>input_sequence_59791
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----------------------------------------------------ATGGGGTCGGTGTCCCTGAAGCTGCCGG
CGTCCCGCCGCCGCCACGGCGGGCCCCTCTCCTGCCTCTGCTCCCCGGCGCCGCTCAACCTCCTCATGCTGCTCTCCCTC
CTCTGCACCAACCTCCTCGCCTTCTTCGCCTTCTTCGCCGCCCCTCCCCGCCACGACCCCGCCGCCAGCACAACCCCCAC
C------TCCAACCTCTCCGCCCACGTCGCCGCCATCGCGCTCGAGATCGGCGGCGCGTCCTCCTCCTCCGGCGCCCGCC
TCCCGGACGGCCTGCCCCCGGAGCTGCTCCTCTTCCTCACCCCGCACGCGCTGCCGCTCGGCCGCGACGCGCGCACGGGG
CTCACCCACATGCCGGCCTCCGTCGCGGCCTCCTGCCTCCGGTCCCCGTCCGCGCTGGCGCTCCTCTCGGCCTTCATGTC
CTACGCGCCCCACTCCGCCTGCCCGCGCAACGCCACCCTCCCGCGCCGCCTCGTCTCCAAGGGCTGCGAGCCGCTGCCCC
GCCGCCGGTGCCTCTCCCGCGGGCCCCGCGCCCCGCTCCCGGCCTCCGGCATGGGCCTCGACCACCGCCGCTGGGCCGGC
CCCGCGCGCGGCGGC---CACGAGTTCCTCGCCGACGACGTGCTGCGCCTCAGCGCGTCCAAGATCCGGATCGGCCTCGA
CGTCGCCGGCGGCGCCGCCAACTTCGCCGCCCGGATGAGGGAGCGCGGGGTCACCGTCGTCACCTCCGTGCTCGACGGCG
CCGGGAAACCGATGAACGAGTTCGTGGCGGCGAGGAGCCTGTTCCCGCTGCTGCTCTCGCCGGCGCACCGGTTCCCCTTC
TACGACGGGGTGTTCGACCTGGTGCACGTGGGCACCGCGGCGCTGGACGAGGCCGGGGCGCCCGCGATGGGGCAGGCGGC
GACGCCGGAGGCGCTGGAGTTCTTCATGTTCGACGTCGACCGGGTGCTGCGCGCCGGCGGGCTGCTCTGGATCGACAGCT
ACCTGTGCCAGAGCGAGGAGAAGAGGCGGGTGGTTGCCAAGCTCATTGACAGGTTTGGTTACAAGAAGCTCAAGTGGGTC
GCCGCAGAGAAGGCCGGTGGCGCGGCGACATCAACCTACCTCTCCGTGGTGTTGCGAAAGCCGGCAAGAAGCTGA-----
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>chr7A_1_TraesCS7A01G082300
GTGGCAAATTTGCCATGGGGGAAACAACTAAAGTAAGCACAATTTGCCATGGCAAAAATCAACAATGGTCATACTATGAC
ATGGCAAAACTATGACAAAAATACTCATAGTTCTCAACCGACGTGGCAAAAACCTATGACAAAAACCATGACATGGCAAA
ACAGTAAAAACTGACGACAAAACATGACAAAGCTCTTGTGAATGGTGCGAAGGCAAGTGGATGCGTTGTGTTTTCCCCAA
TCAATTTCCTTTGCCCGACGTAGCTGCTGTCCTCTGCTAGAAGATTCACGCTTAAATCGATCGAACGGTTAAAAAGACGT
TCGTCCCTACTCCCTCCGTCTTTTAAAAAGTGTATTTTCAACTTTTTTGGAAAGTCAAACTTTTTTATATTTGACCATGT
TTACATAATAATACATCAACATTTATGCCATCAAATTAGTAGCATTAGATTTATAATAAAATATACTTTAATCATATACC
TATTGGATTTCACAAACATTGATATATTTTTGCATAAACTTGGTCAAATTTTGAGATAGTTTGAGCCTCCAATAAAATTG
AAAGTACACTCTTTAAAGGGTGGAGGGAGTATTTCATCTCCTACAGTTCCGCGCTCGCAGTTTGGTCAAAAAAGTTAAAC
CTAATCCAACAAACAATGCAAGGAATCTC-TAAAAACTTTAAAAAA--TGAATTAGGCCAAACCTAGAACCTGATGTATT
TT-AGAACA-AAAGAAATGTGTACTATGTTTGGGATAACAAATAAATTAAGTTATCTACGAGACCGGATGTCACACACAA
CGACAACCCCCTCTGTCCTCGCTATCTCACTCACTCCCAGAGTCCCCACTCCACTCGCTCTCGCTGAGCAAGCCGGCGCC
CGGAGCAGAGCCCGAGATCCCTCGCCA-----CCGCGCCGGAGCTCCCACTAGCCGAGCTCGCAAAAGCCGCTGCCTTCC
CTCCCTCTCCTCGCGCGCTCGGGGGA--GCACCGGAGCCGGCGGCGCGCGCCATGGGGTCGGTGTCCCTGAAGCTGCCGG
CGTCCCGCCGCCGCCACGGCGGGCCCCTCTCCTGCCTCTGCTCCCCGGCGCCGCTCAACCTCCTCATGCTGCTCTCCCTC
CTCTGCACCAACCTCCTCGCCTTCTTCGCCTTCTTCGCCGCCCCTCCCCGCCACGACCCCGCCGCCAGCACAACCCCCAC
C------TCCAACCTCTCCGCCCACGTCGCCGCCATCGCGCTCGAGATCGGCGGCGCGTCCTCCTCCTCCGGCGCCCGCC
TCCCGGACGGCCTGCCCCCGGAGCTGCTCCTCTTCCTCACCCCGCACGCGCTGCCGCTCGGCCGCGACGCGCGCACGGGG
CTCACCCACATGCCGGCCTCCGTCGCGGCCTCCTGCCTCCGGTCCCCGTCCGCGCTGGCGCTCCTCTCGGCCTTCATGTC
CTACGCGCCCCACTCCGCCTGCCCGCGCAACGCCACCCTCCCGCGCCGCCTCGTCTCCAAGGGCTGCGAGCCGCTGCCCC
GCCGCCGGTGCCTCTCCCGCGGGCCCCGCGCCCCGCTCCCGGCCTCCGGCATGGGCCTCGACCACCGCCGCTGGGCCGGC
CCCGCGCGCGGCGGC---CACGAGTTCCTCGCCGACGACGTGCTGCGCCTCAGCGCGTCCAAGATCCGGATCGGCCTCGA
CGTCGCCGGCGGCGCCGCCAACTTCGCCGCCCGGATGAGGGAGCGCGGGGTCACCGTCGTCACCTCCGTGCTCGACGGCG
CCGGGAAACCGATGAACGAGTTCGTGGCGGCGAGGAGCCTGTTCCCGCTGCTGCTCTCGCCGGCGCACCGGTTCCCCTTC
TACGACGGGGTGTTCGACCTGGTGCACGTGGGCACCGCGGCGCTGGACGAGGCCGGGGCGCCCGCGATGGGGCAGGCGGC
GACGCCGGAGGCGCTGGAGTTCTTCATGTTCGACGTCGACCGGGTGCTGCGCGCCGGCGGGCTGCTCTGGATCGACAGCT
ACCTGTGCCAGAGCGAGGAGAAGAGGCGGGTGGTTGCCAAGCTCATTGACAGGTTTGGTTACAAGAAGCTCAAGTGGGTC
GCCGCAGAGAAGGCCGGTGGCGCGGCGACATCAACCTACCTCTCCGTGGTGTTGCGAAAGCCGGCAAGAAGCTGAAATCA
TTC---ACAAGGATTGTTCAGTCCAGGCTCCTTGATCAGAGGTACGACGACGGTACCTTCAAATTGTTTGTAGCTCGCAG
AGTTTGATGAGGGGAATGTGAATGTGAATGCCGTATAGGTGCCACAGAATTTTTTAGATTACGGAAGAAACCGGTGCTAC
GGATTAGCTTGATTCCATTGGTTGTTGAATGTTGAGAGATAGTGACTGAAAATAACTGCAAGATTGTACACCTCTTCTAC
AT------------------------------------------------------------------------------
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----TGGTTGTTGAATGTTGAGAGATGGTGACTGAAAATAACTGCAAGATTGTACTCCCTCCGATTCATATTACTTGTCG
CTCAAATGGAAGTATCTAGACGTCCTTTTCTAAAAAAAAAATGGAAGTATCTAGACGTACTTCAGTGCTAGATACATCCA
TTTGAGCGACACGAAATATGGATCAGAGGGAGTTTCTACATTTGTTGATGCTATTAGATCGGACACAAGCCGTGCAGTGC
TACTTTTGTTGCTCTATTGATGAGTTGCAATTTGTGGAAGAGGTTAGCAAATGGTGTACACTGTACTGATCTTCCATTTC
AGGAAGAACGCGAAATTAAGTGACGCTGTTCGAATCGAGCTAGCTACCCATGATATGGTCCATCCAGGTCTATCATTGAT
AGTATGTTGTGCAGCTCCTTTCAATCCATCTGTCTATCATTAATTCCCATCTAGCTTAGGCAAACCTGCATAAGCAAAAT
AGTCCAAAAATTGTTTATCGTATTTATCGCAAT--AATTATTAACTGACAAAATTATTGACATCTTGTGCTTGAATCTTG
ATTACGAATAGCTTTTATTTTCTGAAACAATATATGTTTTGTGCTAATTTGCGTGTCATGCAAAAACTATCATGTCATAT
TTTGTTGTTTTTCTATTTGACACTGGCCTACAGATATGAATTCATTATAGTTAGTTATATGAGTTTACCGTGTATCAGAG
TTATTATAT-GACCTATCCCTATCCAATTGCACTAATTTATAG
>chr7D_590
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-----------------------------TATTTCATCTCGTAAAATTCCACGCTTGCAGTTTGGTCAAGAAAGTTAGAC
CTAATCCAACAAACAATACAAGGAATCTC-TAAAAACTTTTAAAAATTTGAATTAGGCCAAACCTAGAACCTGATGTATT
TT-AGAACTAAAAGAAA--TGTACTGTGTTTGGGATAACAAATAAATTAAGGTATCTACGAGACCGGATGTCATACACAA
CGACAGCCCCCTTGGTCCTCGCTATCTCACTCCCCAGTCCCCACTCCACTCCACTCGCTCTCGCTGAGAAAGCCGGCGCC
CGGAGTGGAGCCCGAGATCCCTCCCGGCCGCGCCGTGCCGGAGCTCCCACCAGCCGAGCTCGCAAAAGCCGCTGCCTTCC
CTCCCTTTTCTCGCGCGCTCGGGGGCGGGCACCGGAGCCGGCGGCGCGCGCCATGGGGTCCGTGTCCCTGAAGCTGCCGG
CGTCCCGCCGCCGCCACGGCGGGCCCCTCTCCTGCCTCTGCTCCCCGGCGCCGCTCAACCTCCTCATGCTTCTCTCCCTC
CTCTGCACCAACCTCCTCGCCTTCTTCGCCTTCTTCGCCGCCTCCCCCCGCCACGACCCCGCCGCCAGCGCAATCCCCTC
CTCC------AACCTCTCCGCGCACGTCGCCGCCATCGCGCTCGAGATCGGCGACGGCG---CCTCCTCCGGCGCCCGCC
TCCCGGACGGCCTGCCCCCGGAGCTGCTCCTCTTCCTCACCCCGCACGCGCTGCCGCTCGGCCGCGACGCGCGGACGGGG
CTCACCCACATGCCGGCCTCCGTCGCCGCCTCCTGCCTCCGGTCCCCGTCCGCGCTGGCGCTCCTCTCGGCCTTCATGTC
CTACGCGCCCCACTCCGCCTGCCCGCGCAACTCCACCCTCCCGCGCCGCCTCGTCTCCAAGGGCTGCGAGCCGCTCCCCC
GCCGCCGGTGCCTCACCCGCGGGCCCCGCGCCCCGCTCCCGGCCTCCGGCATGGGCCTCGACCACCGCCGCTGGGCCGGC
CCCGCGCGCGGCGGCGGCCACGAGTTCCTCGCCGACGACGTGCTGCGCCTGGGCGCGTCCAAGATCCGGATCGGCCTCGA
CGTCGCCGGCGGCGCCGCCAACTTCGCCGCCCGGATGAGGGAGCGCGGGGTCACCGTCGTCACGTCCGTGCTCGACGGCC
CCGGGAAGCCCATGAACGAGTTCGTGGCGTCAAGGGGCCTGTTCCCGCTGCTGCTCTCGCCGGCGCACCGGTTCCCCTTC
TACGACGGGGTGTTCGACCTGGTGCACGTCGGCACCGCGGCGCTGGACGAGGCCGGGGCGCCCGCGATGGGGCAGGCGGC
GACGCCGGAGGCGCTGGAGTTCTTCATGTTCGACGTCGACCGGGTGCTGCGCGCCGGCGGGCTGCTCTGGATCGACAGCT
ACCTGTGCCAGAGCGAGGAGAGGAGGCGGGTGGTTGCCAAGCTCATAGAGAGGTTTGGTTACAAGAAGCTCAAGTGGGTC
GCCGGAGAGAAGGCCGGCGGTGCGGCGACATCAACCTACCTCTCCGCGGTGCTGCGAAAGCCGGCAAGGAGCTGAAATCA
TAC---ACAAGGATTGATCAATCCAGGCTCCTTGATCAGAGGTACGGCCACTGTGCCCTCAAATTGTTTGTAGCTCCCAG
ATTTTGATGGGACGAATGTGAATGTGAATGCCGTATAGGTGCCAAGGAATTTTTTAGATTACAGAAGAAACCGGTGCTAC
GGATTAGCTTGATTCCATTGGTTGTTGATTGTTGAGAGATAGTGACTGAAAATAACTGCAAGATTGTACAACTCTTCTAC
AT------------------------------------------------------------------------------
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----TTGT------------------------------------------------------------------------
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---------------------------------------------TGATGCTATTAGATGGGACACAAGCCGTGCAGTGC
TACTTTTGTTGCTCTATTGGTGAATTGCAATTTGTGGAAGAGGTTGGAAAATGGTGTACACTGTACTGATCTTCCATTTC
AGGAAGAACGCGAAATAAATTGACGCTCTTCA-----AGCTACCTACCCATGATATGGTCCATCCAAGTCTATCATTGAT
AGTATGTTGTGCAGCTCCTTTCAATCCATCTGTCTACCATTAATTCCCATATAGCTTAGGCAAACCTGCATAAGCAAAAT
AGTCCAACAATTGGTTATCTTATTTATCACAATATAATTATTAACTGAAAAAATTATTGACATCTTGTGCTTGAAGCTTG
ATCAGGAATAGTTTTTTTTTTCTGAAACAATATATGTTTTGCGCTAATTTACGTGTCATGCGAAAAATATCATGTCATAT
TTTGTTGTTTTTCTTTTTGACACTGGCCTACAGATATGAATTCTTTATAGTTAGTTGTATGAGTGTACCATGTATCAGAG
TTATTATATAGACCTATTCGTATCCAGTTGTCCTAAATTATAG
>chr4A_591
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------------------------------ATTTCATCTCGTAAAGTTCCGCCCTCGCAGTTTGGTCAAAAGAGTTAGAC
CTAATCCAACAAACAATACAAGGAATCTTTTAAAAACTTGAAAAAA--AGAATTAGGCCAAACCTAGAACCTGATGTATT
TTTAGAACT-AAAGAAA--TGTACTGTGTTTGGGATAACAAATAAATCAAGGTACATACGAGACCGGATGTCATACACAA
CGACAACCCCCTCGGTCCTCTCTATCTCACTCCCCACTCCCCACTCCACTCGATTCGCTCTCGCTGAGCAAGCCGGCGCC
CGGAGCAGAGCCCGAGATCCCTCCCCGCCGCGCCGGGCCGTGGTTTCCACTAGCCGAGCTCGCAAAAGCCGCTGCCTTCC
ATCCCTCTTCTCGCCCGCTCGGGGGA--GCAACGGAGC------CGCGCGCCATGGGGTCCGTGTCCCTGAAGCTGCCGG
CGTCCCGCCGCCGCCACGGCGGGCCGCTCTCCTGCCTCTGCTCACCGGCGCCGCTCAACCTCCTCATGCTGCTCTCCCTC
CTCTGCACCAACCTCCTCGCCTTCTTCGCCTTCTTCGCCGCCCCTCCCCGCCACGACCCCGCCGCCGGCACAACCCCCTC
CGCCTCCTCCAACCTCTCCGCGCACGTCGCCGCCATCGCGCTCGAGATCGGCGGCGGGTCCTCCTCCTCCGGCGCCCGCC
TCCCGGACGGCCTGCCCCCGGAGCTGCTCCTCTTCCTCACCCCGCACGCGCTGCCGCTCGGCCGCGACGCGCGGACGGGG
CTCACCCACATGCCGGCCTCCGTCGCGGCCTCCTGCCTCCGCTCCCCGTCCGCGCTGGCGCTCCTCTCGGCCTTCATGTC
CTACGCGCCCCACTCCGCCTGCCCGCGCAACGCCACCCTCCCGCGCCGGCTCGTCTCCAAGGGCTGCGAGCCGCTGCCCC
GCCGCCGGTGCCTCTCCCGCGGGCCCCGCGCCCCGCTCCCGGCCTCCGGCATGGGCCTCGACCACCGCCGCTGGGACGGC
CCCGCGCGCGGCGGCGGCCACGAGTTCCTCGTCGACGACGTGCTGCGCCTGGCCGCGTCCAAGATCCGGATCGGCCTCGA
CGTCGCCGGCGGCGCCGCCAACTTCGCCGCCCGGATGAGGGAGCGCGGGGTCACCGTCGTCACCTCCGTGCTCGACGGGC
CCGGGAAGCCGATGAACGAGTTCGTGGCGGCGAGGGGCCTGTTCCCGCTCCTGCTCTCGCCGGCGCACCGGTTCCCCTTC
TACGACGGGGTGTTTGACCTGGTGCACGTCGGCACCGCGGCGCTGGACGAGGCCGGGTCGCCCGCCATGGGGCAGGCGGC
GACGCCGGAGGCGCTGGAGTTCTTCCTGTTCGACGTCGACAGGGTGCTGCGCGCCGGCGGGCTGCTCTGGATCGACAGCT
ACGTGTGCCAGAGCGAGGAGAGGAGGCGAGTGGTTGCCAAGCTCGTTGACAGGTTTGGTTACAAGAAGCTCAAGTGGGTC
GTCGGAGAGAAGGCCGGCGGTGCAGCGACATCAACCTACCTCTCGGCGGTGCTGCGAAAGCCGGCAAGAAGCTGAAATCA
TACTACACAAGGATTGTTCAATCCAGGCTCCTTGGTCAGAGGTACGACGACTGTACCTTCAAATTGTTTGTAGCTCGCAG
ATTTTGATGGGACGA---------------------------CAAGGAATTTTTTAGATTACAGAAGAAACCGGTGCTAC
GGATTAGCTTGATTCCATTGGTTGTTGAATGTTGAGAGATAGTGACTGAAAGTAACTGCAAGATTGTACAACTCTTCTAC
ATTGGTTGTTGAACGTTGAGAGATAGTGACTGGAAATAACTGCAAGATTGTACTTCCTTCGATTCATATTACTTGTCGCT
CAAATGGAAGTATCTAGACGTATTTCAGTGCTAGATACATCAATTTGAGCGACACGAAATATGGATCAGAGGGAGTTTCT
ACATTTGT------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TGATGCTATTAGATGGGACACAAGCCGTGCAGTGC
TACTTTTGTTGCTCTATTGGTGAATTGCAATTTGTGGAAGAGGTTGGCAAATGGTGTACACTGTACTGATCTTCCATTTC
AGGAAGAATGCGAAATTAACTGACGCTGTTCGAATCGAGCTACCTACCCATGATATGGTCCATCCAAGTCTATCATTGAT
AGTATGTTGTGCAGCTCCTTTCAATCCATCTGTCTATCATTAATTCCCATCTAGCTTAGGCAAACCTGCATAAGCAAAAT
AGTCCAACAATTGGTTATCTTATTTATCGTGAC--AATTATTAACTGACAAAATTATTGACATCTTGTGCTTGAAGCTTG
ATTACGAATAGCTTTTATTTTCTGAAACAATATGTGTTTTGCGCTAATTTACGTGTCATGCAAAAAATATCATGTCATAT
TTTGTTGTTTTTCTATTTGACACTGGCCTACAGATATGAATTCATTATAGTTAGTTACATGAGTTG-CCGTGTATCAGAG
TTATTATAT-GACATGTTCCTATCTAATTGTACTAATTTATAG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S--S---------------------------------S--
-----------------S--------------------------------------------------------------
--------S--------SS------S-------------------------S---------------------S------
-------------S------------------S-SS-SSSSSS-S-----------------------------------
-----------------------S--S--------S--------------------------------------------
--------S---------------------------------------------------S-------------------
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------------------------------------------------------------------------------S-
---------------------S----------------------------------S-----------------------
-------------------------------------------------------------------------S------
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--------------------------------------------------SS----------------------------
-------------------------------------------------------------------------------S
-------S---------------------------S--------------------------------------------
-----------------------------S--------------------------------------------------
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---------------------S----------------------------------------------------------
----S------------S--S-------------------------S----S----------------------------
-S------------------S------------------------------S----------------------------
-S-------S-SS-------------------------------SS----------------S-----------------
----------------------------------------------------------------------S---------
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-----S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S--------------------
-------------------S---S---------------------S----------------------------------
-------------------S----------------------S-----------------------S-------------
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-------S-----S-----S-------------------------------------------------------S----
-----------------------------------------S--------S---------------S-------------
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-----------------S------------S------------
>forward_232
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----------------------------------------------------GCAAGTGGATGCGTTGTGTT--------
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>reverse_2181
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--------------------GTCCAGGCTCCTTGATCAGAG---------------------------------------
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