>input_sequence_59613
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-----------------------------------------------ATGTCTTTGGAGGTTCACGATAGCGAGGTTGAC
ATTGTGATTGCAGCACTACAGCCCAACCTGACCTCTTTCTTTCAGGCGTGGCAGCCATTTTTCTCCCGGTTTGACATCAT
TGTTGTCAAAGATCCAGAGTTGGCAGCAGATCTTCAGATCCCTTCAGGTTTTAATGTGAAGGTTTACACAAAGTCTGACA
TTGATGGACTGCTTGGTGCCACAACCATCAACTTCTCTGGCCATTCATGCCGTTACTTTGGGTACCTTGTCTCACGCAAG
AAGTATGTCATCTCAATTGACGACAACTGCCTCCCAGCAAAGGACCCTGCTGGGATGACTGTGGATGCTGTTACACAGCA
CATGATCAATTTGAAGACACCTGCCACACCTTTCTTCTTCAACACACTGTATGACCCATACCGCAAGGGTGCTGACTTTG
TCCGTGGATACCCATTCAGCCTGCGTGAGGGGGTTGAATGCATGCTCTCATGTGGTCTCTGGCTGCACAATGCGGACTAT
GACCCAATGACACATGTCGTGAAGCGGAACCAACGCAACACAAACTATGTGGATGCTGTGATGACAGTTCCACTCGGTGC
GATGTTCCCTGTGAGCGGGATAAATGTTGCATTCAACCGTGAGGTTCTGGGGCCCGTGATGTTCCCTGGCCTGCGGATTC
GCAAGGAAGGGAAGCACAGGTGGGACACCCTTGAAGACATATGGAATGGCCTGTGTGCCAAGGTGGTCTGCGACAGCCTG
GGTTACGGCGTGAAGACCGGTCTGCCTTATGTGATGAGAAGTGATGCAGAGGCAGGCAAGGCCTTGGAGAGCCTCAAAGA
GTGGGAAGGGGTGAAAGTGATGGATGATGTCCTTCCCTTCTTTGAGTCGCTCAAGCTATCAAGGACCGCAGTTACTGTCG
ATGACTGCGTTAAGGAGCTAGCTGGCATTGTGAAGCAGAAGCTGGCGCCAAAGAATGCAATCTTCGCCAAAGCTGCCGAT
GTCATGGAGGAATGGACCAAGCTCTGGAAATCTCATGGAGCTCAGAACGCGTAATACTGGACTGCGTCCATTTTATCCAT
CAAGATACTTATTTTTCTTCTTCTTGGACTTTAAAATTTCCATATGCACTGTTATGATGCAGCTGA--------------
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>chr2D_1_TraesCS2D01G498900
TCCGCGTACGTGCCCCCTCCTCCCCTCCCCCTCGGATCCCTAATCCGTCGGTTAATCGCTCACCGCTGATCACTCATCAC
TGTGTCTGTGTGTGGCTTACCCCGGTCTTGCTTTGGGGGTGATTAATTAGTTTCTTCCGGCCAGTCCTAGTCTGACCCCG
TGTTGGATTGGAGGATCTGTTGTCTGAGTGAGTGATCGATTCGGGCCGCCTCCTCTCTGCTGGGGACTAGTAGATGGAAT
GTGTCCTCTCGACCTAAACATAGGGACAGTAGATTGCATGATTGGTCTGAAAACCATGTGTTTTCTTATGGCCAATTCAA
TTTAGTGGTTGATAATAAGTTAGGTCCTGCGAGCTGTGATGTCACGAGAGAGCTGTTGATGCCGTATGTATGTGTGCCCC
ATTTGTCCTGTTTAGAATCTGGTTTTGACGCCGTGAGCATTCCAACAGGCATATTAGGCTAGATATGAGCTTCAGTTTGA
TGCTTGGATATTAGGGGTATCTGATGATAGTCTTATTTATCTTGTTTGAAGTCTGTTTTGATGCCCTCGCAAACAAAAAA
AGTCTGTTGATGGTGCAGTTTCTGGGG----GGTTCAGTTTCAGCATGAACTGTAACAGTCATCACCTGCACTCTTGTAG
TCTTTCTTACTTTTCGTGTTGTTA---GATCTCTGATGACTGACGAGTGACGATTGTTTGATGGCAGAGAACACTTAGTG
CTGGTAAGCTGACAGAGAGAGTCCTCAAGTTGTTTCTGGCAACCGACTGCGAGGAGATCATCTTGCTTGTTCAGCTCCTC
AACATTAAGCAGCCACTTATACCGGTCCTTCCTACGAGTATGGCACTTATCTGTTTATCCTCTGCTGGTTCTAATGTTAA
TGTTATGCCAGAAGGATGCTGGCTTATTTGACTCAATATCCTCTTGTTTGTTTGTTTGTTTGTTTGTAGGGTGCTCTGAG
AAGTTCTAGTACTGCTGCTGCTTAGATCAGGCTGATTAGCTGTGAAGATGTCTTTGGAGGTTCACGATAGCGAGGTTGAC
ATTGTGATTGCAGCACTACAGCCCAACCTGACCTCTTTCTTTCAGGCGTGGCAGCCATTTTTCTCCCGGTTTGACATCAT
TGTTGTCAAAGATCCAGAGTTGGCAGCAGATCTTCAGATCCCTTCAGGTTTTAATGTGAAGGTTTACACAAAGTCTGACA
TTGATGGACTGCTTGGTGCCACAACCATCAACTTCTCTGGCCATTCATGCCGTTACTTTGGGTACCTTGTCTCACGCAAG
AAGTATGTCATCTCAATTGACGACAACTGCCTCCCAGCAAAGGACCCTGCTGGGATGACTGTGGATGCTGTTACACAGCA
CATGATCAATTTGAAGACACCTGCCACACCTTTCTTCTTCAACACACTGTATGACCCATACCGCAAGGGTGCTGACTTTG
TCCGTGGATACCCATTCAGCCTGCGTGAGGGGGTTGAATGCATGCTCTCATGTGGTCTCTGGCTGCACAATGCGGACTAT
GACCCAATGACACATGTCGTGAAGCGGAACCAACGCAACACAAACTATGTGGATGCTGTGATGACAGTTCCACTCGGTGC
GATGTTCCCTGTGAGCGGGATAAATGTTGCATTCAACCGTGAGGTTCTGGGGCCCGTGATGTTCCCTGGCCTGCGGATTC
GCAAGGAAGGGAAGCACAGGTGGGACACCCTTGAAGACATATGGAATGGCCTGTGTGCCAAGGTGGTCTGCGACAGCCTG
GGTTACGGCGTGAAGACCGGTCTGCCTTATGTGATGAGAAGTGATGCAGAGGCAGGCAAGGCCTTGGAGAGCCTCAAAGA
GTGGGAAGGGGTGAAAGTGATGGATGATGTCCTTCCCTTCTTTGAGTCGCTCAAGCTATCAAGGACCGCAGTTACTGTCG
ATGACTGCGTTAAGGAGCTAGCTGGCATTGTGAAGCAGAAGCTGGCGCCAAAGAATGCAATCTTCGCCAAAGCTGCCGAT
GTCATGGAGGAATGGACCAAGCTCTGGAAATCTCATGGAGCTCAGAACGCGTAATACTGGACTGCGTCCATTTTATCCAT
CAAGATACTTATTTTTCTTCTTCTTGGACTTTAAAATTTCCATATGCACTGTTATGATGCAGCTGAATAAACAATGTTTC
CGTGTGAGGGGAATTTGTGATGTAGAACATGTAGTTGCCAGGTGTTCGGTTTGTGTATGCTCAAGAACCGTGTATACCAA
ATCAAAAAGACTTGCATGATTTACAAGGAAGTGTTGTGTTGCACCCTCCTCTGTATTCTTGTCCAGATGCATTTCATCCA
TGTTTCTTTCCTCTGAAAAGTGTTTCTGAAACAAAGTTCCTCATGCAAAATGTAGTCATTTGGTACACGGTGCCCTCACT
TTTCGAAGAGGCACTGCAAAGTTCCTCGTGCAAAATGTTCCATCATAAGGCTTTCCATCTATAGATTGAGCCATTACCCA
CCAATGATCCTATTTGTTTAGAACTCAGTCGTCTGCTTATATAGATAAGTCGGAACGTCCTTAGTTCAGCATTATAGCAC
ATAGTCTCCGACGCTACTACAGCGCTTTGCTAACTCGAAGCGCTCGCTATGAGAATGACGCGTTGCTAACGCTCGGCTAA
GTCGTCGAACCCTCGCGCTGACCATTCACTTTCTCAGTAGTGAAAGCGCTTCTCTTTGCCCTTTAACTTCATAAAGTATT
TGGAAAGAAAAGAAAGAGATTCTTGGTTAACCGGCCACTCCAGAACACGCCCTTTCAGAAATGTGGGTGAAATGCTCGAC
TTCTATTATTGTTGTAAAATGATTTTTTTCTTTATGCTGCTACGAGGGGCAAAAGCCATCTTGAACAATTTTCATTTTAA
AACCAAGATTGATATACAAACACAACGGCTACAACGAGAAGTAGCACCCAACACACATAAAAAGGAACAAGGAACAACAG
AAGGAGAACCAAAAGCAACCTACGACAAGCAGCCAACACCAAGAACTTAGCACCCATCATTAGTGGGTACACCGAGAAAG
AGCGGGGACTAGCATTGTTGGATCAGACGAAAGGAGATTCGACACCAAGAAGACGTTGAGAAGAAGTTGCCTGCTGCCCT
ACGATCACTGAGCACCTTGAAGAACT
>chr2B_559
AAAGTCTGTC----------------------------------------------------------------------
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------TTGAGGATGCAATTTCTGGCTGGCAGGTTCAGTTTGAGCATTAACTGAAACAGTCATCACCTGCAATCTT-GTA
G---TCTTACTTTTTTTGTTGTTA---GATCTCTCATGACTGACGAGTGACGATTGTTTGATGGCAGAGAACCCTTAGTG
CTGGTAAGCTGACAGAGAGAGTCCTCAAGTTGTTTCTGGCAACCGATTGTGAGGAGATCATCTTGCTTGTTCAGCTCCTC
AACATTAAGCAGCCACTCATACCGGTGCTTCCCACGAGTATGCCACTTATCCGTTTACTCTCTGCCGGTTCGAATGTTGA
TGTTATGTCATAAGGATGCTGGCTTATTTGACTTAATATCCTCTTGTTTGTTTGCTTGTTTGTTTGTAGGGTGCTCTGAG
AAGTTCTAGTACTGCTGCTGCTTAGATCAGGCTGATTAGCTGCGAAGATGTCTCTGGAAGTTCATGATAGCGAGGTTGAC
ATTGTGATTGCAGCACTCCAGCCCAACCTGACCTCTTTCTTTCAGGCGTGGCAGCCATTTTTCTCCCGGTTTGACATCAT
CGTTGTCAAAGATCCAGAGTTGGCAGCAGATCTTCAGATCCCTTCAGGTTTTAATGTGAAGGTTTACACAAAGTCTGACA
TTGATGGACTGCTTGGTGCCACATCCATCAACTTCTCTGGCCACTCATGCCGTTACTTTGGGTACCTTGTCTCACGCAAG
AAATATGTCATCTCAATTGACGACAACTGCCTCCCAGCAAAGGACCCTGCTGGGATGACTGTTGATGCTGTCACGCAGCA
CATGATCAATTTGAAGACACCTGCTACTCCTTTCTTCTTCAACACACTGTATGACCCATACCGCAAGGGTGCTGACTTTG
TCCGTGGATACCCATTCAGCCTGCGTGAGGGGGTTGAATGCATGCTCTCATGTGGGCTCTGGCTGCACAATGCGGACTAT
GACCCAATGACACATGTCGTGAAGCGGAACCAACGCAACACGAACTACGTGGATGCTGTGATGACAGTTCCACTCGGTGC
GATGTTCCCTGTGAGCGGTATAAATGTTGCATTCAACCGTGAGGTTATGGGGCCCGTGATGTTCCCTGGTCTGCGGATTC
GCAAGGAAGGGAAGCACAGATGGGACACCCTTGAAGACATATGGAATGGCCTGTGTGCTAAGGTGGTCTGCGACAGCTTG
GGCTATGGCGTGAAGACCGGACTGCCTTATGTGATGAGAAGTGATGCAGAGGCAGGCAAGGCCTTGGAGAGCCTCAAAGA
GTGGGAAGGGGTGAAAGTTATGGACGATGTCCTTCCCTTCTTCGAGTCGCTCAAGCTATCAAGGACCGCAGTTACTGTCG
ATGACTGCGTTAAGGAGCTAGCTGGCATTGTGAGGCAGAAGCTGGCGCCAAAGAATGCAATCTTCTCCAAAGCTGCCGAT
GCCATGGAGGAATGGACCAAGCTCTGGAAATCTCATGGAGCTCAGAACGCGTAATACTGGACTGCGTCCATTTTATCCAT
CAAGATACTTATTTTTCTTCTTCTTGGACTTTAAAATTTCCATATGCACTGTTATGATGCAGCTGAATAAACAATGTTTC
CGTGTGAGGGGAATTTGTGGTGTAGAACATGTAGTTGCCAGGTGTTCGGTTTGTGTATGCTCAAGAACCGTGTATACCAA
ATCAAAATGATTT-------------------------------------------------------------------
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>chr2A_559
AAAGTCTGTC----------------------------------------------------------------------
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------TTGAGGGTGCAAGTTCTGGCTGGCAGGTTCAGTTTGAGCATCAACTGAAACAGCCATCACCTGCACTCTTGGTA
G---TCTTACTTTTTGTGTTGTTATTAGATCTCTCGTGACTGACGAGTGACGGTTGTTTGATGGCAGAGAACCCTTAGTG
CTGGTAAGCTGACAGAGAGAGTCCTCAAATTGTTTCTGGCAACCGACTGCGAGGAGATCATCTTGCTTGTTCAGCTCCTC
AACATTAAGCAGCCACTTCTACCGGTCCTTCCCACGAGTATGCCACTTATCTGTTTATCCTCTGCCGGTTCGAATGTTAA
TGTTATGTCATAAGGATGCTGGCTTATTTGACTTAATATCCTCTTGTTTGTTTG--------TTTGTAGGGTGCTCTGAG
AAGTTCTAGTACTGCTGCTGCTTAGATCAGGCTGATTAGCTGTGAAGATGTCTTTGGAAGTTCATGATAGCGAGGTTGAC
ATTGTGATTGCAGCACTCCAGCCCAACCTGACCTCTTTCTTTCAGGCGTGGCAGCCATTTTTCTCCCGGTTTGACATCAT
TGTTGTCAAAGACCCAGAGTTGACAGCAGATCTTCAGATCCCTTCAGGTTTTAATGTGAAGGTTTACACAAAGTCTGACA
TTGATGGACTGCTTGGTGCCACATCCATCAACTTCTCTGGCCACTCATGCCGTTACTTTGGATACCTTGTTTCACGCAAG
AAGTATGTCATCTCGATTGATGACAACTGCCTCCCAGCAAAGGACCCTGCCGGGATGACTGTTGATGCTGTTACACAGCA
CATGATCAATTTGAAGACACCAGCTACTCCTTTCTTCTTCAACACACTGTATGACCCATACCGCAAGGGTGCTGACTTTG
TCCGTGGATACCCATTCAGCCTGCGTGAGGGGGTTGAATGCATGCTCTCATGTGGGCTCTGGCTGCACAATGCGGACTAC
GACCCAATGACGCATGTGGTGAAGCGGAACCAGCGCAACACGAACTATGTGGATGCTGTGATGACAGTTCCGCTCGGTGC
GATGTTCCCTGTCAGCGGGATAAATGTTGCATTCAACCGTGAGGTTCTGGGGCCTGTGATGTTCCCTGGCCTGCGGATCC
GCAAGGAAGGGAAGCACAGATGGGACACCCTTGAAGACATATGGAATGGCCTGTGTGCTAAGGTGGTCTGCGACAGCTTG
GGCTACGGCGTGAAGACTGGACTGCCTTACGTGATGAGAAGTGATGCAGAGGCAGGCAAGGCCTTGGAGAGCCTCAAAGA
GTGGGAAGGGGTGAAAGTGATGGACGATGTCCTTCCCTTCTTCGAGTCGCTCAAGCTCTCGAGGACCGCAGTTACTGTCG
ATGACTGCATTAAGGAGCTAGCTGGCGTTGTGAGGCAGAAGCTGGCGCCAAAGAATGCAATCTTCGCCAAAGCTGCCGAT
GCCATGGAGGAATGGACCAAGCTCTGGAAATCTCATGGAGCTCAGAACGCGTAATACTGGACTGCGTCCATTTTATCCAT
CAAGATACTTATGTTTCTTCTTCTTGGACTTCAAAATTTCCATATGCACTGTTATGATGCAGCTGAATAAACAATGTTTC
CGTGTGAGGGGAATTTGTGATGTAGAACATGTAGTTGCCAGGTTTTCGGTTTGTGTATGCTCAAGAACCGTATATACCAA
ATCAAAATGA----------------------------------------------------------------------
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>SNPs
SSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS----S------S-------SS--------------S-----S-----S-----------------------SSS
SSSS----------S-------------------S-------------------------------------S-------
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--------------------------------S---------S----------------------S-----S--------
-------S--S----------------------S--------------------S-------------------------
----------------------------------------------------------S-----S---------------
-----------------S--------------------------------------------------------------
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-----------------------S-------------------S------------------------------------
--------------------------------------------------------------S-----------------
------------------------S--S----------------------------------------------------
-------------------------------------------------------S------------------------
-----------------------------------------S--------------------------------------
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-------------------S--------------------------------------S------------------S--
--S-----------------S-----------------------------------------------------------
------------------------S-----------------S-------------------------------------
---------------------------------S----------------------------------------------
-S------------------------------------------------------------------------------
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-------S--S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_231
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---------------------------------------------------CCTCTCTGCTGGGGACTAGT---------
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>reverse_1758
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-----------------------------------------------------------------------------CTG
GGTTACGGCGTGAAGAC---------------------------------------------------------------
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>forward_441
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---------------------GTTTTGACGCCGTGAGCATT---------------------------------------
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>reverse_2411
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----------GCACTGCAAAGTTCCTCGTG--------------------------------------------------
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