>input_sequence_59622
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--------------------------------------------------------ATGGCCCAGGTACGCCAGTTTGAG
AGTGTCTTCTCCCTCGATTCCTTCAGTTTTAGCATGTTAAGTCGATCATG-----GCGTCAGTGAAATCCATGAGTATTG
GGAGCGAGAACATACTCCTGGGGAAATGTTTGTTCACTGCTCGCTTCCTTGATTGTGCTGCATGTAGAAGGTGGTGCTGA
GGATTCCCACCATGACCGACGAGAAGACCAAGCAGAAAGCCATGGAGGCCGTCGCCGACATCTACGGTACGTAAGCGCAC
CCCATGAATTTTCCTCCCGTTGCTGCTTCGATTGATCT----------TTTGAATCTCACAAAGGAAGGGGGCAGAAAAA
TCTCCTCCCATGCTTCCCGGCTCCCGGCCATTCATCGTCAGTTCATCTTTCCATCTTGTGGTAT--TTCTG---------
--------------------GAACCATAGCTGAATTTCGCAAGGATGCATGAATTATTGCTAGGCGATAATGCGATATTC
GATCGCGATGCCTGATCAGACGTGGCTGGGCAGGTAAGTCAATCTGTAGGGCCATAAGCTACATGCATGCCTGTACCATA
GTACGAAAATGGCTTTACTCTTGTGTTTGTTTGATGAGCCAAGTTGGTAGAACTACACATGGGTCCTTTCCTCCTCTGTC
C--------------TTCGTATACTGTGAGTGGGTGGGCATGACCCGAGATCTCTTCGGTCAGATCCTCGCACAAAAGGT
CAAAATCCTCACACTATAATATGCTTGTAATCATAGCGCAGATTCAAATCAATAAATGGATTCTAAAAAAAAGAGGTG--
TAATCAATCAATGAACATGATTTCTATAGCTTAATCAATGAGCATAT-----------ATAGTTTTGTTGCATCTAATCA
TAGTG-----CAGATACAACCAATCAACCAGCATGAATGAACTCATTCCTTTTAATTTTT----CTACTCGTGGTTGGTT
GAAGGTATCGACTCGATAGCCGCGGACCTCAAGGACAACAAGATGACCGTCATCGGCGCCATGGACACCGTAGCCATCGC
CAAGAGGCTCAAGAAGCTCGGCAAGATCGACATCGTCTCGGTCGGCCCGGCCAAGGAGGAGAAGAA------GCCGGCAC
CGGCTGCGGAGAAGAAGGGCGAGGAGAAGAAGGATGACAAGAAAGAGGAGAAGAAAGACGACAAGAAGGCCGACAAGAAG
TGA-----------------------------------------------------------------------------
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>chr4B_1_TraesCS4B01G393600
CAGTCAGGGATGTGAGAAGGTGGTTGTCGAAACTCATAACGTGACTATGGTTGATGCATTGAATGGAAACGAGGATTACT
CGTTGGTGGGCTGCACCGATCCTCAATGAATGTCGAAGTCTACTTGCGAATTTCGGGAAGGTCTTTATTGAACATTGTAT
AGTCGAACATGGTTGCCCATGAGCTAGCTAGTTTTGGGAGGTCTAATCCACCGATGTTGTGATCGGATACACATCCAGGT
TTTATTTTATCTTAATGAGTAGACGATGTAGGTGTGATTTAAGTTAATAAAAGCTAGCCATGAAGGCATTCGTATAAAAA
AAAATCAACTGTGGCAAGATGTGATATGTGAGCCGCGTATATTGACTCCACCGGGTAACATAATGATGAGACGAGTTTCT
TTTTTTTTGAAAAAGGAGGAATACCCCGGCCTCGGCATCGCAATGATGCATGCAACCATATTATTAAAGTCCCCATCGTG
TATACGACGTGACGAGTTAAGGTTAAATTCATTTTGCGAAACCGACGTGTCTGTCATGTGGTACAAGATACAAATCAAGA
CAGAATTGTAGGCCTACCACCATGTGGTAATAAACCGACGTGTTTGTCATACCACCAGAAAGAGAACAGAAGCATATAAC
CATGCTCCTGTATGTAATCCAGCTCGGATAGTTCCTGAACTGGAGGGTGTCCGGCCGTGTGGGAAACACCTTGTATATGC
GGGCGGCTTTGGGTTTGGGTTTTGTTGGATGTGCTGCAGATCGTTCGGCGTTCCACACGAAGTTGACACTTCACCCGATC
ACCA-TCAGGTCCGAACATTCTAGT--ATAAGAAGAGCCTCCCCCATGGACATGGAGAACATCGTCATCACACGCACACA
CACACACACACACACACACACACACACACACACACACACACACACACACTCTTCACAAGTTCCCACTGTTTCCTGTCCCT
CTTGAGTTGAGTCTCT---------CCCGGCCGGCCTTTCCCCTCCTGCCAG----ATGGCCCAGGTACGCCAGTTTGAG
AGTGTCTTCTCCCTCGATTCCTTCAGTTTTAGCATGTTAAGTCGATCATG-----GCGTCAGTGAAATCCATGAGTATTG
GGAGCGAGAACATACTCCTGGGGAAATGTTTGTTCACTGCTCGCTTCCTTGATTGTGCTGCATGTAGAAGGTGGTGCTGA
GGATTCCCACCATGACCGACGAGAAGACCAAGCAGAAAGCCATGGAGGCCGTCGCCGACATCTACGGTACGTAAGCGCAC
CCCATGAATTTTCCTCCCGTTGCTGCTTCGATTGATCT----------TTTGAATCTCACAAAGGAAGGGGGCAGAAAAA
TCTCCTCCCATGCTTCCCGGCTCCCGGCCATTCATCGTCAGTTCATCTTTCCATCTTGTGGTAT--TTCTG---------
--------------------GAACCATAGCTGAATTTCGCAAGGATGCATGAATTATTGCTAGGCGATAATGCGATATTC
GATCGCGATGCCTGATCAGACGTGGCTGGGCAGGTAAGTCAATCTGTAGGGCCATAAGCTACATGCATGCCTGTACCATA
GTACGAAAATGGCTTTACTCTTGTGTTTGTTTGATGAGCCAAGTTGGTAGAACTACACATGGGTCCTTTCCTCCTCTGTC
C--------------TTCGTATACTGTGAGTGGGTGGGCATGACCCGAGATCTCTTCGGTCAGATCCTCGCACAAAAGGT
CAAAATCCTCACACTATAATATGCTTGTAATCATAGCGCAGATTCAAATCAATAAATGGATTCTAAAAAAAAGAGGTG--
TAATCAATCAATGAACATGATTTCTATAGCTTAATCAATGAGCATAT-----------ATAGTTTTGTTGCATCTAATCA
TAGTG-----CAGATACAACCAATCAACCAGCATGAATGAACTCATTCCTTTTAATTTTT----CTACTCGTGGTTGGTT
GAAGGTATCGACTCGATAGCCGCGGACCTCAAGGACAACAAGATGACCGTCATCGGCGCCATGGACACCGTAGCCATCGC
CAAGAGGCTCAAGAAGCTCGGCAAGATCGACATCGTCTCGGTCGGCCCGGCCAAGGAGGAGAAGAA------GCCGGCAC
CGGCTGCGGAGAAGAAGGGCGAGGAGAAGAAGGATGACAAGAAAGAGGAGAAGAAAGACGACAAGAAGGCCGACAAGAAG
TGAAAGCAACCCATTGCAGAAGGAGGTAGAAGGAGAAACACAACACCACCACGCAAACGGCAGCAACAACAAAAAGTCTT
TGACATCTGAGGCTCTGATGGAGTGCTAGATAGCTAATTATAATCTCCTCTGCGAAATGAGATCACTTTGTACTGTACCG
GTATATATAGTGCACTAGAGACATCATGTCAAATCAAATAT-----------------------GACCCTGGGTTTGCCT
GATTGGTGATGACATGGAACCTACTCGATCAGCCAACTTCAGGCAATTTTTCAGAATTCA-------------GATATCA
GTTTTTTAGGTGTGTGAACCTGAGCTGGCCTGTGACAGAGACTGGTTATCTGCCACCTTCG-------------------
------GTCGTTGCAATGGCGCAAAAAAAAAAAAATGGAAGCAGTGTCAGTGTGGCCTTTCCCCTAACTCCAAGTTGCCG
CAGGCCCAAGTATATCCCGCTTTGCTCACAGTCTTTGATCTATCACGATTACTACTCCTCGAGGTCTCAAGGGGAAAAAA
GAGAGGAGCCGTTGGCTTTGGGTAAGGAAATTTTTGCTGACTTTAATTTTGTTTGTACGAACTCTGAAATATGTTCATAA
ATACTAAATAAAGTATTACACGAATGAAAAGTATTCCATAGAATCACAATAAAAATGACTTCTACATATTTTTTTCAATA
TACTTGAAAGTGCTCATATATTTCAAAACAAATGTCCATGAGTATAAAAAACAAGTTAATGTATTAACTGTTCAAGAATT
GTTTTGTAAAAATAAGACAATAAAAAATTCAAACGGATTTTTTTTTTGGCAAATGGTGGATTTTCTTAACTCAAATGAAG
CACCAAGCAGATACAAAGCATAATGAGCACACACCCGGCCTCAGCATAACTAGGAGTACGCCGCCAATATCAATGCACAC
ACAAGAAAACCACACCGACAAAAAGCAAAGTCATACAAGACCAAAGTTATGCGTAAGCCAATAAAAAGGGAAAAACCTTG
GGGCGATCGTCAAACTACAACAAT
>chrUn_649
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--------TGTATGTAATCCAGCTTGGATAGTTCCTGAACTGGAGGGTGTCCGGCCGTGTGG-AAACACCTTATCTAGGC
GGGCGGCTTTGGGTTTTGGC--------ATGTGCGCCAGATCGTTCGGCGTTTTAGACGAAGTTGACACTTCACCCGATC
ATCA-TCAGGTCCGAACTATA---------AGAACCGTTTCCTCCATGGCCATGGAGAACATCGTCATCACAC-------
---------------ACACACACACACACACACACACACACACACACACTCTTCACAAGTTCCCACTATTTCCTGTCCCT
CTTGAGTTGAGTCTCT---------CCCGGCCGGCCTTTCCCCTCCTGCCTG----ATGGCCCAGGTA----AGTTTGAG
AGTGT-TTCACCATCGATTCGTTCAGTTTTTAGCATGTCAGTCGATCCTG-----CCGTCGGTGAAATCCAAGAGTATTG
GGAGCGAGACCATACTCTTGGGGAAATGTTTGTTCACTGCT----TCCTTGATTGTGCTGCTTACAGAAGGTGGTGCTGA
GGATTCCCACCATGACCGACGACAAGACCAAGCAGAAAGCCATGGAGGCCGTCGCCGACATCTACGGTACGTAAGCGCAC
CCCATGAATCTTCCTGCCGTTGCTTCTTCATTTGATCTCGCTTGGCGGTTTGAATCTCACAAAGGAAGCGGGCAGAAAAA
TCTCCTCCCATGCTTCCCGGCTCCCGGCCGTTCATCGTCAGTTCATCTTTTCATCTTGTGGCAT--TTCTGGAACCACAG
CTTTCTACAGGTCCACCAATGAACCATAGCTGAATTTCGTAAGGATGCATGAATTATTGCTAGGCGATAATGCGATATTC
GATCGCGACGCCTCATCAGACGTGGCCGGCCAAGTAAGTCAGTCTGTAGGGCCATAAGCTACATGCATGCCTGTACGATA
GTACGAAAATGGCTTTACTCTTGTGTTTGTTTGATGAGCCAAGTTGGTAGAACTACACATGGGTCCTTTCCTCCTCCGTC
C--------------TACG-----TGTGAGTGAGTGGACATGACTCGATATGGCGTCGGTCGGATCCTCGCACAAAAGAT
CAAAATCCTCACACTATAATATGCTTGTAATCATAGTGCAGATGCAAATTAATAAATGGCTTCTAAAAGAAATAGAGATT
TAATCAATCAATCAACATGATTTCTATTGCTTAATTTTTTATTGCTTAATCAATGGGCATAGTTTTGTTGCATCTAATCA
TAGTCCAGAACAGATGCAAGCAATCAACCAGCATGAAAGAACTCATTCCTTCTTTCTTTTTTTCCTACTCGTGGTTGGTT
GCAGGTATCGACTCGATAGCCGCAGACCTCAAGGACAACAAGATGACCGTCATCGGTGCTATGGACACGGTGGCCATCGC
CAAGAGGCTCAAGAAGCTCGGCAAGATCGACATCGTCTCGGTCGGGCCGGCAAAGGAGGAGAAGAA------GCCGGCGC
CGGCTGCGGAGAAGAAGGGCGAGGTTAAGAAGGATGACAAGAAAGAGGAGAAGAAAGACGACAAGA------------AG
TGAAAGCAACCCATTGCAGAAGGAG----------AAGCCCAACATCACCACGCAAACGGCAACAGCAACAAAAAGTCTT
TGACATCTGAGGCTCTGATGGAGTGCTAGACAGCTAATTATAATCTCCACTGGGAAATGAGATCGCTTTGCGTACTGTAC
TGG--TATAGTGCACTACAGACATCAAGTCAAATCAAATATCAGATCAGTGTGTGTGTACATGTGACTCTGGGTTCGCCT
GATTGGTGATGACATGAATCCTACTCTATCAGCCAACTTCAGGCAATTTTT---------GACTACATTGCATGATCTCA
GTTTTTTAGCTGTTTGAACCTGAGCTGGCCTGTGACAGAGACTGGTTATCTGCCACCTTCTGATGGGAAAGAGGCCAAGA
GTTTCAGTCGTTGCAATGGCGCGG-C--AAAAAAAAGGAAGCAGTGTCAGTGTGGCCTTACCCCTAACTCCAAGTTGCCG
CAGGCCCAAGTATATCCCGCTTTGCTCACAGTCTTTGATCTGTCACCATTACTACTCCTCGAGGT---------------
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>chr5A_777
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--------------------------------------------------------ACGAAGTTGACACTTCACCCGATC
ACCAATCAGGTCCGAACTATATATAAGATAAGAAGAGCCTCCCCCATTGCCA---------TCGTCATCACAC-------
---------------ACACACACACACACACACACACACACAC------TCTTCACAAGTTCTCACTGTTTCCTGTCCCT
CTTGAGTTGAGTCTCTCTGCTCCATCCCGGCCGGCCTTTCCCCTCCTGACAGCCAGATGGCCCAGGTACGCCAGTTTTAG
AGTGTTTTCTCCCTCGATCCGTTCAGATTATAGCATGCCGACCGATCGTGTCGTCGCGTCGGTGAATCCTGCTAAGTTTC
TTAGTAGAA------TCCTGGGGAAATGTTTGTTCACTCTT----TGCTTGGTTGCCGCTCG--CAGAAGGTGGTGCTGA
GGATTCCCACCATGACCGATGACAAGACCAAGCAGAAAGCCATGGAGGCCGTCGCCGACATCTACGGTAAGTTTGTGCCC
CCCATGAATC---CTTCCGTTGCTGGTTTGTTTGATATCGCTTGGCGGTTTGATTCTCACAA-GGAAGCGGGCAGAAAAA
TCTGCTCTCGTGCTTCCCGGCTCCTGGCCGTTGATAGTCAGTTCGTCTTTTCATCGTGTAGTATATTTTTGGAAACACGG
CCTTCTACACTTCTACCAATAAACCGTAGCTGAATTTCGCAAGGACGCATGAATTATTGCTGGGCGATAATGCGATATTC
GATCGCGACGTGTGATCAGACGTGGCCGGCCAAGTAAGTCAATCTGTAGGGCCATAAGCTACATGCATGCATGTACGATA
GTACGAAAATGGCTTTACTCTTGTGTTTGTTTGATGAGCCAACTTGGTAGAACTACACATGGGTCCTTTCCTCCTCCTCT
CCTCCGTCCTACGTATACG-----TGTGAGTGAGTGGGCATGACTAGATATGTCGTCGGTCAGATCCTCGCACAAAAGAT
CAAAATCCTCACACTATAATATGCTTGTAATCATAGTGCAGATCCAAATCAATAAATGGATTCT-AAAGAAAGAGAGATT
TAATCAATTAATGAACATGAATTCTATTGCTTAATCAATGAAG---------------ATAGTTTTGTTGCATCTAATCA
TAGTCCG-----GATGCAACCAATCAACCATCATGAATGAACTCATTCCTTTTC---TTT----CTACTTGTGCTCGGTT
GCAGGTATCGACTCGATAGCCGCGGACCTCAAGGACAACAAGATGACCGTCATAGGCGCCATGGACACGGTGGCCATCGC
CAAGAGGCTCAAGAAGCTCGGCAAGATCGACATCGTCTCGGTTGGCCCGGCCAAGGAGGAGAAGAAGCCGGCGCCGGCGC
CGGCTGCTGAGAAGAAGGGCGAGGAGAAGAAGGAAGACAAGAAAGAGGAGAAGAAAGATGACAAGAAGGTCGACAAGAAG
TGAAAGCAACCCATTGCAGAAGGAG----------AAACCCAACATCATCACGCAAACGGCAACAGCAACAAAAAGTCTT
TGACATCTGAGGCTCTGATGGAATGCTAGATAGCTAATTATCATCTCCACTGCGAAACAAGGTCGCTTTGCGTACTGTAC
TGG--TATAGCGCACTACAGACATCAAGTCAAATCAAATATCAGATCAGTGTGTGTGGACATGTGACTCTGGGTTTGCCT
GATTGGTGATGACATGAATCCTACTCTATCAGCCAACTTCAGGCAATTTTTCAGAATTCAGACTACATTGCATGATCTCA
GTTTTTTAGCTGTTTGAACCTGAGCTGGCCTGTGACAGAGACTGGCTATCTGCCACCTTCTGATAGGAAAGAGGACAAGA
GTTTCAGTCGTCGCAATGGCGCGGCC--AAAAAAAAGGAAGCAGTGTCAGTGTGGCCTTTCCCCTAACTCCAAGTTGCCG
CAGGCCCAAGTATATCCGGCTTTGCTCACAGTCTTTGATCTGTCACCATTACT---------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS----------------S-------------------------------------S---------S-S--S--
----------------S--SSSSSSSSS------SS----------------SS-S------------------------
-----------------SS-S--SS------------------------S-----------------------SSSSSSS
SSSSSSSSSSSSSSS-----------------------------------------------------------------
--------------------------------------------------------------------------------
-----S--------------S---------SSSSSSS-S--------S------------S----------S--------
---------S-------------------------------SSSS----------------S-SS---------------
----------------------S---------------------------------------------------------
---------S-----S--------------S-------------------------------------S-----------
-----------------------------S--------------------S-----------------------------
--------------------------------------------------------------------------------
--------S-----------------S--S--S-------------------------------------------S---
----------------------------------------------------------------------------S---
----------------S--SSSSS--------S-----------S---S--S--S-----------------------S-
------------------------------------S------S------------------------S------SSS--
---------------------------S-------------SSSSS----------------------------------
----S----------S-------------------------------------SSS------------------------
-S------------------------------------------------------------------S--S--------
------------------------------------------------------------------------------S-
---------------------------------------------------------------------S----------
-------------------------SSSSSSSSSS----S-----S----------------S--S--------------
------------------------------------------------S---------------S-----SSSSS-SSSS
SSSSS------------S--------S----------------------------------------S------------
----------------S-S-------S-------------------------------------------------S---
---------S---S----------------------------------------------S-------------------
----------------------SSSSSS-------S--------------------------------------------
-----------------------------------------S----S------------------SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS
>forward_531
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-------------------------------TTTTGCGAAACCGACGTGTC-----------------------------
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>reverse_1732
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---------------------------------------------------CTCTTCGGTCAGATCCTCGC---------
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>forward_883
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---------------------------------------------------------------GTCATCACACGCACACA
CAC-----------------------------------------------------------------------------
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>reverse_2676
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-----------------------------------TGGAAGCAGTGTCAGTGTGG-------------------------
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