>input_sequence_59754
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---ATGCTTCCCGCCGGCGACGGCTCGTCCGCCGCCGTCGCCGCCCTCTCTTTCACCGATGCGGACGGCGACGACTACTC
CGAGGACGGGGACTTCACCGGCGTCCCGTTCCTCGAACCGCCCGATCCGAGCCTCCCCGACCCCACCTCCTCCTCCGCCA
CCGCCCTGCTCCCCGCGGGTGGAAGCGGCGGCCAAGCCTCGTCGGGCGGCGAGCGGCGGCCACTCTTCCAGCGCCTCTGG
ACGGAGGAGGACGAGATCGTGATCCTCCGCGGGTTCGCGGAGTTCACCGCCGCCCGCGGCACGGCGTTCGCGTCGCACCA
GTACGACACGGACCCCTTCTACGAGGATATGCGCCGCCGCCTCCAGCTCGACTTCTCCAAGAGCCAGCTCGTCGAGAAGC
TCCGCCGCCTGAAGCGCAAGTACCGCAACTGCGTCTCCCGCCTCCGCGGGTCCGGCGCTGCCTTCTCCTTCCGCTCCCCG
CACGAGCAGGCCATTTTCGAGATCGCGCGCAACATCTGGCGCCCCACGAATAAGCACGGCCGGGATCCCTCGGCCGACTC
CGACGACGAAGAGGCTGTGGTTGCCGCTGCGGCGGTGGCTGCCACATCTGTCCCTGCGAACACCAGCCCCAATGGGGAAG
TCAAGTCCCCCTCAGGGCGGCAGCGCCGCCGTAGACGCTCGGTGGAAT---CA---GCTCCAACTGCCCCTGCTGCTGTC
CCTGCCACCATTTTGGTGCAGCCCCCTCAGCCAGTGCAGGTGCAGATGCCTGTGTCAGTCCCTGTCAAGATGGATGACTC
GCTACCAGCACTGCCCCAGGCTCCAATGCCTGTGACAGTGACCATGGAGGGTTCCGAGCCACTCAAGTTTCCGGTCATGT
CACCGCAGTCAGGAGTTCTTGATGTCGAGAAGAATTTTCTGACGCCTATGTTTAAGGAGATGATTCACGCAGTGATAAAT
ATGGGATCCAGTCCGTTTGGTATGAAACTTCCTGAGCCGCCACATGGCTTGCCCATGGAAGGGGAGAAATGGAGAAATCA
GCGAATCCTGGAGCTGGAAGTGTACTTGAAGCGGATCGAACTGCTGCAGGACCAGGTGAAGGCGACGCTTGAGGAGCTCA
AGTCCTCCACACCTAGGACTTGA---------------------------------------------------------
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>chr2B_1_TraesCS2B01G176900
AAACACCAAATATGTTTCTCCAACTTTCCAAGTTTAAGTCAAAGGTGAACAATGTCTTTGACTTTGCTCATCTTTTGCTT
GTTGCATAAAAATTTGTCA---------------TAACGAGATTAGAGAATATGCCCCCACCTCCCCGAATGCACATCCC
ACGTCCATCTCTCCACCCCTTGCTTCCGATCATGCCTTCGTGGGTATAACTTTGATTTATCTGACATCAA--TAGTCATG
TTTGTCCGCTATGATACACTATCATAGAACGATACTACTGTGACTTCTCTCGTCACTAATTGTAGTGTTTCATCTTTTTT
G-TTCTTAGACCACAATGCTTGTGAGTTGGGGAAGTAAACATGAAGGATATGTGTTCACTGTGAGACTGGTCTTGCACTA
GGGAAAATCAAAACACATAAAAAAATGTTTGCGACCAGCGAGAATTGTTTGCAGAGGTGACTAGTAAGTTGGTGGATACC
AATCACATGCTAACCACTATGCAAAGAAACATCTGTGCCTACAATTGCCACATCTATTGATCG----------------A
TCTAGAAATGATATATTGATTTATGGCATGCACTATGGCATCCTCAACGTGTCTTGCACAGAACTGTGATTGACGAACCC
CAAGAATGTATACATACAAA-AAT--AAAACAATCACAATAATTTGCAAAGTCAAAGTAATTGGTTTCATAATTTTAAGA
TTATGTTGCGGTTTCGTGGATGGCTGTGTTGCTCTAGGTTGACTTTGAATACATAGACACACATGTTAGGTTGAAAATA-
--ATAATGAAAAATAGTA---CAACTTTGGCATCGTCTGAAGGGCAAGCTTGCAAATTCCGAACTTGGGAGGTACATTAA
TGCAATAGTTCCAGTGAACTGAGGAATTCCTCTGCATTCTGCGACGACCCCCAGCCCAAAATTGGGGCGAGAGAAACCCA
GCAAATCCAGTCCCCGTCGATCCGAATCCCCCGAAATTCCGGGATCGGAACCCTAGCCCATCCCGAATCCCATCTCCGGC
CCAATGCTTCCCGCCGGCGACGGCTCGTCCGCCGCCGTCGCCGCCCTCTCTTTCACCGATGCGGACGGCGACGACTACTC
CGAGGACGGGGACTTCACCGGCGTCCCGTTCCTCGAACCGCCCGATCCGAGCCTCCCCGACCCCACCTCCTCCTCCGCCA
CCGCCCTGCTCCCCGCGGGTGGAAGCGGCGGCCAAGCCTCGTCGGGCGGCGAGCGGCGGCCACTCTTCCAGCGCCTCTGG
ACGGAGGAGGACGAGATCGTGATCCTCCGCGGGTTCGCGGAGTTCACCGCCGCCCGCGGCACGGCGTTCGCGTCGCACCA
GTACGACACGGACCCCTTCTACGAGGATATGCGCCGCCGCCTCCAGCTCGACTTCTCCAAGAGCCAGCTCGTCGAGAAGC
TCCGCCGCCTGAAGCGCAAGTACCGCAACTGCGTCTCCCGCCTCCGCGGGTCCGGCGCTGCCTTCTCCTTCCGCTCCCCG
CACGAGCAGGCCATTTTCGAGATCGCGCGCAACATCTGGCGCCCCACGAATAAGCACGGCCGGGATCCCTCGGCCGACTC
CGACGACGAAGAGGCTGTGGTTGCCGCTGCGGCGGTGGCTGCCACATCTGTCCCTGCGAACACCAGCCCCAATGGGGAAG
TCAAGTCCCCCTCAGGGCGGCAGCGCCGCCGTAGACGCTCGGTGGAAT---CA---GCTCCAACTGCCCCTGCTGCTGTC
CCTGCCACCATTTTGGTGCAGCCCCCTCAGCCAGTGCAGGTGCAGATGCCTGTGTCAGTCCCTGTCAAGATGGATGACTC
GCTACCAGCACTGCCCCAGGCTCCAATGCCTGTGACAGTGACCATGGAGGGTTCCGAGCCACTCAAGTTTCCGGTCATGT
CACCGCAGTCAGGAGTTCTTGATGTCGAGAAGAATTTTCTGACGCCTATGTTTAAGGAGATGATTCACGCAGTGATAAAT
ATGGGATCCAGTCCGTTTGGTATGAAACTTCCTGAGCCGCCACATGGCTTGCCCATGGAAGGGGAGAAATGGAGAAATCA
GCGAATCCTGGAGCTGGAAGTGTACTTGAAGCGGATCGAACTGCTGCAGGACCAGGTGAAGGCGACGCTTGAGGAGCTCA
AGTCCTCCACACCTAGGACTTGAGGTT-TTTTAAGTTAGGAACTGATACGGTGTCTCTCATTATAGAATTCTTGCTACAA
TTCTGAGGGTAGATGTTTAGTTTTTTTTTCTCAACATTTTCTCGTGCATAAAAGACTATTGTTAACAGGGTTGGGACTTG
GAAACTAGTTTATTCATGGTTCTAATTGTTCATGTGATATTTAGCCGCAACGTATTTCTTTACAATGTAGGTGTTGTCCT
CTGTTTTGAAGTGTGATGCTTTGAGCGGACCGGAAGGTCTCCTGATGGAAAGCTTGAGCACTTCCGGTTAATA---TATT
AGGATCACAGATTGTGGTCATTCAGTATGTTATCATTGTCATCAATTTATATGAAAAGAGGTTAGATATGTTCAGTACTG
GTTGTCAATATAGTCAAAGGTCATGGAATTATGGCATAGGAAACCAGTGGTTAATCTGTGGAGCAGCCGAGCAGCATGGT
TGTTTAACTTGTGTTGATCGTGA--TTCATGACCCTGTTTATTTTCCATGAAGACTGAGAATTACGAGTGCCGATTTTCA
GAGGCCGAGCCACAGGTAGGCCGGTATCATGGGCGTCCGTTTGGGCCTTGGGATGTGCATCCCGTCTGTGGGTGGCAGGC
CTATGCAGTGAAATACAGGCCGCGATACGGCTAGGGAGTGTGTAGGCGTATTGTGTGCGGCCATGACTTATCGTTTGAAA
CAGCACAGGCGACAGAATCTTGCCCTGGTCACCCCCACCCACGACGATACTGACGACGAAACCAGAGGCACGCAGCGGGT
CGGCTCCTCCACCCCCATCCCCATCTGGCGAACGGTGGCGCGTGTGTTGCTCCGGCGAGATGCCCACCAATGGCCTCAAG
CTCAACGGGTATGTTTGCTCCCCCTCTGGCCAACCCTCACTTGAACTAGTTGTCTGTTCACCGCCGCGGATTTTGGGGAT
TTCTTACCAAGTTGGCTCAGCTTCGATTCATGCAGGATGTGTGCTGCGCCCGGCCCGTGGAGCAGTTTC
>chr2A_1
AAACACCAAATATGTTTCTCTAACTTTCCAAGTTTAAGTCAAAGGTGAACCATGTCTTTGACTTTGCTCATCTTTTGCTT
GTTGCATAAAAATTTGTCAGTCTGAAACGGATGCTAACGAGGTTAGAGAATATCCCCC-ACCTCCCGGAATGCACATCCC
GCACCCATCTCTCCACCCCTTGCTTCCGTTCATGCCTTCGTGGGTATAAATTTGATTTATTTGATAATAAATTAGTCACA
TGTGTCCGCTATGATACACTATCATAGAATGATACTACTGTGACTTCTCTCGTCACTAATTGTAGTGTTTCATCTTTTTT
TTATTA-----GACGATACTTGTGAGTTAGGGAAGTAAACACGAAGGACATGTGTTCATTGTGAGAGTGGTCTTGCACTA
GGGAAACTTAAAACACATAAATAGATGTTTGCGACCAGCGAGAATTGTTTGTAGTAGTGATTAGTAAGTTGGTGGACAAC
AATCCCATGCTAACCACTATGCAAA-AAACATTTGTGTCTACAG-TGTCACATATGTTGATCGGAACCATCACTTCTCAA
TTTAGAAATGATATATTGATTTATGACATGCACTATGGCATCCTCAACGTGTCTTGCGCGGAATTGTGATTGACGAACCA
CAAGAATGTATACATACAAAAAAT--AAAACGATCGCAATAATTTGCAAAGTCAGAGTAATTGGTTTGATAATTTTAAGA
TTATGTTGCAGTTTGGTGGATGGTTGTATTGCTCTAGGTTGACTTTGAATGCGTAGACACACATGTTAGGTTGAAAATAC
TAATAATGAAAAATGGTA---CAACTTTGGCACTGTATGAAGGGCAAGTTTGCAAATTCCAAACTTGGGAGGTACGTGAG
TGCAATAGTTCCAGTGAACTGAGGAATTCCTCTCCGTTCTGCGACGACCCCCAGCCCAAAATTGGGGCAG----------
--AAACCCAGTCCCCGTCGATCCGAATCCCCCGAAATTCCGGGATCGGAACCCTAGCCCATCCCGAATCCCATCTCCGGC
CCAATGCTTCCCGCCGGCGACGGCTCGTCCGCCGCCTTCGCCGCCCTCTCTTTCACCGATGCGGACGGCGACGACTACTC
CGAGGACGGGGACTTCACCGGCGCCCCGTTCCTCGAACCTCCCGATCCGAGCCTCCCCGACCCCACCTCCTCCTCCGCCA
CCGCCCTGCTCCCCGCGGGTGGAAGCGGCGGCCAGGCCTCGTCGGGCGGCGAGCGGCGGCCCCTCTTCCAGCGCCTCTGG
ACGGAGGAGGACGAGATCGTGATCCTCCGCGGGTTCGCGGAGTTCACCGCCGCCCGCGGCACGGCGTTCGCGTCGCACCA
ATACGACACGGACCCGTTCTACGAGGATATGCGCCGCCGCCTCCAGCTCGACTTCTCCAAGAGCCAGCTCGTCGAGAAGC
TCCGCCGCCTGAAGCGCAAGTACCGCAACTGCGTCTCCCGCCTGCGCGGGTCCGGCGCCGCCTTCTCCTTCCGCTCCCCG
CACGAGCAGGCCATTTTCGAGATCGCGCGCAACATCTGGCGCCCCACGAATAAGCACGGCCGGGATCCCTCGGCCGACTC
CGACGACGAAGAAGCTGTGGTTGCCGCTGCGGCGGTGGCTGCCACACCTGTCCCTGCGAACACCAGCCCCAATGGGGAAG
TCAAGTCCCCCTCAGGGCGGCAGCGCCGCCGTAGACGTTCGGTGGAATCAGCA---GCTCCATCTGCCCCTGCAGCTGTC
CCTGCCACCATTTTGGTGCAGCCCCCTCAGCCAGTGCAGGTGCAGGTACCCGTGTCAGTCCCTGTCAAGATGGATGACTC
GCTACCAGCACTGCCCCAGGCTCCAATGCCTGTGACAGTGACCATGGAGGGTTCCGAGCCACTCAGGTTTCCAGTCATGT
CACCTCAGTCAGGAATTGTCGATGTCGAGAAGAATTTTCTGACGCCTATGTTTAAGGAGATGATTCACGCAGTGATAAAT
ATGGGATCCAGTCCGTTTGGTATGAAACTTCCTGAGCCGCCACACGGCTTGCCTATGGAAGGGGAGAAATGGAGAAATCA
GCGAATCCTGGAGCTGGAAGTGTACTTGAAGCGGATCGAACTGCTGCAGGACCAGGTGAAGGCGACACTTGAGGAGCTCA
AGTCCTCCACACCTAGGACTTGAGGTTTTTTTAAGTTAGGAACTGATACGGTGTCTCTCATTATAGAATTCTTGCTACAA
ATCTGAGGTTAGATGTTTAGTGTTTTTC-CTCTACATTTTCTCGTGCATAAAAGGACATTGTTGACTGGGTTGGGACTTG
GAAACTAGTTTATTCATGGTTCTAATTGTTCATGTGATATTTAGCTGCTACTTATTTCTTTATAATGTAGGCGTTGTCCT
CTGTTTTGAAGTGTTATGCTTTGAACGGACAGGATGGTCTCCTGATGGAAAGCTTGAGCACTTTCAGTTAATATATTATT
AGGATCACAGATTGTGGTCATTTCAG----TATCATTTTCATCAATTTATATGAAA-GAGATTAGATATGTTCAGTACTG
CTTGTTATCAATTG--AAGGTCATGGAATTATGGTATAGTAAACCAGTGGTTAATCTATG--------GAGCAGCATGGT
AGTTTAACTTGTGTTTGATCATGATTTCATGACCCTGTTTATTTTCCGTGAAGGCTGAAAATTAC---------------
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>chr2D_1
AAACGCCAAATATGTTTCTCTAACTTTCTAAGTTTAAGTCAAAAGTGAACAGTGTCTTTGACTTTGCTCATTTTTTGCTT
GTTGCATAAAAAATTGTCAGTCTAAAACGGATGCTAACGAGGTTAGAGAATATGCCCC-ATCTCCCTGAATGCACATCCC
GCACCCATCTCTCC---CCCTGCTTTCGGTCATGCCTTCGTGGGTATAACTTTGATTTATGTGACAATAAATTAGTCACG
TTTGTCCGCTATGATACACTATCATAGAACGATACTACTGTGACTTCTCTCTTCACTAGTTGTAGTGTTTCATCATTTTT
TTTTCTTACACGACAATGCTTGTGAGTTGGCGAAGTAAACATGAAGGACATGTGTTCATTGTGAGAGTGGTCTTGCACTA
GGGAAAATCAAAACGCATAAATAGATGTTTACGACCAGCGAAAATTGTTTGTAGCGGTGACTAGTAAGTTGGTGGACAAC
AATCTCATGCTAACCACTATCCAAAGAAACATATGTGTCTACAGTTGCCACATCTGTTGATTGGAACCATCACTTCTCAA
TCTAGAAATGATATATTCATTTATGGCATGCAGTGTGGCATCCTCAGCGTGTCTTGCGTGGGATTGTGATTGACGAACCA
CAAGAATATATACGTATAAA-AAATAAAAACGATTACAATAATTTGCAAAGTCAAAGTAATTGGTTTGATAGTTTTAAGA
TTATGTTGCAGTTTCGTGGATGGCTGTATTGCTCTAGGTTGACTTTGAATACACAGACACACATGTTAGCTTAAAAATA-
--ATAATGAAAAATAGTACTCCAACTTTGGCACCGTATGAAGGGCAAACTTGCAAATTCCAAATTTCAGAGGTACCTAAG
TGCAATAGTTCTAGTAAACTGAGGAATTCCTCTGCGTTCTGCGACGACCCCCAGCCCAAAATTGGGGC--GAGAAACCCA
GAAAATCCAGTCCCCGTCGATCCGAATCCCCCGAAATTCCGGGATCGGAACCCTAGCCCATCCCGAATCCCATCTCCGGC
CCAATGCTCCCCGCCGGCGACGGCTCGTCGGCCGCTGTCGCCGCCCTCTCTTTCACCGATGCGGACGGCGACGACTACTC
GGAGGACGGGGACTTCACCGGCGCCCCGTTCCTCGAACCTCCCGATCCGAGCCTCCCCGACCCCACCTCCTCCTCCGCCA
CCACCCTGCTCCCCACGGGTGGAAGCGGCGGCCAGGCCTCGTCGGGCGGCGAGCGGCGGCCCCTCTTCCAGCGTCTCTGG
ACGGAGGAGGACGAGATCGTGATCCTCCGCGGGTTCGCGGAGTTCACCGCCGCCCGCGGCACGGCGTTCGCGTCGCACCA
GTACGACACGGACCCATTCTACGAGGATATGCGCCGCCGCCTCCAGCTCGACTTCTCCAAGAGCCAGCTCGTTGAGAAGC
TCCGCCGCCTGAAGCGCAAGTACCGCAACTGCGTCTCCCGCCTCCGCGGGTCCGGCGCCGCCTTCTCCTTCCGCTCCCCG
CACGAGCAGGCCATTTTCGAGATCGCGCGCAACATCTGGCGCCCCACGAATAAGCACGGCCGGGATCCCTCGGCCGACTC
CGACGACGAAGAAGCTGTGGTTGCCGCTGCGGCGGTGGCTGCCACATCTGTCCCTGCGAACGCCAGCCCCAACGGGGAAG
TCAAGTCCCCCCCAGGGCGGCAGCGCCGCCGTAGGCGCTCGGTGGAAT---CACCAGCTCCAACTGCACCTGCTGCTGTC
CCTGCCACCATTCTGGTGCAGCCCCCTCAGCCAATGCAGGTGCAGGTGCCTGTGTCAGTCCCTGTCAAGATGGATGACTC
GCTACCAGCACTGCCCCAGGCTCCAATGCCTGTGACAGTGACCATGGAGGGTTCCGAGCCACTCAAGTTCCCTGTCATGT
CACCTCAGTCAGGAGTTGTTGATGTCGAGAAGAATTTTCTGACGCCTATGTTTAAGGAGATGATTCACGCAGTGATAAAT
ATGGGATCCAGTCCGTTTGGTATGAAACTTCCTGAGCCGCCACACGGCTTGCCTATGGAAGGGGAGAAATGGAGAAATCA
GCGAATCCTGGAGCTGGAAGTGTACTTGAAGCGGATCGAATTGCTGCAGGACCAGGTGAAGGCGACGCTTGAGGAGCTCA
AGTCCTCCACACCTAGGACTTGAGGTTTTTTTAAGTTAGGAACTGATACGGTGTCTCTCATTATAGAATTCTTGCTACAA
ATCTGAGGTTAGATGTTTAGTGTTTTT-TCTCCACATTTTCTCGTGCATAAAACGACATTGTTGACTGGGTTGGGACTTG
GAAACTAGTTTATTCATGGTTCTAATTGTTCATGTGATATTTAGCTGCTACTTATTTCTTTATAATGTAGGTGTTGTCCT
CTGTTTTGAAGTGTTATGCTTTGAACGGACAGGATGGTCTCCTGATGGAAAGCTTGAGCACTTTCAGTTAATATATTATT
AGGATCACAGATTGTGGTCATTTCAG----TATCATTTTCATCAATTTATATGAAA-GAAATTAGATATGTTCAATACTG
CTTGTCATCAATTGCG--GGTCATGGAATTATGGTATAGTAAACCAGTGGTTAATCTGTG--------GAGCAGCATGGT
AGTTTAACTTGTGTTTGATCATGATTCATGATCCTTGTTTATTTTCCGTGAAGGCTGAAAATTAC---------------
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>SNPs
--------------------S-----------------------------------------------------------
-----------------------------------------S----------------S-------S-------------
S-SS------------------------S-------------------------------S-----SS----------S-
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S-------S--S------------------------------------S---------S-------S-------------
---------------------S-S---------------------------S--S---------------------S-S-
----S---------------------------S----S-----S-----------S------------------------
---------------------------------------------------------S-S---S---------------S
-------------------------------S-----------------------------------S------------
---------S-----------------S----------------------------------------------------
--------------------------------S---S-----------------------S--------------S-S-S
-----------------------------------S--------------------------------SS----------
-S------------------------------------------------------------------------------
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-----------------------S---------------S----------------------------------------
----------------------------------S--------------------------S------------------
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---------------S----------------------------------------------------------------
----------------------------------------------------------S---------------------
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------------S-------------------------------------------------------------------
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---------------------------------------------S----------------------------------
------------------------------------------------------------------------S-------
----S------------S--------------------------------------------------------------
--------------------------------------------S--------S--------------------------
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S-------S------------S-----S----S---------------------SSS------S--S-------------
---------------------------------------------S--S--S----------S-----------------
--------------S---------S-----S---S----------------------------S-S--------------
----------------------SSSSSSSS-------S------------------S---S-------------------
S------SS-SSSS-S------------------S----S--------------------SSSSSSSS------------
S--------------SSSSSSSS------------------------S-----S----S------SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_618
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--------------------------------------CATCCTCAACGTGTCTTGCA----------------------
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>reverse_2304
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---------------------------------------------------------------AACAGGGTTGGGACTTG
GAA-----------------------------------------------------------------------------
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