>input_sequence_59702
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------ATGGGCCAGAGGTTCAGGTTCTTCTGCTGCGGCTGCGGGGCCAATGCGGCCGACGG
TGACATGGAGGTTGACGACGAGTCGGAGTGCGGCGGGAGCAAAGGGGGCGAGGAGGTGGGGACGCGGCAGCTGTCGTGGG
CGCAGGTGGAGAGGATGACGGGCGGGTTCACCTCCGCCGTGGTCGGCGAGGGTGGGTTCAGCACCGTCTACCTCGCGCGC
CTCTCCGGCGC------------CCTCGCCGCCGTCAAGGTCCACCGCAGCAGCGAGCGCATCCACCGCGTCTTCCGCCA
GGAGCTCGAGACGCTCCTCCGCATCCGCCACCCGCACATCGTCCGCCTCCTCGGCTTCTGCGAGCAGCAAGGTGCGTGCT
TTATTCCGG---------------------------CATTTCTCTGCTCTGTGCCGCGTCGCGCGCCGTCGTGCTGTAGC
TGAAGCTGAATTGTTTGTGGATTTTGGTCGGTGCAGATGAGGGTGTGCTGGTGCTGGAGTTCGCGGCGAACGGGAACCTG
TACGAGAAGCTCCACGGCGGCGGCAAGG---------------------CCGCGGGGGCGATGCCGTGGGCGTGGCGGGT
GTCGGTGGCGCTGCAGGTGGCGCAGGCGCTCGAGTACCTGCACGAGCGGTGCGAGCCGCAGGTGGTGCACGGCGACGTGA
AGGCGTCGAACGTGCTCCTGGACGCCTCCATGTCCGCCAAGCTCTGCGACTTCGGGTCGGCGCGGATGGGGTTCTCCGCG
GCCGTCCGCCCGC---------GGTCGTCGGCGCACACCATGCTCGGCTCCCCGGGCTACGTCGACCCGCACTACATCCG
CTCCGGCGTGGTCACCAAGAAGACGGACGTGTACAGCTTCGGGGTGCTGCTGCTGGAGCTCCTAACCGGCATCGAGGCCT
TCTGCCCCGTGGAGGGCCGGCTGCTGACCGGCGTCCTCGCCCCGCGGCTCAAGGCCGCCTG------------------C
GACGCGCGGATGCTGGTGGACGAGCGGCTCGGGAGCGCGTACGACGCGGGCGAGGCGTCCGCCGTGGCCGCGCTGGCGGC
GTCGTGCGTGGGGCAGAACCCCAGCCTCCGCCCGTCCATGGGCGACGTGGTGCGCACCCTGGAGCAGAGCGCGCAGGGCT
CCATCCTGGCCGCAGGGAGAGGATCGGACGGCCAGGGGAAGCTGTGA---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>chr1D_1_TraesCS1D01G175400
TGTCCTAGACAGACCCAAACGAAAATGTCACCCAACTATACCAGGTTGCGGAAAAAGGATTCCTTAATTTTAAGATTAAG
GCAAAAAAATCCGTGAGG-----GACAAAATACATTTTCATGTGATACATATATTTGAGGTGATAACACCACACCAAGTG
AATGCTGATCTTTACATAGTACGATGCACATAACCAACGCGTCCACCACCACAACAACAACAACAAATCTTTTTACGGTG
ACTTAGG---AAAAGCCCGGCCTCTCCTATTT---CTTGATCAGGGCTCGGCAACGACAAATGTAAATGGCACGACTAAG
CCTTTTCTAGAGACGAGCATCATCAGGTGTACCTTACTCCAAAGTCATATCAGTGGTAGTAGTTGCGAGACATCCTGGAT
CTTGGAGGAGCCATAACCGTTGAGGGTAGGGAGGCTCGG---CTCCTCGCGCATAATTGGCGTTTCAGCTGTAATCTAAC
ACGCCAATAATCCGTTTTCAAGCCAAAGCTGCACGCAAATTCGCATGTTATCGTCCATGTGTTGATCCAATTATTTCTCC
CCAG-AAAGGACCATTATTCCCGTCCGTTG----------TAATCTATTGGAGAGCTCCAGAGACGAGGGAGGGTGAGCC
CATGACTGATTTCG--------TGCATGTATTAGTATTATTTATTTATTTTCTTTATAT--GGATGGAAGGTTATGATGG
ATGGTGGTCAGTGAGTGAGTAAGGTGGGCCCGGGTGCCAGCCACAGCGAGATGGTTCAGGTTCTACACTTGCCATTCCTA
CCCCTGCCTG----CATAATGATCTGCTAAATGTTGGCACTTCACAGTTCACACCCCCACCAAATCTGAATTCCCCGCAC
CCACCTATATATAAGCCCCTCTACGCCACACCAAGTACACCCGCCGTTCTCTCCACAATATACAGAGCACAGAGCCAGAA
CCCCAAAGCCA----------CCTCCCTCTCTCGGCTC---------------GTCTCGTCTCGTGTGTGCTTGCAAGAA
ATCCATAGAAACCGGCGAGGATCGATGGGCCAGAGGTTCAGGTTCTTCTGCTGCGGCTGCGGGGCCAATGCGGCCGACGG
TGACATGGAGGTTGACGACGAGTCGGAGTGCGGCGGGAGCAAAGGGGGCGAGGAGGTGGGGACGCGGCAGCTGTCGTGGG
CGCAGGTGGAGAGGATGACGGGCGGGTTCACCTCCGCCGTGGTCGGCGAGGGTGGGTTCAGCACCGTCTACCTCGCGCGC
CTCTCCGGCGC------------CCTCGCCGCCGTCAAGGTCCACCGCAGCAGCGAGCGCATCCACCGCGTCTTCCGCCA
GGAGCTCGAGACGCTCCTCCGCATCCGCCACCCGCACATCGTCCGCCTCCTCGGCTTCTGCGAGCAGCAAGGTGCGTGCT
TTATTCCGG---------------------------CATTTCTCTGCTCTGTGCCGCGTCGCGCGCCGTCGTGCTGTAGC
TGAAGCTGAATTGTTTGTGGATTTTGGTCGGTGCAGATGAGGGTGTGCTGGTGCTGGAGTTCGCGGCGAACGGGAACCTG
TACGAGAAGCTCCACGGCGGCGGCAAGG---------------------CCGCGGGGGCGATGCCGTGGGCGTGGCGGGT
GTCGGTGGCGCTGCAGGTGGCGCAGGCGCTCGAGTACCTGCACGAGCGGTGCGAGCCGCAGGTGGTGCACGGCGACGTGA
AGGCGTCGAACGTGCTCCTGGACGCCTCCATGTCCGCCAAGCTCTGCGACTTCGGGTCGGCGCGGATGGGGTTCTCCGCG
GCCGTCCGCCCGC---------GGTCGTCGGCGCACACCATGCTCGGCTCCCCGGGCTACGTCGACCCGCACTACATCCG
CTCCGGCGTGGTCACCAAGAAGACGGACGTGTACAGCTTCGGGGTGCTGCTGCTGGAGCTCCTAACCGGCATCGAGGCCT
TCTGCCCCGTGGAGGGCCGGCTGCTGACCGGCGTCCTCGCCCCGCGGCTCAAGGCCGCCTG------------------C
GACGCGCGGATGCTGGTGGACGAGCGGCTCGGGAGCGCGTACGACGCGGGCGAGGCGTCCGCCGTGGCCGCGCTGGCGGC
GTCGTGCGTGGGGCAGAACCCCAGCCTCCGCCCGTCCATGGGCGACGTGGTGCGCACCCTGGAGCAGAGCGCGCAGGGCT
CCATCCTGGCCGCAGGGAGAGGATCGGACGGCCAGGGGAAGCTGTGATCCACGAGG--------ACCGTAGGCGTTAGAT
CCGGATTGGCCAGCTGTAACCTGTGATGAGTGGTGTGAGCTGCACTGCACACTTGGAGCCTCGGGACAGGCCGAGGGCGG
GCGAACAAAGCGGTA-GTAGTGGGCGAGCATATCGAAAAGCCATCTCGAAAAGAAAAAAAGGA-TGGGGAAAAAGAGTTG
GTTTGGAAGAGAAAAAGGTAACTGTAGGGTTTGTGCGCGCTGATGGGGAATTTCGATGACATTA-TATGCCAAAGTGGCA
GTGATTTGGGTGTGAGAGAGAGGGAGGAAAAAGACTAAAACAAACTGGGGTCGTCCATTCTGCGATTCTAAAGATTTTGG
TGATTGTTTGGTTGGTTTGTAAAGTACTCCCTCCGTCCCATAATATAAAAGCGTTTTTGACACTAATCAAACGCTCTTAT
ATTATGGGACGGAGGGAGTATTACATTGAGTGTTCTTGCTGCTGTTCAAA----GTTTGTTCGTTCGTTTTGTTTGTGGT
TCGAGC------------TTCTACTTGTGACGGGTTTGACAGCCTTTCTCTCCGTAATAAACAATTGCTGTGCTGCCGTG
CGAATTTA------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TTACCGCTATAGTAATATGGTACGGTGGCGTCAGATGGACGAACAAATCTAGCAGTCCAGGTTCAAAA
GCAGAAAGTAAACA-------GCGTCCTCTTAATACGACGTTATTCCGCTGTCCTGCAGAGCAGATTAGTGGGTTTGGAT
CCTGGCACTGGCACTGGCACCCACCCAGAGCGCCAGATTCCAAAAACTCCG-TTTTTCAAACGCGCGCACATATTCTCCT
CCTCTCTCTGC--ATAAAAATTCAGTCCATGGCGCTCTCTGACATATATGGTATTAATATATATACAATCCATGTTGGTC
AAACAAGCGTATACTACTCCATTCCGTAGTACAGTACATGTTCTC----TACTACTCTTTTCAGACACAGCTCATTCCAA
AGAACCAAAACGTGTCACTGAGAACCCGAAACTCTTCCAAACGCTTCCCACC
>chr1B_25
------------------------ATGTCACCTAACAAAACTGGTTGCAGAAAAGGGGATCC--TAATTTTGAGATTAAG
GCAATTAGTATCTACATTTTCTTGATAAAAAACATTTTCATTCAACCACTATATTCGAGGTGATAAAGCTGCACCGAGCA
AATGCCGTCTCTG-CATAGCATGATGCACACACCCAACACTTCCAACACAAC--CAAAAAGAAAATGTCATTTTACTGCG
ATAATACGAAAAAAGCCCAGACTCTCCTATTTGATCTTGATCAGGGCTGGGCAACCACAAATGTAAATGGCACGATGAAG
CCTTTTCTAGAGACAAGCATCATCAGGTGTACCTTACTACCAAGTCATATCAGTGGTAGTAGTTGCGAGACATCCTGGAT
CTTGGAGGAGCCATAACCGTTGAGGGTAGGGAGGCTCGG---CT---CGCGCATAATTGGCGTTTCAGCTGTAATCTAAC
ACGCCAATAATCCGTTTTCAAGCTAAAGCTGCACGCAAATTCGCATGTTATCGTCCATGTGTTGATCCAATTATTTCGCC
CCG-AAAAGGACCATTATTCCCGTCCGGTG----------TAATCTATTGGAG--CTCCAGGGACGAGGGAGGGTGAGCC
CATGACAGATTTTG------------TGTACTATTAATATTTATTTTCTTTCT--------GGATGGAAGGTTATGATGG
ATGGTGGTCAGTGAGTGAGTAAGGTGGGCCCGGGTGCCAGCCACGGCGAGATGGTTCTGGTTCTACACTTGCTATTCCTA
CCCCTGGCTG----CATAATGATCTGCT-AATGTTGGCACTTCACAGTTCACACCCCCACCAAATCTGAATTCCCCGCAC
CCACCTATATATAAGCCTCTCTACTCCACACCAAGTACAC---CCGTTCTCTCCACAATACACAGAGGA---AGCCAGAA
CCCCAAGGCCGTCCAAGTCTTCCTCCCTCTCTCGGCTCGGCTCTGCTCTTCCCGTCTCGTGTC-TGTGTGTTTGCGAGAA
----ATAGAAACCGGCGAGGATCGATGGGCCAGAGGTTCAGGTTCTTCTGCTGCGGCTGCGGGGCCAATGCGGCCGACGG
CGACATAGAGGTCGACGACGAGTCGGAGTGCGGCGGGAGCAAAGGGGGCGAGGAGGTCGGGACGCGGCAGCTGTCGTGGG
CGCAGGTGGAGAGGATGACGGGCGGGTTCACCTCCGCCGTGGTCGGCGAGGGCGGGTTCAGCACCGTCTACCTCGCGCGC
CTCTCCGGCGC------------CCTCGCCGCCGTCAAGGTCCACCGCAGCAGCGAGCGCATCCACCGCGTCTTCCGCCA
GGAGCTCGAGACGCTCCTCCGCATCCGCCACCCGCACATCGTCCGCCTCCTCGGCTTCTGCGAGCAGCAAGGTGCGTGCT
TTATTCCGTCGCCCGCGCTGGCCCGGCTCCGGCATTCATTTCTCTGCTCTGTGCCGCGTTTCGCGCCGTCGT------GC
TGAAGCTGAATTGTTTGTGGATTT-GGTCGATGCAGATGAGGGCGTGCTGGTGCTGGAGTTCGCGGCGAACGGAAACCTG
TACGAGAAGCTCCACGGCGGCGGCAAGG---------------------CCGCGGGGGCGATGCCGTGGTCGCGGCGGGT
GTCGGTGGCACTACAGGTGGCGCAGGCGCTCGAGTACCTGCACGAGCGGTGCGAGCCGCAGGTGGTGCACGGCGACGTGA
AGGCGTCGAACGTGCTCCTGGACGCGTCCATGTCCGCCAAGCTCTGCGACTTCGGGTCGGCGCGGATGGGGTTCTCCGCG
GCCGTCCGCCCGC---------GGTCGTCGGCGCACACCATGCTCGGCTCCCCGGGCTACGTCGACCCGCACTACATCCG
CTCCGGCGTGGTCACCAAGAAGACGGACGTGTACAGCTTCGGGGTGCTGCTCCTGGAGCTCCTGACCGGCATAGAGGCCT
TCTGCCCCGTGGAGGGCCGGCTGCTGACGGCCGTCCTCGCCCCGCGGCTCAAGGCCGCCTG------------------C
GACGCGCGGATGCTGGTCGACGAGCGGCTCGGGAGCGCGTACGACGCGGGCGAGGCATCCGCCGTGGCCGCGCTGGCGGC
GTCGTGCGTGGGGCAGAACCCCAGCCTCCGCCCGTCCATGGGCGACGTGGTGCGCACGCTGGAGCAGAGCGCGCAGGGGT
CCATCCTCGCCGCGGGGAGAGGATCGGACGGCCAGGGGAAGCTGTGATTCACGAGG--------ACCGTAGGCGTTAGAT
CCGGATTGGCCAGCTGTAACCTGTGATGA-TGGTGTGAG-----CTGCACACATGGAGCCTCGGTACAGGCCGAGGGCG-
---AACAAAGCGGTA-GTAGTGGGCGAGCATATCGAAAAGCCATCG--AAAG----AAAAGGCGTGGGGAAAAAGAGTCG
ATTTGGAAGAGAAAAAGG-----GTAGGGTTTGT----GCTGATGGGGAATTTCGATGACATTAC-ATGCCAAAGTGGCA
GTGATTTGGGTGTGTGTGAGAGAGAGGAAAAAGACTAAAACAAACTGGGGTCGTCCATTCTGCGATTCTAAAGATTTTGG
TGATTGTTTGGTTGGTTTGTAAGAAG------------------------------------------------------
---------------------TACATTGAGTGTTCTTGCTGCTGTTCAAA----GTT----CGTTCGTTTTGTTTGTGGT
TCGAGCAAGTCACCGGGCTTCTACCTGTGACGGGTTTGACAGCCTTTCTCTCCGTAATATACAATTGTTGTGCTGCCGTG
CGAATTTATTAGGGCATGTACAATGCATAGCCTTAACGTGATGTCTCGCATGCCATGTAGGATCGGATATGACGTAAAGT
AGGTTCGGATAGGGAAGCGGGATCCTTTTCAGGAGGTGGGTGCTTAAAAAGAAAAAATGTGGTCCTGTGACATAAGCTGA
AAAAGTTGGAGTGAAAAGTAGAGATGCATGTATACTAAAGTCTTTATTTTCTATTTTTTAATGAGGCCCACTAGTGGTAG
CTTGCATTGGGGAGAAAAAAATAAATGTAGGTGTCTCAGATTATTTTTTGTCATGAGGCATATGTATCCATATGCCATCA
TTGTACATGCCCTTACCGCTATAGTAATATGGTACGGTGACGTCAGATGGAGGAACAAATCTAGCAGTCCAGGTTCAAAA
GCAGAAAGTAAACTGCGCACTGCGTCCTCTTAATACGACGTTATTCCGCTGTCCTGCAGAGCAGATTAGTGGGTTTGGAT
CGC------------GGCAGCCACCCAGAGCGCCAGATTCCC-AAACTCCG-TTTTTCAAACGCGCGCACATATTCTCCT
CCTCTCTCTGC--ACAAAAACTCAGTCCATGGCGCTCTCTGACAT-----GGTATAA---ATATACAATCCAAGCTGGTC
AAACAAGCGTATACTACTCCACTCCGTACG--AGTACATGTTCTCTACGTACTACTCTTTTCAGACACAGCTCATTCCAA
AGAACCAAAACGTGTCAGAGAAAACCCGAAACTCTTCCAAACACTTCTCACC
>chr1A_243
AAAAA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------CCAGGCTCTCCTATTTGATCTTGATCAGGGATCGGCAACCACAAATGTAAACGGCACGACGAAG
CCTTTTCTAGAGACGAGCATCATCAGGTGTACCTTACCCCCAAGTCATATCAGTGGTAGTAGTTGCGAGACATCCTGGAT
CTTGGAGGAGCCATAACCGTTGAGGGTAGGGAGGCTCGGCTCCT---CGCGCATAATTGGCGTTTCAGCTGTAATCTAAC
ACGCCAATAATCCGTTTTCAGGCCAAAGCTGCACGCAAATTCGCATGTTATCGTCCATGTGTCGATCCAATTATTTCGCC
CCCAAAAGGGACCATTATTCCCGTCCCGTCCGGTGTAATCTAATCTATTGGAG--CTCCAGGGACGAGGGAGGGTGAGCC
CATCACAGATTTCGTGTATGTATGTATGTATTATTAATATTTATTTATTTTCTTTTTTCCCGGATGGAAGGTTATGATGG
GTGGTGGTCAGTGAGTGAGTAAGCTGGGCCCGGGTGCCAGCCTCAGCGAGATGGTTCTGGTTCCACACTTGCCATTCCCA
CCCCTGCCTGCATACATAATGATCTGCT-AATGTTGGCACTTCGCAGTTCACACCCCCACCAAATCTGAATTCCCCGCAC
CCACCTATATATAAGCCCCTCTACGCCACACCGAGTACACCCGCCGTTCTCTCCACAATACACAGAGGA---AGCCATAA
CCCCAAAGCCA----------CCTCCCTCTATCGGCTCTGCTCCTCTCTTCTCGTCTCGTCTCGTGTGTGTTTGCGAGAA
GTCCATAGAAACCGGCGAGGATCGATGGGGCAGAGGTTCAGGTTCTTCTGCTGCGGCTGCGGGGCCAATGCGGCCGACGG
CGACATGGAGGTGGACGACGAGTCGGAGTGCGGCGGGGGCAAAGGGGGCGAGGAGGCCGGGGCGCGGCAGCTGTCGTGGG
CGCAGGTGGAGAGGATGACGGGCGGGTTCACCTCCGCCGTGGTCGGCGAGGGCGGCTTCAGCACCGTCTACCTCGCGCGC
CTCTCCGGCGC------------GCTCGCCGCCGTCAAGGTCCACCGCAGCAGCGAGCGCATCCACCGCGTGTTTCGTCA
GGAGCTCGAGACGCTCCTCCGCATCCGCCACCCGCACATCGTCCGCCTCCTCGGCTTCTGCGAGCAGCAAGGTGCGTGCT
TTATTCCGG---------------------------CATTTCTCTGCTCCGTGCCGT---------CGTGCTGCTGAATA
TGAAGCTGAATTGTTCGTGGATTT-GGTGGATGCAGATGAGGGCGTGCTGGTGCTGGAGTTCGCGGCGAACGGGAACCTG
TACGAGAAGCTCCACGGCGGCGGCAAGG---------------------CCGCGGGGGCGATGCCGTGGGCGCGGCGGGT
GTCGGTGGCGCTGCAGGTGGCGCAGGCGCTCGAGTACCTGCACGAGCGCTGCGAGCCGCAGGTGGTGCACGGCGACGTGA
AGGCGTCCAACGTGCTCCTGGACGCGTCCATGTCCGCCAAGCTCTGCGACTTCGGGTCGGCGCGGATGGGGTTCTCCGCC
GCCGTCCGCCCGC---------GGTCGTCGGCGCACACCATGCTCGGCTCGCCAGGGTACGTCGACCCGCACTACATCCG
GTCCGGCGTGGTCACCAAGAAGACGGACGTGTACAGCTTCGGGGTGCTGCTGCTGGAGCTCCTGACCGGCATCGAGGCCT
TCTGCCCCGTGGAGGGCCGGCTGCTGACCGCCGCCCTCGCCCCGCGGCTCAAGGCCGCCTG------------------C
GACGCGCGGATGCTGGTGGACGAGAGGCTCGGAAGCGCGTACGACGCGGGCGAGGCGTCCGCCGTGGCCGCGCTGGCGGC
GTCGTGCGTGGGGCAGAACCCCAGCCTCCGCCCGTCCATGGGCGACGTGGTGCGCACCCTGGAGCAGAGCGCGCAGGGGT
CCATCCTGGCCGCGGGGAGAGGATCGGACGGCCAGGGGAAGCTGTGAGTCACGAGGACCGTACTACCGTAGGCGTTAGAT
CCGGATTGGCCAGCTGTAACCTGTGATGA-TGGTGTGAGCTGCGCAGCACACATGGAGCCTCGGTACAGGCCGAGGGCG-
---AGCGAACAAACCGGTAGTGGGCGAGCATATCGAAAAGCCATCC--AAAAGAAAAAAATGCGTGGGGAAAAAGAGTCG
ATATGGAAGAGAAAAAGG------TAGGGTTTGTGCGCGCTGATGGGGAATTTGGATGACATTATTATGCCAAAGCGGCA
GTGATTTGGGTGTGAGAGAGAGGGAGGAAAAAGACTAAAACAAACTGGGGTCGTCCATTCTGCGATTCTAAAGATTTTGG
TGATTGTTTGGTTGTTCTGTAAAAAG------------------------------------------------------
---------------------TACATTGAGTGTTCTTGCTGCTGTTCAAAGTTCGTT----CGTTCGTTTTGTTTGTGGT
TCGAGC------------TTCTACGTGTGGCGGGTTTGACAGGCTTTCTCTCCGTAAACAATTACTGC------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------TATGGCACGGTGACGTCAGATGGAGGAACAAATCTAGCAGTCCAGGTTCAAAA
GCAGAAG--------------GCGTCCTCTTAATACGACGTTATTCCGCTGTCCCGCAGAGCAGATTAGTGGGTTTGGAT
CCTGGCACT------GGCACCCACCCAGAGCGCCAGATTCCG-AAACTCCGTTTTTTCAAACGCGCGCACATATTCTCCT
CCTCTCTCTCTGAACAAAAACTCAGTCCATGGCGCTCTCTGACATATACTGGTATAA---ATATGCAATCCATGCTGGTC
AAACAAGCGTATACTACTCCACTCCGTACG--AGTACATGTTCTC----TACTACTCTTTTCAGACACAGCTCATTCCAA
A---------------------------------------------------
>chr4B_1122
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------GGCAGCTGTCCTGGG
CGCAGGTGGAGGCCATGACGTCGGGCTTCACGTCGGCCGTCGTCGGCGAGGGCGGCTTCAGCACCGTCTACCTCGCGCGC
CTCGCCGGCTCCGGCTCCTCCCAGCTCGCCGCCGTCAAGGTGCACCGCAGCAGCGAGCGCCTGCGCCGCGCCTTCCGCCA
GGAGCTGGACGCGCTGCTCCGCGTCCGCCACCCGCACATCGTCCGCCTCCTCGCCTTCTGCGACCAGCGC----------
--------------------------------------------------------------------------------
-----------------------------------GACGAGGGCGTGCTCGTCCTCGAGTTCGCGCCCAACGGCAGCCTG
CACGACCACCTCCACGGCCGCGACGGCGACGGCAGCACCAAGGCCGCACCCGCGGCCACGATGCCGTGGGCGCGGCGTGC
GGCCGTGGCGCTGCAGGTGGCCCGCGCGCTCGAGTACCTCCACGACCGGTGCGAGCCGCAGGTGGTGCACGGCGACGTCA
AGGCCTCCAACGTGCTGCTCGACGCCGCCATGGGCGCCCGGCTCTGCGACTTCGGGTCCGCGCGCGCCGGGTTCTCGGCG
TCGG------CGGCCGTGGCCGCCCGCCCGCCGCGCGCCGTGCTCGGGTCGCCCGGCTACGTGGACCCGCACTACCTCCG
CTCCGGCGTGCTCACCAAGAAGAGCGACGTGTACAGCCTCGGCGTGCTGCTGCTCGAGCTGCTCACCGGCACGCAGCCCT
TCAGC------GACGGCCGGCTGCTGACTTCCGCCGTCGCGCCGATGATCAAGGCCGGCTC------GTGCTCGTGCGAC
GACGTGCGTAGGCTCGTCGACCAGAGGCTAGGGTCCCGGTACGACGCGGCCGAGGCGGCGACCGTGGCAACGCTGGCGGC
GGCGTGCGTGGGTGACAACCCGGCGCTCCGGCCGTCCATGGCCGACGTGGTCCGGACCCTGGAGCAGA------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>chr5A_1122
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------GGCAGCTGTCGTGGG
CGCAGGTGGAGGCCATGACGGCGGGCTTCACCTCGGCCGTCGTCGGCGAGGGCGGCTTCAGCACGGTCTACCTCGCGCGC
CTCGCCGGCTCCAGCTCCTCCCAGCTCGCCGCCGTCAAGGTGCACCGCAGCAGCGAGCGCCTCCGCCGTGCCTTCCGGCA
GGAGCTGGACGCGCTGCTCCGCGTCCGCCACCCGCACATCGTCCGCCTCCTCGCCTTCTGCGACCAGCGC----------
--------------------------------------------------------------------------------
-----------------------------------GACGAGGGCGTGCTCGTCCTCGAGTTCGCGCCTAACGGCAGCCTG
CACGACCACCTCCATGGCCGCGACGGCGAAGGCAG---CAAGGCCGCTCCCGCACCCACTATGCCGTGGGCGCGGCGCGT
GGCCGTGGCGCTGCAGGTGGCCCGCGCGCTCGAGTACCTCCACGACCGGTGCGAGCCGCAGGTGGTGCACGGCGACGTGA
AGGCCTCCAACGTGCTGCTGGACGCGGCCATGGGCGCCCGCCTCTGCGACTTCGGCTCCGCGCGCGCCGGGTTCTCGGCC
T------------CCGCGGCCGTCCGGACGCCGCGCGCCGTGCAGGGCTCGCCCGGCTACGTGGACCCGCACTACCTCCG
CTCCGGCGTGCTCACCAAGAAGAGCGACGTGTACAGCCTCGGCGTGCTGCTGCTCGAGCTGCTCACCGGCACGCAGCCCT
TCAGC------GACGGCCGGCTCCTTACGTCCACCGTGGCGCCCATGATCAAGGCCGGCTCGTGCTCGTGCTCGTGCGAC
CAAGTGCATAAGCTCGTCGACCAGAGGCTTGGGTGCCGGTACGACGCGGCCGAGGCGGCGACCGTGGCGACGCTGGCGGC
GGCGTGCGTCGGGGACAACCCGGCACTCCGGCCGTCCATGGGCGACGTGGTCCGGACCCTGGAGCAGA------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>chrUn_1122
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------GGCAGCTGTCGTGGG
CGCAGGTGGAGGCCATGACGTCGGGCTTCACGTCGGCCGTGGTCGGCGAGGGCGGCTTCAGCACCGTCTACCTGGCGCGC
CTCGCCGGCTCCGGATCCTCCCAGCTCGCCGCCGTCAAGGTGCACCGCAGCAGCGAGCGCCTGCGCCGCGCCTTCCGGCA
GGAGCTGGACGCGCTGCTCCGCGTCCGCCACCCGCACATCGTCCGCCTCCTCGCCTTCTGCGACCAGCGC----------
--------------------------------------------------------------------------------
-----------------------------------GACGAGGGCGTGCTCGTGCTCGAGTTCGCGCCCAACGGCAGCCTG
CACGACCACCTCCACGGCCGCGACGGCGACGGCAACC---AGGCCGCTCCCGCTGCCACGATGCCGTGGGCGCGGCGCGC
GGCCGTGGCGCTGCAGGTGGCGCGCGCGCTCGAGTACCTCCACGACCGGTGCGAGCCGCAGGTGGTGCACGGCGACGTCA
AGGCCTCCAACGTGCTGCTGGACGCGGCCATGGGCGCCCGCCTCTGCGACTTCGGCTCCGCGCGCGCCGGGTTCTCGGCC
T------------CCGCGGCCGTCCGCACGCCGCGCGCCGTGCAGGGCTCGCCTGGGTACGTGGACCCGCACTACCTCCG
CTCCGGCGTGCTCACAAAGAAGAGCGACGTGTACAGCCTGGGCGTGCTGCTCCTTGAGCTGCTCACCGGCACGCAGCCCT
TCAGC------GACGGCCGGCTCCTGACGTCCGCCGTCGCGCCGATGATCAAGGCCGGCTC------GTGCTCGTGCGAC
GACGTGCCTAGGCTCGTCGACCAGAGGCTTGGGTGCCGGTATGACGCGGACCAGGCGGCCACCGTGGCAACGCTGGCCGT
GGCCTGCGTCGGGGAGAACCCGGCCCTCCGGCCGTCCATGGCCGACGTGGTTCGGACCCTGGAGCAGA------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>chr6D_1132
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------GTGGG
CCGAGGTCGAGTCGGTCACCGGCGGCTTCTCGTCCCGCGTGATCGGCCAGGGCGGGTTCAGCACCGTGTACCTGGCGTCG
CT---------CACCTCCTCCCGCCTCGGCGCCGTCAAGGTGCAGCGGAGCAGCGAGCGCCTCCACCGCGTCTTCCGCCA
GGAGCTCGACGTGCTCATGTCCGTGCGCCATCCCCACATCGTCCGCCTCCTCGGCTACTGCGACGAACGAGGTACACACC
CACCACGATCAGCCTTCGTTTCTTGGTCAACCCATCCACATTACC---AACGAG----------GCAATCGAGTTCTGGC
TGGAGCGCTGATCTTGTTTCTTTCCCGC--GTGCAGAGGAAGGCGTCTTGGTGTTCGAGTACGCTCCCAACGGCGACCTG
CACGAGAGGCTCCACCGGAGCGGCCAGAGGCG---------------------GGCGGCGCTGCCGTGGGCGCGGCGGAT
GGCCGTCGCGTTCCAGGTGGCGATGGCGCTGGAGTACCTCCACGAGAGCCAGGACCCTGCGGTCATCCACGGCGACGTCA
AGGCGTCCAACGTCCTGCTCGACGCCAACATGGACGTCAAGCTCTGCGACTTCGGCTTCGCCCACGTCGGCTTCTCCGCC
GCGGTGCTCCCCGCCGCGGCCAGGGCGTCGGCGCGCCACGTCATGGGCTCCCCGGGGTACGTGGACCCGCACTTCCTCCG
CTCCGGCGTGGCCACCAAGAAGAGCGACGTGTACAGCTTCGGGGTGCTGCTGCTGGAGCTCGTGACCGGGCGGGAGGCCA
TCTGC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>chr6A_1132
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------GTGGG
CCGAGGTCGAGTCGGTCACGGGCGGCTTCTCGTCCCGCGTGATCGGCCAGGGCGGCTTCAGCACCGTGTACCTGGCGTCG
CT---------CACCTCCTCCCGCCTCGGCGCCGTCAAGGTGCAGCGGAGCAGCGAGCGCCTCCACCGCGTCTTCCGCCA
GGAGCTCGACGTGCTCCTGTCCGTGCGCCATCCCCACATCGTCCGCCTCCTCGGCTACTGCGACGAACGAGGTACACACC
CACCACGATCGGTGTCCGTTTCTTGGTCAACCCATCCACATTTCTACGAACGAG----------GCAATGGAGTTCTGGC
TGGAGCGCTGATCTTGATTCTTTCCCGC--GTGCAGAGGAGGGCGTCTTGGTGTTCGAGTACGCCCCCAACGGCGACCTG
CACGAGAGGCTCCACCGGAGCGGCCAGAAGCG---------------------GGCGGCGCTGCCGTGGGCGCGGCGGAT
GGCCGCCGCGTTCCAGGTGGCGATGGCGCTGGAGTACCTCCACGAGAGCCAGGACCCCGCGGTCATCCACGGCGACGTCA
AGGCGTCCAACGTCCTGCTCGACGCCAACATGGACGTCAAGCTCTGCGACTTCGGCTTCGCGCACGTCGGCTTCTCCGCC
GCGGTCCTCCCGGCCGCGGCCAGGGCGTCAGCGCGCCACGTCATGGGCTCCCCGGGGTACGTGGACCCGCACTTCCTCCG
CTCCGGCGTGGCCACCAAGAAGAGCGACGTGTACAGCTTCGGGGTGCTGCTGCTGGAGCTGGTGACCGGGCGGGAGGCCA
TCTGC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSS--------S---S-S--SS-S-SSS-S---SS----S-SS-------S--------
----SS-SSSS-SSS-SS-------S----S----------SSS-SSSS------S----------SS-SS----S--SS
-----S-SSSS-SS-----S-S--------S-S-----S-S----S---S--SS---S--S--S-SS--S------S-S-
-SSSSSS-----------S-S----------------------------------S--------------------S---
----------------------------------------S---------------------------------------
--------------------------------------------SSS---------------------------------
-----------------------------------------------------------------------------S--
--SS-----------------------S-------------------------SS------S------------------
------S-----------------S--------S--S------------------S-SS---------------------
---------------------------------------------------------S----------------------
----------------------------S---------------------------------------------------
------------------------------------------------------------S------S-SSS--------
----------------------------------------------------------------------S----S----
S-------------------------------------------------------------------------------
S-----------S--------------------------------------------S----------------------
----------------------------------------------------S---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------SS-------------------
------------------------S------------------S------------------------------------
------------------------------------------------------------------------S-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
------------------------------S-------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
-------------S----------------------------------S-------------------------------
-----------------------------S-------------S--------S-----------S--------------S
SSS------------------------------------------SSS--------------S---------------S-
S-----------------SSSSS---------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS------------------------------------SSSS-------------------
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S-----------S----------------------------
-------------S------------------------------------------------------------------
---------SSSSSS--------------------------SS-------------------------------------
--------------S-----S---------------------------SS-SSS---SSS--------------S-----
---------------------S------SSSS------------------------------------------------
-----------------SS--S--------------------S----S----
>forward_665
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----GCCCATGACTGATTTCGTGC-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>reverse_2400
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------G
GCGAACAAAGCGGTAGTAG-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
