGGCGGACCAGCTGCAGAT
ACTGTGGGGGCAGACGAAGGTGCTCAGCGACGGCAACGGCGACCAGACCATCGCGCTGATGCTGGACCACGCCATGGGGT
CGGCTTTCAAGTCCAAGACCTCCTACCTCTTTGCCCGGATCGACGTGGACATCAAGCTCATCCCCAGGAACTCCGCCGGC
ACCGTCACCACCATATATGTAAGTGAGATCATGCCATGTCCATCGTCTCGTCATCCATGCACGGCATGCACGAGTTCCTG
GCAAAGTAATGGTA---CATATGCTGTGTGCTGTGGTGCAGATGATCTCGGAGAAGGACTGGAAGACCCACGACGAGATC
GACCTCGAGTTCCTGGGCAACGCCACCGGCCAGCCCTACACCCTGCACACCAACATCTTCGCCAACGGCGAGGGCGGCAG
GGAGGTGCAGTACCGCCTCTGGTTCGACCCCACCAAGGACTTCCACACCTACTCCATCGTCTGGAACACAGACGAGATCC
TGTAAGCCTCGCCTTATTCTACACACCAGTACTCTGTTGGACATGTCTGAAACTCTGAATGCTTTCAAGTTTCCATGGCA
TTTACTGTATGTTGCTGAAGGCATTGTCGGGGTGG-TCTGCAGGATCCTGGTGGACGGCGTGCCGATCCGGCAGTTCAAG
AACCACTGGGACGCCGGGGTGCCCTTCCCGGTGTACCAGCCGATGCGGCTGTTCGGGTGCCTGTGGGACGCAGACGACTG
GGCCACGCAGGGCGGGCGCGTCAAGACCGACTGGTCGCAGGCGCCGTTCGTCGCCTACTTCCGGAACTACACCGCCTCCG
GGTGCGCCCCGAGCGCCGGCGGCTCGTGGGCTTGCGGCCCGGACCCCTCCGGCTCCGGCGGCAGCAGCGGCTGGATGGAC
CGGGCACGGGGAGGAGGGCGGCTGGACGACGACGTGAAGCAGCAGCAGCAGCTGAGGGAGGTGCAGGGCAAGTACATGAT
CTACAACTACTGCACCGACGAAAAGAGGTTCCCCAATGGCTTCCCGAAGGAGTGTGGGCTCGCTTAGGCATTATTGTTAC
TACGTACTAGGATGAGATCGATAGAAGTGATTGTGATGATGGAGCTGGGTGGGAGTTGTG--CGTCTTGGCAATAACATT
ATTTCATTCTTCTTTTGGCTATTTATGAACGGCAATTCTTCTTTTC-TTCCTGGAGAAAG-AAAAACAAAAACAAAAGAA
ATAGCAACCGTTTCTGGTCATGTGTAATACGATGCAGAGATTTGTTAATTATATATACTGATTCCGTGAAGATTAAAGAG
TGGACACGTACCAACGCATGGTCATGAGTGTAAGCACGGTAGCACAGAGCAGTTTTC-------CCATAGAAACAAGTAA
ACAAAATTCTACACCGATCGGG-----------------TAAAGACGCCGCTACCTGGCTAGCTAGTAGTACGATGCTTC
CGAGTTCCGAGGCTAGTGTG------ATAATTTATCCAAGCGAAGGTTCTAAAGATGCCGCGATCTAGCTTAGCTAGCAC
GATTCTTCGGAGCTCAATGTGGTACTCCCTCCGGTCTCAAACGGTATCTAGCATTGAGATATGCCTAACTACATCCAGAT
AACTAATGTAGATTGAAGGGAGTAAAATTATTAGAGCAAAATCCAAGTGAAATCTTAGAGGGGCCCTCGCGTTCGTGCTG
GGTGGTGGCTTCAGTACCTCGGCAATGGCTAAGAAGAACGGAGCAGGACAGGCCTTGGCAAGGATTGCCATTCGTCTCGG
ATGACATAGCTACACATATCTTTGACAGCTTGGTGAATGTTAAGTTGGGAGATGGCAAAAAGGTGTTGTTCTGCCGTGAC
CGATGGACTATTTTTTTTTTGTTTTTGAAAAAAAAAACATGTTAATGTCGCAAAATATCAATTACATCTAGCCTCTGCAT
GACAAGCGACATCCAAAATGCACACAGTCAAAGAAAACATCTAGAATGCACACAGTCAAAGAAAAAAATAGAAAAGAAAG
AAAAAAAACAAAGGTCCTGCCACATGATCAACTTTCTCAGCAACTAGACGCAAACCATCAC
>chr2D_615
TACGTAC-------------------------------------------------------------------------
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--------------------------------------------------------------ATTGAAGCCACAATGTGT
GCCGCAGTTCACTCGTCGCCGGACACGTAACAAACACTTAAACCAGGTGGTCAACTTCTCGCATTTTTGCCCATCTTGCG
TCGTCGTTAGCTG----------TGTGAACCTTCCAACATTTTCTACGCCTCGGTCTTCACTGAACGAGCAGCCAGCCCA
TGACTGAACTTGTTTACATCCTCCAAGAATTTAAAGGCGCCGCCGAGCTCGATGCGATCGATCCGGCGGCATCTATCCTC
ATGTG-ATTGACCCCGGTAATCCTGCGGCACCTTCTCAGTCGAGTCTGC-----ATATATCCTTCACTTGACCGTG----
-----GCTGCCCCCGCACACTACAGTCACTCACTTCACTCGCCAGGAGCCATGGCCTTGGCTAGGGAGCGCCTCCTAGCC
AGCCTGTCGGCTCTTGCGCTGATGTTCGCCGCCTGGGCCTCTCCGGTTGCCGGTGGCCGCCCGGCGGACCAGCTGCAGAT
ACTGTGGGGGCAGACGAAGGTGCTCAACGACGGCAACGGCGACCAGACCATCGCGCTGATGCTGGACCACGCCATGGGGT
CGGCCTTCAAGTCCAAGACCTCCTACCTCTTTGCCCGGATCGACGTGGACATCAAGCTCATCCCCAGGAACTCCGCCGGC
ACCGTCACCACCATATATGTAACTGAC--CATGCCATGTCCATCGTCTCGTCATCCATGCATGGCATGCACCAGTTCGTC
GCAAACTAAATGGTGTGTATATGTTCTGTGGTGTGGTGCAGATGATCTCGGAGAAGGACTGGAAGACCCACGACGAGATC
GACCTCGAGTTCCTGGGCAACGCCACCGGCCAGCCCTACACCCTGCACACCAACATCTTCGCCAACGGCGAGGGCGGCAG
GGAGGTGCAGTACCGGCTCTGGTTCGATCCCACCCAAGACTTCCACACCTACTCCATCGTCTGGAACACAGATGAGATCC
TGTAAGCCTCGCCTTATCGCACACACCAGTACTCTGTTCGACGTGTCTGAAACTCTGGATGCTTTCAAGTTTCCATGGCA
TTTATGTTGCT------AAGACATTATCGGGCTGTATCTGCAGGATCCTGGTGGACGGCGTGCCGATCCGGCAGTTCAAG
AACCACTGGGACGCCGGCGTGCCGTTCCCGGTGTACCAGCCGATGCGGCTGTTCGGGTGCCTGTGGGACGCCGACGACTG
GGCGACGCAGGGTGGGCTCGTCAAGACCGACTGGTCGCAGGCGCCATTCGTTGCTTACTTCAAGAACTACACCGCCTCCG
GGTGCGCCCCGAGCGCCGGCGGCTCGTGGGTGTGCGGCCAGGACCCCTCCGGCTCCGGCGGCAGCCCCGGCTGGATGGAC
CGGGCACGGGGAGGAGGGCGGCTGGACGACGACGTGAAGCAGCAGCAGCAGCTGAGGGAGGTGCAGGGCAAGTACATGAT
CTACAACTACTGCACCGACAAAAAGAGGTTCCCCAATGGCTTCCCGAAGGAGTGTGGGCTGGCTTAGGAATTATCGTTAC
TACTAG---------GATAGATAGAAGTGATTCTGCTGATGGAGCTGGGTGGGAGA--TGCGTGTCTTGGCAAGAACATT
ATTTCATTCTTCTTTTGGCTATTTACGAACGGCAATTCAGAGTTTGATTTCTGGAGAAAG-AAAAACAAAAGCAAAAGAA
ATAGCAGCCATTTCTGGTCATGTGTACTACGATGCAGAGATT--------------------------------------
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>chr2B_617
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--------------------------------------------------------CAGTATATTGAAGCCACAATGTGT
GCCGCAGTTCACTCGTCGCCGGACACGTAACCGACACTTAAACCAGGTTGTCAACTTCTCGCATCTTTGCCCATCTTGCG
TCGCCATTACTG---------ACTGTGAACCCTCCAACATTTTCAATGCCTAGGTCTTCACTGAACGAGCAGCCAGCCCA
TGACCGAACTTGTTTACATCCTCCAAGAATTTAAAGGCGCCGCCGAGCTCGATGCGATCGATCCGGCGGCATCGATCCTC
ATGTGCATTGACCCCGGTAATCCTGCCGCACCTTCTCAGTCGAGTCTGC-----ATATATCCTTCACTTGACCGTGCCCG
GCCTCGCTGCCCCCGCACACTACAGTCACTCACTTCACTCCGCAGGAGCCATGGCGTTAGCTACGGAGGGCCTCCTAGCC
AGCCTATCGGCTCTTGCGCTGATGATCGCCGCCTGGGCCTCTCCAGTGGCCGGTGGTCGCCCGGCGGACCAGCTACAGAT
ACTGTGGGGGCAGACGCAAGTGCTCAACGACGGCAACGGCGACCAGACCATCGAGTTGATGCTGGACCACGCCATGGGGT
CGGCCTTCAAGTCCAAGACCTCCTACCTCTTTGCCAGGATCGACGTGGACATCAAGCTCATCCCCAGGAACTCCGCCGGC
ACCGTCACCACCATATATGTAAGTGAC--CATGCCATGTCCATCGTCTCGTCATCCATGCACGGCATGCACGAGTTCCTC
GCAAATTAATGGTA---TATACGTTGTGTGCTGTGGTGCAGATGATCTCGGAGAAGGACTGGAAGACCCACGACGAGATC
GACCTCGAGTTCCTGGGCAACGCCACCGGCCAGCCCTACACCCTGCACACCAACATCTTCGCCAACGGCGAGGGCGGCAG
GGAGGTGCAGTACCGTCTCTGGTTCGATCCCACCCAGGACTTCCACACCTACTCCATCGTCTGGAACACAGACGAGATCC
TGTAAGCCTCACCTTAGTGTACACACCAGCATTCTGCTCGACATGTCTGAAACTCTGAATGCT-----------------
-----------------AAGATATAATTGGTCTGTTTCTGCAGGATCCTGGTGGACGGCGTGCCGATCCGGCAGTTCAAG
AACCACTGGGACGCCGGCGTGCCTTTCCCGGTGTACCAGCCGATGCGGCTGTTCGGGTGCTTGTGGAACGCCGACGACTG
GGCGACCCAGGGTGGGCGCGTCAAGACGGACTGGTCGCAGGCGCCGTTCATCGCCTACTTCCGGAACTACACCGCCTCCG
GATGCGCGCCCACCGCCGGCGGCTCGTGGGCGTGCGACCAGAACCCCTCCGGTTCCGGCTCCAGCTCCGGCTGGATGGAC
CGGGCACGGGGAGGAGGGCGGCTGGACGACGACGTGAAGCAGCAGCAGCAGCTGAGGGAGGTGCAGGGCAAGTACATGAT
CTACAACTACTGCACCGACGAAAAGAGGTTCCCCAATGGCTTCCCGAAGGAGTGTGGGCTGGCTTAGGAATTATTGTTAC
TACTAG---------GATCGATAGAAGTGATTCTGATGATGGAGCTGGGTGGGAGA--TG--TGTCTTGGCAAGAACATT
ATTTCATTCTTTTTTTGGCTATTTATGAATGGCAATTCAGAGTTTGATTCATGGAGAGAAAAAAAATAAAAACAAAAGAA
ATAGCAACCATTTCTGGTCATTCGTACTACGATGCAGAGATTAATTA--TATATATACTGATTGCGTGAAGATTAAGGA-
--------------------------AGTGTAAGCATCGTACTACTAACATAGAGCAAGCTGTTCCATAGAAACCAGTAA
ACAAAATTCAGCACCGATCGGGATTTGCATCCATGGGAGTAAAGACGCCGCTGCCTAGCTAGCC---AGCACGATGCTTT
CAAGTTCCGAGGCCAGTGTGATACTGATAATTTATCCAAGCGAAGGCTCTAAAGATGCCGCGATCT-GCTTAGGTAGCAC
GATCCTTCCAAGCTGAACGTGGTACCCTCCG-------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------
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---------SSSSSSSSSSSS----------------------------------------------------------S
-------S-------------------------------S----------------------------------------
------S------------------------------------------SSSSS--------------------------
---------S----------------------------------------------------------------------
----------------------------------------------------------S---------------------
--------------------------S-----------------------------------------------------
----S---------------------------------------------------------------------------
--------------------------SSS--------------------------------------------------S
-----S-----------S-----S--------------------------------------------------------
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---------------S-----------S------S---------------------------------------------
------------------S-------------------S-----------------------------------------
----SSS-SSSSSSSSS---S----S-----S--S---------------------------------------------
-----------------S-----S-----------------------------------------------S--------
---S--------S-------------------------------------------------------------------
-------------------------------S-------S-------------------------SS-------------
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------------------------------------------------------------S-------S-----------
---SSSSSSSSSSSS-----------------S----------------------SSS----S----------S------
--------------------------------------SSSS---S----------------------------------
---------S----------------S---------------SS---SS--------------S------------S--S
SSSSSSSSSSSSSSSSSSSSSSSSSS----------SS---SS--SS-SSSSSSSSS-----------------S-----
---------SS-----------------------------------------S---S------SSSS--S---------S
-S-----------S--------------------------------S-------------------S------S------
---S----SS----S--S-------S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_261
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-AACGTTCGGATGGATTGGCT-----------------------------------------------------------
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>reverse_2193
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--------------------------------GTGATGATGGAGCTGGGTGG----------------------------
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