>input_sequence_59669
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--------------------------------------------------------------------------ATGGCA
GAGGGTGTGATTCTTTTAGCCGTGACGAAGATTGGCATTGCTTTGGGAAATGAAGTGATAAATAAAGCTGGTCCGCTGTT
CAGAAACGTCAAAGCACAGGTAGCAGAACTCCAAGGTGGAATGAGCCGTATAAGTTGCGAGCTTAGGCTGATGCATGAGT
TTCTTTGTACAATGGATGTACGCAATCGGAAGGACCAGGCATATGGAGTTTGGATGGAGGAAGTGCGGAAAGTAGCACAC
CGGATTGAGGACATAGTAGATGAGTATCTACACCTGGTAGGGAAGAGACATGAAATTGGATGGAGGTTTTATCTCATGAA
AGGATTCAAGCAACCAGAAGATTTGCTTTCTCTAACCCAGATAGTCTCCCAGATAAAGGAAGCAGAGACCAGTCTTGTGC
ACCTATTCAAAGCAAGAGAACGATGGGTTCCAATGGCAAACAACGGCCCTGCTGATAACTCTGCCTATATTGTTGAGAGG
TCCCAACATCTTGCAAGCACTTCTCGTTCTATCAGTG---AAGATCTTGTGGGGGTCGAGGAAAACAGAAAGAAACTACA
GAAGTGGCTAGGGGATC------ATGTGAAGGAACGCTCTATAGTAGTACTGTATGGCATGGGAGGCCTTGGCAAAACTG
CTCTAGCTGCAAATGTGTATAATGAGAAGAGAGAAAAGTATGACTGCCATGCATGGGTGTCTGTCTCACAAACATATTCT
CCAATAGAGCTCTTGAGGAAACTATTTAAGGAACTTCACCGTGATGGGGAAACTGCTCCTTCCGAGATCACTACAATGGA
CTTGATCAATATAAAAGGTAAACTCAGCAAGTTTCTAGAGCAGAAGAGATACCTGATTGTGCTGGACGATGTCTGGAAAC
AAGAAGCATTCAGTGATTTGTTAGGAGAACTTGCCCCAAATACTAAAGGAAGCAGAATAGTCATTACGACGCGCAATGAC
GATATAGCTCGGCTGGCGTCCAAAGGACGTGCACTAAAAAGTGAATGCTTGCCAGATGACAAGGCATGGTTACTCTTCCG
TAGGAAAGCTTTTCGGAGGGAGGAAGATTATGAATGCCCTACAGAGCTGAAGGGCTACTCAGAGCAGATAGTGGCCAAGT
GTAAGGGCTACTCAGAGTAG------------------------------------------------------------
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>chr2B_1_TraesCS2B01G078000
GACTCTTAACTCTAAATCGTAATCTTGATTTTAGTTTCTCTTTCCATCCAGTTCTTGCAGTTCCACATCTGATCCTGTCC
TTGTTGGTTTTAGAACG-TAGCTCGATTCACCCAGATGCAGCACATGTACGTGCAAAGCTAGCTCCAAACAAGCACACAA
GCAGCTTGATT-----------------------GTGCGTGTCTTGCCGTATGTATACTCGAACTAGAGGCTAGCCTCAA
CTTGGCAGA--GTCTCGTGGCGACTCGCATAACTTGCGAACGGAAAAAACAGATCAGAGATTTTTGGTTAGTCACATACT
CACATGGGCGCGTCGCTCCTTGCCTTTATTT-ATTGCTTCGATGATCTAGTTTACAACATGGGGTTACATAGTACTCCCT
CTGTAAACTAATATAAGAGCGTTTAGATTACTAAAGTAGTAATCTAAACACTCTTATATTAGTTTACGGAGGGAGTATAA
ATTGCAGCTAAACTAGTCAATATCTATCCTACTCGGTGATTGCCTCCAAGCCC--ACCGGACAAGGACTAGATGTCGTGG
TTAATTCCCACAGTCCTCATATCCAATCCATGAATCTTTTACCCGCAACTTGCTCATGCCTATTCTCCTACATATAAAGT
CCAAAATGTCATCTGACTTATAAATCTCGCAATGGACCAACTATGGCCTCTTAAGATTCTCCAGCGACTGCGTCATAATA
TTAACTGTATTTTTCTCTCTTTTTAATTGCGAATCACGCAATAGCCCCAAGACACCATAATCTTTTGACGATCTCCTAAG
CTGCTGGTCTAATTTCTCATCTTTTTTATGGGATGACTTGGTAGCACCACATGGGAGTGTATGATTTCTGCTGATA----
GTATGGCATTTTTATTTCTCTTTGAAGCACACTAATTCTTGCGCAAAATAAAAGGCACTAACACAAACCGT-CTCTGTCT
GCAGATTGCAAGCTATATTCTGATGTGCCCTTTTTGAGCTGTGAAATTCTGTGGATTAACTACCACAGAGAATAATGGCA
GAGGGTGTGATTCTTTTAGCCGTGACGAAGATTGGCATTGCTTTGGGAAATGAAGTGATAAATAAAGCTGGTCCGCTGTT
CAGAAACGTCAAAGCACAGGTAGCAGAACTCCAAGGTGGAATGAGCCGTATAAGTTGCGAGCTTAGGCTGATGCATGAGT
TTCTTTGTACAATGGATGTACGCAATCGGAAGGACCAGGCATATGGAGTTTGGATGGAGGAAGTGCGGAAAGTAGCACAC
CGGATTGAGGACATAGTAGATGAGTATCTACACCTGGTAGGGAAGAGACATGAAATTGGATGGAGGTTTTATCTCATGAA
AGGATTCAAGCAACCAGAAGATTTGCTTTCTCTAACCCAGATAGTCTCCCAGATAAAGGAAGCAGAGACCAGTCTTGTGC
ACCTATTCAAAGCAAGAGAACGATGGGTTCCAATGGCAAACAACGGCCCTGCTGATAACTCTGCCTATATTGTTGAGAGG
TCCCAACATCTTGCAAGCACTTCTCGTTCTATCAGTG---AAGATCTTGTGGGGGTCGAGGAAAACAGAAAGAAACTACA
GAAGTGGCTAGGGGATC------ATGTGAAGGAACGCTCTATAGTAGTACTGTATGGCATGGGAGGCCTTGGCAAAACTG
CTCTAGCTGCAAATGTGTATAATGAGAAGAGAGAAAAGTATGACTGCCATGCATGGGTGTCTGTCTCACAAACATATTCT
CCAATAGAGCTCTTGAGGAAACTATTTAAGGAACTTCACCGTGATGGGGAAACTGCTCCTTCCGAGATCACTACAATGGA
CTTGATCAATATAAAAGGTAAACTCAGCAAGTTTCTAGAGCAGAAGAGATACCTGATTGTGCTGGACGATGTCTGGAAAC
AAGAAGCATTCAGTGATTTGTTAGGAGAACTTGCCCCAAATACTAAAGGAAGCAGAATAGTCATTACGACGCGCAATGAC
GATATAGCTCGGCTGGCGTCCAAAGGACGTGCACTAAAAAGTGAATGCTTGCCAGATGACAAGGCATGGTTACTCTTCCG
TAGGAAAGCTTTTCGGAGGGAGGAAGATTATGAATGCCCTACAGAGCTGAAGGGCTACTCAGAGCAGATAGTGGCCAAGT
GTAAGGGCTACTCAGAGTAGAATGTGTACGATAAAGAATGTTTTTAAAAAATCTTATTTTCTAAAATGTTACACGTGTAT
ATAAAAAATGGCCCTGGTGGATACAAAAATGTGCAATATGTATAGGAAAAGTAGACATCAAAAATAAAAGTTGCAAAAAA
TGTTAGTCAAGTGTTTAGACAATTCTAAACATGTATATAATAAATGTTTGTAGTGTATAGGAAAAATATAGAAATGTGTA
TGAAAAAGTAGACGTCAAAAACATAAGTATGTTGGAAAAAACATTAATCATGTATTTATTAAAAATGGGCAGAATAAAAA
ATTATTACATAACAAATGTCCAGCAAGTATTCAAAATAGTGTTCATAACATGTTTTTCAAGAAACATGTACATCGTGTAT
TGGAGAAATGTAGAACGTGTATCAGGAAAATGTTTTATGTGTACATTGTGCACTAAAAAAATAGATATGTGTTTGAAGGA
ATAGAAAAATGATGAAAAACGACAAAGAAACATGAAGAAAGCAAAGGAAAACTAGAAAGAATCCAAAGAAAATCAAAGTA
TTATGAAAAAAACCGAGGGAAGAAAGAAAATAAGACAGAAAAAAATGAGAAAACAAGAAACTGGAGAAAGCCCAGTGCAG
AAAAGAAAAGGAAACAAAGAAAATGGAAGGAAACCAAGGGAAAAAACAACTAAACTGAAGGAAAATGGAAAAGAAAGGAA
AAAACAGGAAAGAAACAAAGAAAAGAAAAAAAGACCCAGTAAAAACTGATAGAGAAATGAAGAAAATGGTTAAAATAATA
AAACCGGAGAAAAAAGAAAAGAAAAAGAAAACTATTGTAGAAATAGAGAAAACCAAAAGAAAAAAAGATAGAAACAAAGT
GAACTAGCAAAGCGAATGCATCGAACGTAGTGAGAGCAGTAGCTGCGAGCGAACGAACGGGTCGGACTAGTACTGTAGCA
TGCAGGGAAAAGCTTCAGTGAGACGGTAGATACTCTCATTATAAACGAAACGTAGTTCTT
>chr2D_1
GACTC-TAACTCTAAAACATAATCTTGATTTTAGTTTCTCTTTCCATCCAGTTCATGCAGTTCCATATCTGATCCTGTCC
TTGTTAGTTTTATAACGCTAGCTGGATTCACCCAGATGCAGCACATGTACGTGCAAAGCTAGCTCCAAACAAGCACACAA
GCAGCTTGACTGATTTCCTGCCTAGCAACAGTACGTGCGTGTCTTGCCGTATGTATACTTGAACTAGAGGCTAGCTTCAA
CTTGGCAGAACGTCTCGTGGCGACTCGCATA-CTTGCAAACGAAAAAAACAGATCGGAGATTTTTGGTTAGC--------
CACAGGGGCGTGTTGCTCCTGGCTTTGTCTTCATTGCTTCGATGATCTAGTTTACAACGTGGGATTACATAG--------
--------------------------------------------------------------------------GTATAA
ATAGCAGCTAAACTAC-CAATATCTATCCTATGCGGTGATTGCCTCCAAGCCCGTACCGGACAAGGAGTGCACGTCGTGG
TTAA-TCCCACAGTCCTCATATCTGATCCATGA-TCTTTTACCTGCAACTTACTCACGCCTATTCTCCTATCTATAAAGT
TCAAAATGTCATCTGACTTATAAATCTTGCAACGGATCAACTATGGTCGCTTAAGATTCTCCAGCGACCGCATCATAATA
TTTATTATATTTTGCTCTCTTTTTAATAGTGAATCCTGCAATAGCCCCAAGACACCATAAT-TTTTGACGATCTCGTTAG
CTGATGGTCTAATTTCTCATCTTTTTTATGGGATGGCTTGGTAGCACCACATGGGAGTGTATGATTTCTACTGATAGCCA
GTATGGCATTTTTATTTGTCTTTGAAACACACAAGTGCTTGCGCAAAATAAAAGGCACTAACACAAACCAAACTCTGTCT
GCAGATTCCAAGCTATATTCTGATGTGCCCTTTTTGAGCAGTGAAATTCTGTGGCTTAACTGCCACAGAGAATAATGGCA
GAGGGGGTGATTCTTTTAGCGGTGACGAAGATTGGCACTGCTCTGGGAAATGAAGTGATAAACAAAGCTGGTCCGCTGTT
CAGAAACTTCAAAGCACAGGTAGGAGAACTCCAAGGTGGAATGAGCCGTATAAGTTGCGAGCTCAGGCTGATGCATGAGT
TTCTTTGTACGATGGATATACGCAATCGGAAGGACCAAGTATATGGAATTTGGATGGAGGAAGTGCAGAAAGTAGCACAC
CGGATTGAGGACATAGTAGATGAGTATCTATTCCTGGTAGGGCAGAGACATGACATTGGATGGAGGTTTTATCTGATGAA
AGGATTCAAGCAACCAGAAGCTTTGCTTTCTTTAAACCGGATAGTCTCTCTGATAAAGGAAGCAGAGGCCAGTCTTCTGC
ACCTCTTCCAAGCAAAAGACCGATGGGTTCCAATGGCAAACAACGGCCCTGCTGATAACTCTGGCTATATTGTTGAGAGG
TCCCAACATCTTGCAAGCACTTCTCATTCTATTAGTGATGAAGATCTTGTGGGGGTTGAGAAAAACAAAAAAGACCTACT
GGAGTGGCTAACAGTAACAGATAATGAGATGGAAGGCTCTACAGTAGTACTGTATGGCATGGGAGGCCTTGGCAAAACTG
CTCTAGCTGCAAATGTGTATAAACAGCAGAGAGAAAACTATGACTGTCATGCATGGGTATCTGTCTCACAAACATATTCG
CCAATAGATCTCTTGTGGAAACTATTTAAGGAACTTCATCGTGATGGGGAAACTGCTCCGACCGAGATCAATACAATGGA
CTTGATCTATATAAAAGGTAAACTCAGCAAGTTTCTAGAGCAAAAGAAATACCTGATTGTGCTGGACGATGTCTGGAAAC
AGGAAGCATTCAATGATTTGCTAGGAGGACTTGCCCCAAATACTAAAGGAAGCAGAATAGTCATTACGACGCGCAATGAC
GATATAGCTAAGCTGGCGTCCGAAGGACGTGCACTAAAAAGTGAATGCTTGCCATATGATGAGTCAAGGTTACTCTTCTG
TAAAAAAGCTTTTCGGATGGATGA--------------------------------------------------------
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>chr2A_1
GACTCTTAACTGTAAATCATAATCATGATTTTAGTTTCTCTTTCCATCCAGTTCTTTCAGTTCCACATCTGATCCCGTCC
TTGTTGGCTTTAGAACGCTAGCTCGATTCACCCAGATGCAGCACATATACATGCAAAGCTAGCT----------------
------TGATTGATTTCGTGCCTAGCCACAGTACGTGCGTGTCTTGCCGTATGTATTCTTGAACTAGAGGCTAGCTTCAA
CTTGGCAGAACGTCCCGTGGCGACTCGCATAACTTGCGATCGGAAAAAACAGATCGGAGATTTTTGGTTAGCTTCAAATG
TGTATACTT-----------------------------------------------------------------------
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-------------------------------GAACTAGATATTGGTAGTTTAGCTGCTATTTATACCTATGTA-------
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---------------------------------ATCCCACATTGTAAACTAGATCATCGAAGCAATGAAGAAAAAGCGAG
GAGATTTTTGGT--------------------------------------------------------------------
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---TAGCTGCAAATGTGTATAATGAGAAGAGAGAAAAGTATGACTGCCATGCATGGGTATCTGTCTCACAAACATATTCG
CTAATAGAGCTCTTGAGGAAACTATTTAAGGAACTTCATCGTGATGGGGAAACTGCTCCCACCGAGATCACTACAATGGA
CTTGATCAATATAAAAGGTAAACTCAGCAAGTTTCTAGAGCAAAAGAGATACCTGATTGTTAGGAGAACTTGCCCCAAAT
----------------------------ACTTGCCCCAAATACTAAAGGAAGCAGAATAGTCATTACGACGCGCAATGAC
GATATAGCTCGGCTGGCGTCCAAAGGACGTGCACTAAAAAGTGAATGCTTGCCAGATGACAAGGCATGGTTACTCTTCCG
TAGGAAAGCTTTTCGGAGGGAGGAAGATTATGAATGCCCTACGGAGCTGAAGGGCCACTCAGAGCAGATAGTGGCCAAGT
GT------------------------------------------------------------------------------
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>SNPs
------------------S-------------------------------------------------------------
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-----------------------------------------------------------S---------------S----
-------------------------------------------------------S---------------SSS--S-SS
----------S--S------S--S--SSS-----------------------------S----S--------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
--S------------SS--------------SS----------------------------------S-SS-S-------
----S------------------SS--------S---------S-------S----S-------------SS--------
S--------------------------S----S---S---------S-S-------------------S--S--------
--S-S-S------S-------------S-S-----SS------------------------S-------------S-S--
---S-------------------------------S---------------------------------S----------
-----------------S--------S-----S-S-S--------------------------------SS---------
-------S-------------------------------S--------------S------S------------------
-----S--------------S----------------S----S-------------------S-----------------
-------S---------------S---------------------------------------S----------------
----------S------S---------------------S--------------------------S-------------
------------------------------SS----------S----------S--------------------S-----
--------------------S----------S--------------------------------------------S---
----S---S------S---S-------------------------------------------S----------------
-------------------------S------S-----------------------S---S------S---SS-S----S
-S--------SSS-SSS---------S--S----S------S--------------------------------------
----------------------------------------------------------S--------------------S
--------------------------------------S--------------------SS-------------------
------------------------------------------S-------------------------------------
-S----------S-------S------S----------------------------------------------------
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------------------------------------------S------------S------------------------
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_331
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-----------------------------------------------------------------------TCACATACT
CACATGGGCGC---------------------------------------------------------------------
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>reverse_1218
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-----------------GTACGCAATCGGAAGGACCA-------------------------------------------
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>forward_1128
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--------------------------------------------------------------------TGGTCCGCTGTT
CAGAAACG------------------------------------------------------------------------
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>reverse_2783
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--------------------------------------------------------------GGAGAAAGCCCAGTGCAG
AA------------------------------------------------------------------------------
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