>input_sequence_59664
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------------------------------------------ATGAGGAAGACGGTGGTGGGCTCCGCCTCCACGGGGGG
AGGCTGGCCGTGCGGTCTGAACCTCAACGTGGTGTTCCTGCTCTCCATGGTGGCCACCAACCTGCTCTCCCTCTACCACC
TCTCCATCCGCGCCTCCCCCACCACGCCGGCGCTCCAATCCGGCTCCGACTTCGACCAGCAGCAGGTCCTCCAGCAGCTC
AGCGCCATCCGCGCCACCGTCTCCCACCTCCGGTCCGCCACCCCTCCCCCGCCCCCCGAGCTCGTCCTCTACTCGCGCCT
CGCCCCCGTCGCCTCCGCCTGCTCCGCGCACCCCGACCTCCTCCACCGCTTCATGTCCTATGTCCCCTTCGCCGCCTGCC
CCGACGACGTCCACACCCTCGCCGAGCCTCTCATCCTCCGCGGCTGCCACCCGCTCCCCAGGCGCCGCTGCTTCTCCCCG
ACGCCCGATGCCGGATCCGTCCAGCTCCCCACAGACCCCTTCGCGCCGCTCCCCGACTCCGCCGTGCGCTGGCCGACGGA
CGCCAAGAAATGCAGGTCCTTCTCTTGTCTGCCGGCGTCGCTCGGGTTCGACGTGGCGCGGACGGAGGCCGGCAAGTTCC
TCCGGTCGCTGGGGCCTCTGGACCTGACGGTGCCGCAGCTGCTGCGTCTGGCGTCGATGAGCCGCGCGGGGCCCATCCGG
CTGGGGCTGGACGTGGGCGGCGGCACTGGGACGCTGGCGGCGCGGCTGAAGCGGGCGGCGAACGCCACGGTGCTGACGAC
GACCATGGACCTGGGCGCGCCCTACTCGGAGGCCGCGGCGGCCCGCGGGGTGGTGCCGCTGCACGCGCCGCTGCAGCAGC
GGTTCCCCGTGGGGGACGGGACGATGGACCTGGTGCGGGCGGGGCACGCGGTGAACCGGTGGATCCCGGAGCCGGCACTG
GAGTTCCTGTGGTACGACGCGGACCGGGTGCTGCGCCCGGGCGGGCTGCTCTGGGTGGATCACCTCTGGTGCCGGAAGGG
CGACCTCGACGGCGTGTACGCAGCCATGCTGCGGAGGCTGGGCTACAAGACCATCAAGTGGGCCGTCGCCGACAAAACCG
GCATTGGCGCCAAGGACGAGCTCGTCTACCTCACCGCGCTGCTGCAGAAGCCATTCTAG---------------------
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>chr1D_1_TraesCS1D01G199800
CCTTATTCCTAATCCTCCCTCTTCCTTAGAGTTACAAATATCCTTCCAAGCTCGGAGGCAAAGGCTCTTTTTGGAATCAC
TTTCTCGAACACCTGTCCACCAAAAGTTCCTAATGATTGCAGTAAGTTTAGCTATGAACTTCTTGATAAACAAGATGTTA
GCCATATAATAAACAGGTATAGCCGAGAAAACCGAACGAATCAATTCTAATCTCGCAGCATGGGAAAGCATATTAGCTTT
ATAAGTAGGCAGCTTATTCAGAAATTTTTCAATGACAAAGTTGTAAGCCGAAGCTCTATTCTTAGCTGGAAGCACAAGAG
GATGACCAAGATGAACAAAACTTCTATCCAAGTTAGAAACCGGAAAAATCTGCTTGATAGCATGAATTATAGCTTAAGGA
ACGCGAGAGCTGAAAAGAATGGCTGATTTAGCCCAGTTTGGACAGGCAAGTCTTCAAGAGACTCATTCTATGACTCAAAT
CATTAACACTTAAATTGTTGTTGTCTGCTATTTCTACATCTTTGTAATAATTAGGGGAGACATTGTTTTTGAAAGGATGA
TGTTTTCCTTGCAAATATAAACAAAATGCTGCTGAAATTTTGTATTTTTGTTATTCCATTCTTTATTTCGTGCTTGCGAA
CCAAACACATGAACGGAACTATTCCATTCTACTTTTTGCTCGTACCGAACATAGGAACGGAACCGACTCGTTGTTCCTCT
GGAATGGAATCATTTCATTTCATGACAGTTAATTCCTGAACCAAACACATCCTTAGATGCTGCTTGTACGAATTTTTGTT
TTATTTATAAAGAACGAAGCGACGGACGGTAAGCAAAGGCAGTGGTCAACAAAAGTCTCCGCACTGCAGTCCACATCCGA
CAGCACCGCACCGACACAAATCTCCTCTCACGCACTCTCACACACCGGCAC--CACTCTGCCACTCGCTCTCGCGGAGTG
AAGGCACGGGAAAGAGGGGAAAGGGGATCGGATCGACCGGCGATGAGGAAGACGGTGGTGGGCTCCGCCTCCACGGGGGG
AGGCTGGCCGTGCGGTCTGAACCTCAACGTGGTGTTCCTGCTCTCCATGGTGGCCACCAACCTGCTCTCCCTCTACCACC
TCTCCATCCGCGCCTCCCCCACCACGCCGGCGCTCCAATCCGGCTCCGACTTCGACCAGCAGCAGGTCCTCCAGCAGCTC
AGCGCCATCCGCGCCACCGTCTCCCACCTCCGGTCCGCCACCCCTCCCCCGCCCCCCGAGCTCGTCCTCTACTCGCGCCT
CGCCCCCGTCGCCTCCGCCTGCTCCGCGCACCCCGACCTCCTCCACCGCTTCATGTCCTATGTCCCCTTCGCCGCCTGCC
CCGACGACGTCCACACCCTCGCCGAGCCTCTCATCCTCCGCGGCTGCCACCCGCTCCCCAGGCGCCGCTGCTTCTCCCCG
ACGCCCGATGCCGGATCCGTCCAGCTCCCCACAGACCCCTTCGCGCCGCTCCCCGACTCCGCCGTGCGCTGGCCGACGGA
CGCCAAGAAATGCAGGTCCTTCTCTTGTCTGCCGGCGTCGCTCGGGTTCGACGTGGCGCGGACGGAGGCCGGCAAGTTCC
TCCGGTCGCTGGGGCCTCTGGACCTGACGGTGCCGCAGCTGCTGCGTCTGGCGTCGATGAGCCGCGCGGGGCCCATCCGG
CTGGGGCTGGACGTGGGCGGCGGCACTGGGACGCTGGCGGCGCGGCTGAAGCGGGCGGCGAACGCCACGGTGCTGACGAC
GACCATGGACCTGGGCGCGCCCTACTCGGAGGCCGCGGCGGCCCGCGGGGTGGTGCCGCTGCACGCGCCGCTGCAGCAGC
GGTTCCCCGTGGGGGACGGGACGATGGACCTGGTGCGGGCGGGGCACGCGGTGAACCGGTGGATCCCGGAGCCGGCACTG
GAGTTCCTGTGGTACGACGCGGACCGGGTGCTGCGCCCGGGCGGGCTGCTCTGGGTGGATCACCTCTGGTGCCGGAAGGG
CGACCTCGACGGCGTGTACGCAGCCATGCTGCGGAGGCTGGGCTACAAGACCATCAAGTGGGCCGTCGCCGACAAAACCG
GCATTGGCGCCAAGGACGAGCTCGTCTACCTCACCGCGCTGCTGCAGAAGCCATTCTAGCCAGGCTGCAGATGTGGACAC
ATGCTTATCTGATATCTGCAAGTGTTGGGAGCTTTTGTGATTCATCCATGGTCGCACGTTCACGTTCCTTCCCGCTCAAG
TGCCATATGCTGTCGATGTGCAAGCAACGATTTGCAAAATGCAGTGATGTGCAGGAAGGTTGGAAACAGTTAC----CAT
TCATTTTTAAGAGATCTTTCAACGAGCCGACGATTTCCGAT-TTTCAGTGGTCACCGCAGGAGACGATGAAGGCGGCTAG
AAACTCCTTTCTTTCTCAGGTAGAAAG-----CTAGAGACACTAGTAAACCGATCACCGGCCATACTTTCGAAGTGATCA
GATTTGGATATGAACTCGTTTATTTAATCAAATAAGATCAAAATGGATCACCGGTCACGTAACT----------------
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-----------GCCATGTCAGCATACCTTGGACCCCTCGTGTTTGAGTTTT-TTGTTAACACAGTACAATCGAAGT----
-ACACCCACGAGTATACACTCACCATTATGAACTCACACACGCATCCATATCCTATCCTTATAAGCACTTTTGAAAGACT
GAGTCAGCATAACATCTTGAATTGGCGAAGTGCTCACGCTTGAGTTAATAATGCGTAGAGGATGTTTTTTGCAAACGGTC
GGTCACA--------ATGTAGTCAATGGCATATCGATGATTTTTTTTGTTTAAAAAAAAGACTTTTTCACATTGCAAGGG
TCTCATACCCACAACCTAAGGGCAAGAATTAGTTGACCACGAAAATTCGCAGGGGCATGCACCTCCACAGCCGTCTACGA
TCGTTGATGCGCATCATGATCCGAAAATTTATTTTGTCTGAAATTGCATGAAAAGAGAGATGAAAACTAGGAATCTTGTC
AATACGACAAGATATCCTTGTGCTAATACATCATCCAACCGTTCTGTTGAAATATGTCCAAGAGGTAATAATATTGTATT
ATTGTATTTCTCTGTTCATAATTAAAAGTTTCTATTCTATTCTATAACTGTTATGATCCTGAATATGCGA
>chr1A_813
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------------AACAAAGCGACGGACGGTTAGCAAAGACAGCGGTCAACAAAAGTCTCCGCGCTGCAGTCCACATCCGA
CAGCACAGCACCGACACAAATCTCCTCTCACGCACTCACACACACCGGCACACCACTCTGCCACTCGCTCTCGCGGAGTG
AAGGCACGGGAAAGAGGGGAAATGGGATCGGATCGGCCGGAGATGAGGAAGACGGCGGTGGGCTCCGCCTCCGCGGGTGC
AGGCTGGCCGTGCCGTCTGAACCTCAACGTGGTGTTCCTGCTCTCCATGGTGGCCACCAACCTGCTCTCCCTCTACCACC
TCTCCATCCGCGCCTCCCCCACCACGCCGGCGCTCCAATCCGGCTCCGACTTCGAGCAGCAGCAGGTGCTCCAGCAGCTC
AGCGCCATCCGCGCCACCGTCTCCCACCTCCGGTCCGCCACCCCTCCCCCGCCCCCCGAGCTCGTCCTCTACTCCCGCCT
CGCCCCCGTCGCCTCCGCCTGCTCCGCGCACCCCGACCTCCTCCACCGCTTCATGTCCTACGTCCCCTTCGCCGCCTGCC
CCGACGACGTCCACACCCTCGCCGAGCCTCTCATCCTCCGCGGCTGCCACCCGCTCCCCAGGCGCCGCTGCTTCTCCCCG
ACGCCCGACGCCGGATCCGTCCAGCTCCCCACCGACCCCTTCGCGCCGCTCCCCGACTCCGCCGTGCGCTGGCCGACGGA
CGCGAAGAAATGCAGGTCCTTCTCTTGCCTGCCGGCGTCGCTCGGGTTCGACGTGGCGCGGACGGAGGCCGGCAAGTTCC
TCCGGGCGCTGGGGCCTCTGGACCTGACGGTGCCGCAGCTGCTGCGTCTGGCGTCGATGAGCCGCGCGGGGCCCATTCGG
CTGGGGCTGGACGTTGGCGGCGGCACGGGGACGCTGGCGGCGCGGCTGAAGCGGGCGGCGAACGCGACGGTGCTGACGAC
GACCATGGACCTGGGCGCGCCCTACTCGGAGGCCGCGGCGGCGCGCGGGGTGGTGCCGTTGCACGCGCCGCTGCAGCAGC
GGTTCCCCGTGGGGGACGGGACGATGGACCTGGTGCGGGCGGGCCACGCGGTGAACCGGTGGATCCCGGAGCCGGCGCTG
GAGTTCCTGTGGTACGACGCGGACCGGGTGCTGCGGCCGGGCGGGCTGCTCTGGGTGGACCACCTCTGGTGCCGGAAGGG
CGACCTCGACGGCGTGTACGCCTCCATGCTGCGGAGGCTGGGCTACAAGACCATCAAGTGGGCCGTCGCCGACAAGACCG
GCATTGGCGCCAAGGACGAGCTCGTCTACCTCACCGCGCTGCTGCAGAAGCCATTCTAGCCAGGCTGCAGATGTGGACAC
ATGCTTATCTGATCTCTGCAAGTGTTGGGAGCTTTTGTGATTCATCCATGGTCGCACGTTCACGTTCCTTCCCACTCAAG
TTCCATATGCTGTCGATGTGCAAGCAACGATTTGCAAAATGCAGTGATGTGCAGGGAGGTTGGAAACAGTTACGTACCAT
TCATTTTTAAGAGATCTTTCAACGAGCCGACGATTTCCGATCTTTCAGTGGTCACCGCAGGAGACGATGAAGGCGGCTAG
AAACTCCTTTCTTTCTCAGGTACTAGAAAGTTCTAGAGACACTAGTAAACAGATCATCGGCCATACTTTCGAAGTGATCA
GATTTGGATATGAACTCGTTTATTTAATCAAATAAGATCAAAATGGATCACCGGTCACGTAACT----------------
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-----------GCCATGTCAGCATACCTTGGACCCCTCGTGTTTGAGTTTT-T--TTAACACAGTACAATCGAAGTCACT
CACACCCACGAGTA-----TCACCCTTATGAACTCACACACGCATCTATATCCTACCCTTATAAGCAATTTTGAAAGACC
AAGTCGGCATAACATCTTGAATTGACGAAGGGCTCATGCTTGAGTTAATAATGCGTAGAGGATGTTTTTTGCAAACTGCC
AGTCACA--------ATGTAGTCAATGGCATATCGATGAGTTTTTTTAAAAAGACT------TTTTTCACATTGCAAGGG
TCTCATACCCACAACCTAAGGGCAAGAATTAGTTGACCACGAAAATTCGCAGGGGCATGCACTTGCACAGCCGTCTACGA
TCGTTGATGCGCGACATGATACAAAAATTTATTTTGTCTGAAATTACATGAAAAA--AGATGAAAACTAGGAATCTTGTC
AATATGACAAAATATCCTTGTGCTAATACTTCATCCAACCGTTCCGTTGG---ATGTCCTAGAGGCAATAATATTGTATT
ATTACATTTCTCTGTTCATAATTAAGAGTTTATATTCTATTCTATAATCGTTATGATCCTGAATACGCGA
>chr1B_830
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-----------------------------TAAGCAAAGACAGCGGTCAACAAAAGTCTCCGCCCTGCAGTCCACATCCGA
CAGCACAGCACCGACACAAATCTCCTCTCACGCACTCACACACACCGGCAC--CACTCTGCCGCTCGCTCTCGCGGAGTG
AAGGCACGGGAAAGAGGGGAAAGGGGATCGGATCGGCCGGCGATGAGGAAGACGGTGGTGGGCTCCGCCTCCACGGGTGC
AGGCTGGCCGTGCAGTCTGAACCTCAACGTGGTGTTCCTGCTCTCCATGGTGGCCACCAACCTGCTCTCCCTCTACCACC
TCTCCATCCGCGCCTCCCCCACCACGCCGGCGCTCCAATCCGGCTCCGACTTCGACCAGCAGCAGGTCCTCCAGCAGCTC
AGCGCCATCCGCGCCACCGTCTCCCACCTCCGGTCCGCCAGCCCTCCCCCGCCCCCCGAGCTCGTCCTCTACTCGCGCCT
CGCCCCCGTCGCCTCCGCCTGCTCCGCGCACCCCGACCTCCTCCACCGCTTCATGTCGTACGTCCCCTTCGCCGCCTGCC
CCGACGACGTCCACACCCTCGCCGAGCCTCTCATCCTCCGCGGCTGCCACCCGCTTCCCAGGCGCCGCTGCTTCTCCCCA
ACACCTGACGCCGGATCCATCCAGCTCCCCACCGACCCCTTCGCGCCGCTTCCCGACTCCGCCGTGCGCTGGCCGACGGA
CGCGAAGAAATGCAGGTCCTTCTCTTGCCTGCCGGCGTCGCTCGGGTTCGACGTGGCGCGGACGGAGGCCGGCAAGTTCC
TCCGGTCGCTGGGGCCTCTGGACCTGACGGTGCCGCAGCTGCTGCGTCTGGCGTCGATGAGCCGCGCGGGGCCCATCCGG
CTGGGGCTGGACGTGGGCGGCGGCACTGGGACGCTGGCGGCGCGGCTGAAGCGGGCGGCGAACGCGACGGTGCTGACGAC
GACCATGGACCTGGGCGCGCCCTACTCGGAGGCCGCGGCGGCGCGCGGGGTGGTGCCGCTGCACGCGCCGCTGCAGCAGC
GGTTCCCCGTGGGGGACGGGACGATGGACCTGGTGCGGGCGGGGCACGCGGTGAACCGGTGGATCCCGGAGCCGGCGCTG
GAGTTCCTGTGGTACGACGCGGACCGGGTGCTGCGCCCGGGCGGGCTGCTCTGGGTGGATCACCTCTGGTGCCGGAAGGG
CGACCTCGACGGCGTGTACGCGGCCATGCTGCGGAGGCTGGGCTACAAGACCATCAAGTGGGCCGTCGCCGACAAGACCG
GCAATGGCGCCAAGGATGAGCTCGTCTACCTCACCGCGCTGCTGCAGAAGCCATTCTAGCCAGGCTGCAGATGCGGACAC
ATGCTTATCTGATCTCTGCAAGTGTTGGGAGCTTTTGTGATTCATCCATGGTCGCACGTTCACGTTCTTTCCCACTCAAG
TGCCATATGCTTGCACATCGTCTCCTGCAGGATTCCCACTCAAGTTACCA---------------------------CAT
TCATTTTTAAGAGATCTTTCAACGAGCCGACGATTTCCGATCTTTCAGTGGTCACCGCAGGAGACGATGAAGGCGGCTAG
AAACTCCTTTCTTTCTCAGGTAGAAAG-----CTAG---------TAAATCGATCACCGGCCATACTTTCGAAGTGATCA
GATTTGGATATGAACTCGTTTATTTAATCAAATAAGATCAAAATGGATCACCGGTCACGTAACTTTTTTTTAGGGCACGT
AACTGCCATGTCAGCATACCTTGGACCCCTCGTGTTTGAGTTTTTTTGCCATGTCAGCATACCTTGGACCCCTCGTGTTT
GAGTTTTTTTTGCCATGTCAGCATACCTTGGACCCCTCGTGTTTGAGTTTTTT--TTAACATAGTACAATCGAAGTCACT
CACACCCACGAGTATACACTCACCTTATGAAACTCACACGCACATTCATATCCTACCCTTATAAGCACTTTTGAAAGACT
GAGTGGGCATAACATCTTGAATTGGCGAACTGCTCACGCTTGAGTTAATAATGTGTGTAGGATGTTTTTTGCAAAATGAC
TGTCACAATGTAGTCATGTAGTCAATGGCATATCGATGATTATTTTTTCT--AAAAAAAGACTTTTTCACATTGCAAGGG
TCTCATACCCACAACCTAAGGGCAAGAATTAGTTGACCACGAAAATTCACAGGGGCATGCACCTGCACAGGCGTCTACGG
TCGTTGATGCGCGTCATGATCCGAAAATTTATTTTGTCGGAAATTGCATGAAAAGAGAGATGAAAACTAGGAATCTTGTC
AATACGACAAAATATCTTTGTGCTAATACTTCATCCAACTA-----TTGAAACATATCCTAGAGGCAATAATATTGTATT
ATTATATTTCTCCATTCATAATTAAGAGTTTATATTCTATTTTATAATTGTTATGATCCTGAATATGCGA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS---S----------------------S---S-------------------S-----------------
------S------------------------------S------------------------------------------
-----------------------------------S-----------------------------------------S-S
-------------S------------------------------------------------------------------
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--------S-----------------------S-----------------------------------------------
---S-----------------------S----------------------------------------------------
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------------------------------------------S-------------------------------------
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---------------------S-----------------------------------------------------S----
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-------------S-----------------------------------------------------------S------
-------------------------------------------------------S------------------------
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-----------------------------------------------------SS-------------------------
------------------------S------------------------------S------------------------
-----S----------------------------------------------------------------------S-S-
S----------------------------------------------SS-S-----------------------------
----------------------------------------------------------------S---------------
------------S-------------------------------------------------------------------
----------S------------------S--------------S-------S------S-----S--------------
---S---------------------S-----S---------------S----------------------
>forward_103
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---CTCGAACACCTGTCCACCAA---------------------------------------------------------
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>reverse_1054
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-------------GGTCTGAACCTCAACGTGGT-----------------------------------------------
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>forward_715
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-------------------------------------------------------AACGGAACCGACTCGTTGTT-----
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>reverse_2174
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-------------ATCTGCAAGTGTTGGGAGCT-----------------------------------------------
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