>input_sequence_59572
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----------------ATGAGCGAGAGCGAGGGCAGCTCGACGGCCTCCGTGATGGACGACGAGGACCTCCTGTGGGAGA
TCCTCCTCCGCCTCCCGCCACAACCGTCTTCCCTCCCGCGCGCCTCCGCGGTCTGCAAGCGATGGCGGCGCATGGCCACA
GACCCCAGCTTCCTCCGCAGCTTCTACACACACCACAAGAAACCGCCCCTCCTAGGCTTCTTTGAGTACCACCGTGACAA
TATTGTGTTCACCTCCATCCTCGATGCTCCTGATCGCATCCCTCGTGAGCGTTTTAACATCGGACGCT------------
------------------GCATCACCTCCTCAGAGAGCTATGTACTTGGCTGCCGCCACGGTCGCGTCCTCGTGATTGAT
CATGTGCGCACAGAGCTCATTGTGTGCACCCCTATCACTGGCGAGCAGCGGCGCTTGGCCGTTCCTCCCGAGTTTAAAAC
AGTCCTCCGTACTTGCATCAACGGGGCGGTTCTCTGCGCTGCTAACGACCAGGGCCATGTGCACGGCGGCTGTCACTCCA
GCCCCTTTAAGGTGGTCTTGGTGATCATGTATAGAGACGA---ACGTCAAGCCCTCGCATGTGTCTACTCCTCGGATACC
AATGCATGGGGCAACCTCATCTCAACAGCTGCCCCATGTCGGCTTTTTAATGCCCATAGACCTGGGTCACTTATTGGTAA
TGCATTCTACTGGTTG---ACTATG---------AGGAATGACATGCTTGTGTTTGATTTGGTAGAGCAAAGTCTAGCTG
TGCTTAGTGGG-CCACCGGTTAAAAATCTTTTCGTCCATAGTCAGGTCATCC------AAGTTGAGGATGGTGTTGTTGG
CTTTGTCGTATTATCTTATCCACAGTTTCAAATATGGCAGAGGAAACTCAATGATCATGGTGTTGCCACATGGGTGGAGT
GGAAGACCATTGGAATGCATAATATTCTTGCCCTCCCTCCTCAGATT---------------GTCAGAGGCGCTGAAACA
ATACTAGGATATTCAGAGGATGCTGATGTGTTTTTTATATATGTGGACGTCAAGTTCTATATGGTTCAGTTTAGGTCAAT
GCAATCCAAGATACTTGATGAAGCATATTATATCACTGACTACCATCCTTTCACAGGGTTTTATTCACCAGGTAACTGTT
CATACTCAGTATTTCTATCGTAG---------------------------------------------------------
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---------------------------------------------------------------
>chr3B_1_TraesCS3B01G076200
GCTTTGCTCATTCCTTCTGGCACTGTATTTCATTGTAATTGTTTTGCTCACTTGTGTGTGAGTAAACAACAGAATGCTTG
GCTTAACTAGACACCGGATTTCCATTGTAAATTTTTCTGGTCTAAATTTATCTTTTCAAATGGTGCGCGACATGGAGCAC
CTCTTTGGGGACGTGCCGTGAGGAATCGTGTATTAGCTTAGATTGCTAGAGTAGGAAGTCCCTATGCTGGCTGTATTTCT
CAAATTCTTTCACCCCTGATCACCATCAACACTTGTTTTCTGCCTTCTATCTGCTAATGAAATGAGTGTCAGCACAAGCT
GGATCTTTCAAAAGAAAAGAAAATGGCGCGCGACTACATATCCTTCAGGCCGACCAGATTCCAAGGGGGCGAAAGTTGCA
TTTTGAACACACTGAGCGCAGACTCCCAGCAAAAAGTGTAAATACTGAG-------------------------------
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------------------TGCAGACCCCATCATAAGACTGCCCGCA----GCGGGGTGCTTCCAATGGGGTGGGGCTCAA
CGTTAAGGGCATGTACAATTATGCTATCTTAGGAGCGGGCATGTAGGATAAATGTTAAGGTAGAGGAAAGAGTAATCATA
ATAAAAGTCTTGTCTTCTCTTATTTCAAAGATGATCTTTTAGCACAATATATGTTTCATCATATTTTTACGAATAACTAA
TTATTGAAGATATGGCTAAGAGATAGCCCATTGTAGCACCATCTTTAAATTACATGCAAAGCGTAAGATAAGAATGTCTT
ATCAATCACTGTACATGCTCTAACAAACCGAGCAGAAAAAAGAAAACAAAAGGCAAACTCTTCCTATCCATCGTCCGATG
GGGAGGATCATTCAGTACGAGTCCACGTTTATTTTGTTTCCTTGGCCAGTTGGATGCAAGAGATCAATCATCGTACGGTA
T--ACATACATATCTCCGATCGGGCCTAAGAAATCCAACATTGCTTTTACGGTACG-GTACGTCTTCGATCTCCGTTCCT
CGTACGTCCCGCCGCCATGAGCGAGAGCGAGGGCAGCTCGACGGCCTCCGTGATGGACGACGAGGACCTCCTGTGGGAGA
TCCTCCTCCGCCTCCCGCCACAACCGTCTTCCCTCCCGCGCGCCTCCGCGGTCTGCAAGCGATGGCGGCGCATGGCCACA
GACCCCAGCTTCCTCCGCAGCTTCTACACACACCACAAGAAACCGCCCCTCCTAGGCTTCTTTGAGTACCACCGTGACAA
TATTGTGTTCACCTCCATCCTCGATGCTCCTGATCGCATCCCTCGTGAGCGTTTTAACATCGGACGCT------------
------------------GCATCACCTCCTCAGAGAGCTATGTACTTGGCTGCCGCCACGGTCGCGTCCTCGTGATTGAT
CATGTGCGCACAGAGCTCATTGTGTGCACCCCTATCACTGGCGAGCAGCGGCGCTTGGCCGTTCCTCCCGAGTTTAAAAC
AGTCCTCCGTACTTGCATCAACGGGGCGGTTCTCTGCGCTGCTAACGACCAGGGCCATGTGCACGGCGGCTGTCACTCCA
GCCCCTTTAAGGTGGTCTTGGTGATCATGTATAGAGACGA---ACGTCAAGCCCTCGCATGTGTCTACTCCTCGGATACC
AATGCATGGGGCAACCTCATCTCAACAGCTGCCCCATGTCGGCTTTTTAATGCCCATAGACCTGGGTCACTTATTGGTAA
TGCATTCTACTGGTTG---ACTATG---------AGGAATGACATGCTTGTGTTTGATTTGGTAGAGCAAAGTCTAGCTG
TGCTTAGTGGG-CCACCGGTTAAAAATCTTTTCGTCCATAGTCAGGTCATCC------AAGTTGAGGATGGTGTTGTTGG
CTTTGTCGTATTATCTTATCCACAGTTTCAAATATGGCAGAGGAAACTCAATGATCATGGTGTTGCCACATGGGTGGAGT
GGAAGACCATTGGAATGCATAATATTCTTGCCCTCCCTCCTCAGATT---------------GTCAGAGGCGCTGAAACA
ATACTAGGATATTCAGAGGATGCTGATGTGTTTTTTATATATGTGGACGTCAAGTTCTATATGGTTCAGTTTAGGTCAAT
GCAATCCAAGATACTTGATGAAGCATATTATATCACTGACTACCATCCTTTCACAGGGTTTTATTCACCAGGTAACTGTT
CATACTCAGTATTTCTATCGTAGTAGTAACCCAATTCAATTATTTTTTCTACATGGCT--CAAACATATATAT-------
-------------TGTGCTTCTTAAGTCACTAACAA-TTAAGCTTAATCAACAATTGTCCCTTTGCGAGGTAGACAGACT
TAAATTATCATTAGTTGTTTTTTACACTACTAGTGTC---AAAAACGCTCTTATATTATGGGATAAAAGGAG--------
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----------------------------------------------------------------------TAGCTGAGTA
AACTGCTTTCAGAACATTCCTTGCATATAGAAG-----AGATGCAGTGCTTTCATTATGAAGTATCTAAGCAAATTGCTT
TCAGAACATTCCATGCATCTAAAATAGATGCAGTTCTTTCATTATGAAGTAT----CTAAGTATATATATACTGCTTTCA
GGAATCTTTTTTGCATTTACAGATGTAGTTTTT-----------------------------------------------
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-----------T------TATGTTGCAAGTTTAAAAGTTGAGCCG-----------------------------------
----------------------------TAATTCATCTATAA-AAA-GTCATTTATTTTTCTCAAGTCACGTTTGTCAGC
TCAACTGTGTAGA---CTTACTCGTGCCTTCCATCATCCATTTGCTTCTTCCTAGGCACTGTCATAAGTTGAAGTTTTAT
GCTTCTAGGCATAAACATTGCTGGTGGATGTGATGGAGCTGAAGTATTGCACGTTGCATTGGTACGACTATCTGCTTT-G
ATTTGCTAATGTGTTGAAATGCTACAACAGGC----AATAATATATTTTGAATACGATTTGTGAGGTT-TGAACCA----
----TTTGAATTGTAAATATCCAGATGCCTACATAGGTAGCGTCATAGCATGCACCCGCAAACTACTGTCAATTTGGTTA
TATGGGTTCACGCTTGTGAGTGACACCAACACACACATCAATTGAACTGATGGGGTTCATGCTTGTGAGTGACACTAACA
CA------------------------------------------------------------------------------
-----------------------------------------------TACATCAATTAAACTGATGGCG-----------
-----ATGCCAAGAGAAAACTACTTCATTTTGGATTGCAAATGATATCTAAATGTTGAATAGGAATGGGCTCAAAGTGTT
AAATTTGCATTAATATTCATTCTTTGGGATCTAGTTGATTTTAAATACCAGTCATGTGATAGT
>chr3B_341
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--------------------AAATGGCACGCAACTGCATATCCTTCAGGCCGACCAGATTCAAAGGCAGCGAAAGCTGCA
TTTTTAACAGACTGAGCACAGACTCCCAGCAAAAAGTGTAAATACTGAGCCCAAACAGCATCAGGGCATCTCCAGCAGTT
TGTTTGTTAGCTTGTTAGTAAAATATATCTTGTGATCAGCTGACACCTTAACATATATCTCGTCCAATAGATTGTATTTA
GTTTTTTTAATAGGATGTGAGATAATAAATAAGGTGCTCTCTCATTCTACATAGAAGCTTGTGCAAGGAGCGTTGGTTCA
TGTACATAGTACAATCTTATTCTAGTTTCTCGTTTATTGTGTGACAGATCATCAAAAATTCCATGTGACAAAGACTATCA
AAACTATTTTACAACCATTGAAGATGCCCGCATAAGACTGTCCATGGCGGGCGGGGTGGTTCCGACGGGGTGGAGCTCAA
GGTTAA--------------------------------------------------------------------------
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-----------------------CAAGCCGAGCAGAAAAAACAAAAGAAAAGGCAAACTCTTC----------TCCGATG
GGGAGGATCATTCAGTACGAGTCCACGTTTGTTTTGTTTCCTTGTCCAGTTGGATGCAAGAGATCAATCATCATACGGTA
CACACATACATATCTCCGATCGGGCCTAAGAAATCCAGCATTGCTTTTACCCACAGTGTACGTCTTCGATCCCCGTTCCT
CGTACGTCCCGCCGCCATGAGCCAGAGCGAGGGCAACTCGACGGCCTCCGTGATGGACGACGAGGACCTCCTGTGGGAGA
TCCTTCTCCGCCTCCCGCCACAACCGTCTTCACTCCCGCGCGCCTCCGCGGTCTGCAAGCGATGGCGGCGCATGGCCACA
GACCCCAGCTTCCTCCGCAGCTTCTACGCACACCACCGAAAACCACCCCTCCTAGGCTTCTTCGAGTACCAACGTGACAA
TGTTGTGTTCACCTCCATCCTCGATGCTCCCGATCGCATCCCTCGTGAGCGTTTTAACATTGGAGGCA------------
------------------GCATTACCTCCTCAGAGAGCTATGTGCTTGGGTGTCGCCACGGTCGCGTCCTCATGATTGAC
CATGTGCGCACAGAGCTCTTCGTGTGCACCCCTATCACTGGCGAGCAGCGCCGCTTGGCCGTTCCGCCGGTGTTCAAAAC
AGTCCTCCATACTTGCATCAACGGGGCGGTTCTCTGCGCTGCCAACGACCAGGGCCACGTGCACGGCGGCTGTCACTCTA
GCCCCTTTAAGGTGGTCCTGGTGATCATGTATAGAGACGA---TCATCAACCCCTCGCATGTGTCTACTCCTCGGAGGCC
AATGCATGGGGCAATCTCATCACAGGGGCTGCCCCATGTCGTCTTTTTAATGCCCATAGACCTGGGTCGCTTATTGGTAA
TGCATTCTACTGGCTG---ACTATG---------AGGAATGACATGCTTGTGTTTGATTTGGTAGAGCAAAGTCTAGCTG
TGCTTAGTGGG-CCACCAGTTAAAAATCTTTTCGTCCATAGTCAGATCATCC------AAGTTGAGGATGGCGTTGTTGG
CTTTGTCGTATTATCTTATCCACACTTTCAAATATGGCAGAGGAAACTCAATGATCATGGTGTTGCCACATGGATGGAGT
GGAAGACCATTGGAATGCATAATATTCTTGCCCTCCCTCCTCAGATT---------------GTCAGAGGCGGGGAAACA
ATACTAGGATATTCAGAGGATGCTGATGTGTTTTTTATATATGTGGACGTCAAGTTCTATATGGTTCAGTTTAGGTCAAT
GCAATCCAAGATACTTGATGAAGCATATTATATCACTGACTACCATCCTTTCACAGGGTTTTATTCACCAGGTAACTGTT
CATACTCAGTATTTCTATCGTAGCAGTAACCCAATTCAATTATTTTTTCTACATGGCT--CAAACATATATAT-------
-------------TGTGCTTCTTAAGTCACTAACAA-TTAAGCTTAATCAACAATTGTCCCTTTGCTAGGTAGACAGATT
TAAATTATCATTAGTTGTTTTTTACACTACTAGTGTC---AAAAACGCTCTTATATTATGGGACAGAAGGAG--------
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----------------------------------------------------------------------TAGCTGAGTA
AACTGCTTTCAGAACATTCCTTGCATATAGAAG-----AGATGCAGTGCTTTCATTATGAAGTATCTAAGCAAATTGCTT
TCAGAACATTCCATGCATCTAAAATAGATGCAATTCTTTCATTATGAAGTAT----CTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNT------TATGTTGCAAGTTTAAAAGTTGAGTCG-----------------------------------
----------------------------TAATTCATCTAT-A-AAAAGTGATTTATTTTCCTCAAGTCACGTTTGTCAGC
TCAACTGTGTAGA---CTTACTCGTGCCTTCCATCATCCATTTGCTTCTTCC-------------------AAGTTTTAT
GCTTCTAGGCATAAACATTGCTGGTGGATGTGATGGAGCTGAAGTATTGCACGTTG---TGGTACGACTATCTGATTTCG
ATTTGCTAATGTGTTGAAATGCTACAACAGGC----AATAATATATTTTGAATACGATTTGTGAGGTT-TGAACCA----
----TTTGAATTGTAAATATCCAGATGCCTACATAGGTAGTGTCATAGCATGCACCCGCAAACTACTGTCAATTTGGTTA
TATGGGTTCACGCTTGTGAGTGACACCAACACACACATCAATTGAACTGATGGGGTTCACGCTTGTGAGTGACACTAACA
CA------------------------------------------------------------------------------
-----------------------------------------------TACATCAATTAAACTGATGGCG-----------
-----ATGCCAAGAGAAAACTACTTCATTTTGGATTGCAAATGATATCTAAATGTTGAATAGGAATGGGCTCGAAGTGTT
AAATTTGCATTAATATTCATTCTTTGGGATCTAGTTGATTTTAAATACCAGTCATGTGATAGT
>chr3A_850
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----------------------CCACGTTTGTTTTGTTTCCTTGGCCAGTTGTGTGCCACAAATCAATCATCATACGATA
T--ATATAG---TCTCCGATCGGGCTAAGAAATCCAACCTTTGCTTTTACCCCCAGCATACGTCTTCGATCCCCGTTCCT
CGTACGTCCCGCCGCCATGAGCGAGAGCGAGGGCAGCTCGACGACCTCCGTGATGGATGACGAGGACCTCCTGTGGGAGA
TCCTCCTCCGCCTCCCGCCACAACCGTCTTCCCTCCCGCGCGCCTCCGCGGTCTGCAAGCGATGGCGGCGCATGGCCATA
GACCCCAGCTTCCTCCGCAGCTTCTACGCACACCACCGGAAACCGCCCCTCCTAGGCTTCTTCGAGTACCAACGTGACAA
TATTGTCTTCACCTCCATCCTTGATGCTCCCGATCGCATCCCTCATGAGCGTTTTAACATCGGACGCT------------
------------------GTATCACCTCCTCAGAGGGCTATGTACTTGGCTGCCGCCATGGTCGCGTCCTCGTGATTGAT
CATGTGTGTACAGAGCTCATTGTGTGCACCCCTATCACTGGCGAGCAGCGCCGCTTGGCCGTTCCTCCCGAGTTTAAAAC
AGTCCTCCGTACTTCCATCAACGGGGCGGTTCTCTGCACTGCCAACGACCAGGGCCATGTGCACGGCGGCTGTCACTCCA
GCCCCTTTAAGGTGGTCTTGGTGATCATGTATAGAGACAA---TCAGCAATCCCTCGCATGTGTCTACTCCTCGCAGACC
AATGCATGGGGCAACCTCATCTCAACAGCTGCCCCATGTCGGCTTTTTATTGCTCATAGACCTGGGTCACTTATTGGTAA
TGCATTCTACTGGTTG---ACTACG---------AGGAATGACATGCTTGTGTTTGATTTGGTGGAGCAAAGTCTAGCTG
TGCTCAGTGGG-CCACCGGTTAAAAATTGTTTCCTCCATAGTCAGATCATCC------AAGTTGAGGATGGCGTTGTTGG
CTTTGTCGTATTATCTTATCCGCACTTTCAAATATGGCAGAGGAAAATCAATGATCATGGTGTTGCCACATGGATGGAGT
GGAAGACCATTGAAATGCATAATATTCTTGCGCTCCCTCCTCAGATT---------------GTCAGAGGCGCGGAAACC
ATACTAGGATATTCAGAGGATGCTGATGTGTTTTTTATATATGTGGATGTCAAGTTCTATATGGTTCAATTTAGGTCAAT
GCAATCCAAGATAATTCATGAAGCATATTATATCACTGACTACCATCCTTTCACAGGGTTTTATTCACCAGGTAACTTTT
CATACTCAATATTTCTATTGTAGCAGTAACCCAATTCAATTATTTTTTCTACATGGCT--CAAACACATATAT-------
-------------TGTGCTTCTTAAGTCACTAACAA-TTAAGCTTAATCAACAATTGTCCATCTGCTAGGTAGACAGACT
TAAATTATCATTAGTTGTTTTTTACACTACTATAGTGTCAAAAAACGCTCTTATATTATGGGACGGAGGGAG--------
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----------------------------------------------------------------------TAGCTGAGTA
AACTGCTTTCAGAACATTCCTTGCATATAGAAGAGAATAGATGCAGTGCTTTCATTATGAAGTATCTAAGAAAATTGCTT
TCAGAGCATTCCATGCATCTAAAATAGATGCAATTCTTTCATTATGAAGTAT----CTAAGTATAT------TGCTTTCA
GGAATCTTTTTTGCATTTATAGATGTTT----------------------------------------------------
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--------------TTTCTATATTGCAAGTATAAAAATTGAGCCA-----------------------------------
----------------------------TAATTCATCTAT-A-AAA-GTGATTTATTTTTCTCAAGTCACGTTTGTCGGC
TCAACTGTGTAGA---CTTACTTGTGCCTTCCATCATCCATTTGCTTCTTACTAGGCACTGTCATCAGTTGAAGTTTTAT
GCTTCTAGGCATAAACATTGCTGGTGGATGTGATGGAGCTGAAGTATTGCACATTGCATTGGTACGACTATCTGCTCT-G
ATTTGCTAATGTGTTGAAATGCTACAACAGGC----AATGATATATTTTGAATACGATTTGTGAGGTTATGAACCA----
----TTTGAATTGTAAATATCCAGATGCCTACATAGG--------TAGCATTCACCCACAAACTACTGTCAATTTGGTTA
TATGTGTTCACGCTTGTGAGTGACACCAACACACACATCATTTGAACTGATGGGGTTCACGCTTGTGAGCGACACTAACA
CATACTCCCTCCGTCCGGAAATACTTGTCATCAAGATGAATAAAAGGGGATGTATCTAGACATATTTTAGTTCTAGATAC
ATCCTTTTTTATCCATTTTGATGACAAGTATTTCCCGACGGAAAGAGTACATCAATTAAACTGATGGTG-----------
-----ATGCCAAGAGAAAATTACTTCATTTTGGATTGCAAATGATATCTAAATGTTGAACAGGAATGGCCTCGAAGTGTT
AAATTTGCATTAATATTCATTGTTTGGGATCTGGTTGATTTTAAATACCAATCATGTGATAGT
>chr3D_850
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----------------------CCAAGTTTGTTTTGTTTCCTTAGCCAGTTGGATGCCAGAGATCAATCATCGTACGGTA
CACACATATATATCTCCGATCGGGCCAAAGAAATCCATCCTTGTTTCTACCCCCAGCGTACGTCTTAGATCTCCGTTCCT
CGTACGTCCCGCCGCCATGAGCAAGAGCGAGAGCAACTCGACGGCCTCCGTGATGGACGACGAGGACCTCCTGTGGGAGA
TCCTCCTCCGCCTCCCGCCACAACCGTCTTCCCTCCCGCGCGCCTCCGCGGTCTGCAAGCGGTGGCGGCGCATGGCCACA
GACCCGAGCTACCTCCGCAGCTTCTACGCACACCACCGGGACCCGCCCCTCCTAGGCTTCTTCGAGTACCAACGTGACAA
TATTGTGTTCACCTCCATCCTCGATGCTCCCGATCGCATCCCTCGTGAGCGTTTTAACCTCGGACGCTACGGTTGCTACC
ACGAGGACGGCGCACCCGGCATCCCCTCCTCAGAGAAATACGTGCTTGGGTGCACAG-----------------------
-----------AGAGCTCGTCGTGTGCACCCCTATCACTGGCGAGCAGCGCCGCATGGCCGTTCCGGCGGAGTTCAAAAT
AGTCCCCCG---TTGCATCAACGGGGCAGTTCTCTGTGCTGCCAATGACCAGGGCCACGTGCACGGCGGCTGTCACTCCA
ACCCCTTTAAGGTGGTCTTGGTGATCATGTATAGAGACGAC---CATCAACCCCTCGCATGTGTCTACTCCTCGGAGACC
AATGCATGGGGCAACCTCATCTCAACAGCCGCTCCATATCGGATTTTTAATGCTCGTAGACCTGGGTCACTTATTGGTAA
TGCATTCTATTGGTTG---ACTACG---------AGGAATGACATGCTTGTGTTTGATTTGGTGGAGCAATGTCTAGCTG
TGCTCAGTGGGGCCACCGGTTAAAAATTGTTTCATCCATAGTCAGATCATCC------AAGTTGAGGATGGCGTTGTTGG
CTTTGTCATATTATCTTATCCACACTTTCAAATATGGCAGAGGAAAATCAATGATCATGGTGTTGCCACATGGATGGAGT
GGAAGACCATTGAAATGCATAATATTCTTGCGCTCCCTCCTCAAATT---------------GTCAGAGGCGCGGAAACT
ATACTAGGATATTCAGAGGATGCTGACGTGTTTTTTATATATGTGGACGTCAATTTTTATATGGTTCAATTTAGGTCAAT
GCAATCCAAGATACTTCATGAAACATGCTATATCACTGACTACCATCCTTTCACAGGGTTTTATTCACCAGGTAATTCTT
CATACTCAGTATTTCTATTGTAGGAGTTACCCAATCCAATTATTTTTTCTACATGGCT--CAAACATATATATATATATA
GACACACACATTGTGTGCTTCTTAAGTCACTAACAA-TTAAGCTTAATCATTGATTGTCCCTTTGCTAGATAGACAGACT
TAAATTATCATTAGTTGTTTTTTACACTACTATAGTGTCAAAAACA-CTCTTATATTATGGGACGGAGGGAG--------
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----------------------------------------------------------------------TAGCTGAGTA
AACTACTTTCATTATGAAGT----------------------------------------AGTATCTAAGCAATTTGCTT
TCAGAACATTCCATGCATCTAAAATAGATGCAGTTCTTTCATTATGAAGTAT----CTAAGTATA------CTGCTTTCA
GGAATCTTTTTTGCATTTACAAATGTAGTTTTT-----------------------------------------------
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-----------T------TATATTGCAAGTATAAAAGTTGAGCCA-----------------------------------
----------------------------TAATTCATCTAT-AAAAA-GTGATTTATTTTTCTCAAGTCACGTTTGTCAGC
TCAACTGTGTAGA---CTTACTCGTGCCTTCCATCATCCATTTGCTTCTTCCTAGGCACTGTCATCAGTTGAAGTTTTAT
GCTTCTAGGCATAAACATTGCTGGTGGATGTGATGGAGCTGAAGTATTGCACGTTGCATTGGTATGACTATCTGCTCT-G
ATTTGT---------------CTACAACAGGC----AATAATATATTTTGAATATGATTTGTGAGGTT-TGAACCA----
----TTTGAATTGTAAATATCCAGATGCCTACATAGGTAGCGTCATAGCATTCACCCACAAACTACTGTCAATTTGGTTA
TATGTGTTCACGCTTGTGAGTGACACCAACAGACA--TCATTTGAACTGATGGGGTTCACGCTTGTGAGTGACACTAACA
CA------------------------------------------------------------------------------
-----------------------------------------------TGCATCAACTAAACTGATGGATTGCAAATGATA
TCTAAATGTCAAGAGAAAATTACTCCATTTTGGATTGCAAATGATATCTAAATGTTGAACAGGAATGGCCTCGAAGTGTT
AAATTTGCATTAATATTCATTCTTTGGGATCTGGTTGATTTTAAATACCAGTCATGTGAAAGT
>chr3B_1308
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---------------------------------AGAACTACGTGCTCGGATGTCGCCACGGTCGTGTCCTCATCATTGAC
TCTGCATCCATGGAGATCGTCGTGTGCGCCCCTGTCACTCACGAGCAGCGCCGCGTGGCCATTCCGCCTAAGTTCAAAAA
GGTTTTACACTACGTT---AACGGGGCGGTGCTCTGTGCTGCCCGCAACCAGGGCCACGTGCATGGCGGCTGTCACTCCA
GCCCTTTCAAGGTCGTCTTGGTGATCATGTACAGCGAGGACAATCATCGACCCCTTGCATGTGTTTATTCCTCTGAAACC
GACACATGGGGCAATCTCATCTCAACGTCCGTTCCATGTGTGGTTATTGATGCTTATAGACCGGGGTCACTCGTTGGTAA
TGCACTCTATTGGTTGGATACTATG---------ACAAATGGCATGCTTGAGTTTGATTTGAAAGATGAGAGTCTAGCTA
TGATCAGTGGT-CCACCGGTTGCAGATCACTCCAGCCATAGTCAGATCATTC------AGGGTGAGGATGGCGCTCTTGT
CTTTGCCATATTGTCTTATCCACGCTTCTATATGTGGAACAGGAACATCAATGATCACGGTGTTGCCACGTGGGTGATGT
GGAAGACCGTTGAAATGCACAACATTCTTCGGCCCCCT------CTTCAGACTGAGAGAGGGGTGAGAGGGGCAAAAACT
ATACTGGGATATTCGGAGGATACTGATGTGATTTTTATATATGTGAACGGTAGTGTCTACATGGTTCATCTTAAGTCAAT
GCAATCCAAAAACCTTCATGAAACAAGCTATATCACTGACTACCATCCTTTCACAGCTTTTTATTCCCCAGGTAATTGCT
CATGCTCGGTCTTACTA---------------------------------------------------------------
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>chr3B_1323
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------------------------------------------------GCTGCCGCCAAGGTCGTGTCCTCACCATTGAA
CATGTGTGCAAGGAACTCATCGTGTACACCCCAGTCACGGGCGAGCAGCGTCACATGGCCATTCCGTCCGATTTCAAAAC
ATTCGTCTACCA---CATCAGTGGGGCTGTGCTTTGCGCTGCCAGCAACCAAGGTCACGTGCACGGTGGTTGTCACTCCA
GTCCCTTCAAGGTGGTCTTGGTGATCATGAACCAACAAGACGATCATCGACCTCTCGCATGTGTTTACTCCTCGGAGACT
GGTTCATGGGGCAAACTCATCTCAACAGACATTCCATATTTGATTTTCACTGCTCATAGACCCGGGTCACTTGTTGGCGG
TGCACTCTACTGGTTGGTTACTACGATGAGTTGCAGGAATGACATGCTTAAGTTTGATTTGGAAGAGCAGACTCTAGCTG
TTATCAATGGG-CCACCGGTTACAGATCGTCCCCTCTGTTGTCAGATCATCCAGGCCGAGGCCAAAGATGGTGCTGTTGG
TTTTTCCGTTTTATCTTACCCACGCTTACAAATGTGGCAGGGGATTATGAATATTCCTGGTGTTGCCACATGGGTGATGT
GGAAGACCATTGAAATGAACAACATTCTTGGGCTCCCTCCTCAGATTCAGGC------AGGGTGGAGAGGGTTCGAAACC
ATACTGGGATATTCCGAGGATACATATGCTATTTTTATATACGTGGACACCAGTGTCTACATGGTTCAACTTAAATCAAT
GCAATCCAAGAGACTTCACAAAACAATTTATATCAATGATTACCATCCTTTGACAGGTTTCTATTCACCAGGTATTTTTT
CAATCCTAGTCTTTGTATTGTAGCAGCGACG--------TTATGTTGTGTACACGGTTGCCAAACATCTATAT-------
-------------TGTGCTTCTTAAGTCACTAACAACTTAATCATAATCAACAAGTTTCCTTTTGCTAGATAGGCACACT
TAACTTGTGGCCATATTTTTTGATGTTACATGGGTAAAAATGTAAAAGGAAAACTAGTGGCTGCACCCACCTTCGGTGCA
CCCACGAGGCACCCACGCAAGAAAACATAACAAAACATTTAAAATATTCTAAAACTTCATGGAAATGATCATCAACAATT
GTTATGGGTGCTTGCAAAGTTTGGTGATCAAATAACATTCGGCGAGCTCTGTACAAAAAAGACAAAATTACAAAATCTGC
TCAAACTGTGCACTTACATTTTGACTAATTTTCAGTGATTTTGTCTTTTTTGTACAGAGCTCCTCGAATGTTATTTGACC
ATCAAACTTTGCAAGCGTCCATAACATTTGTTGATGATCATTTCCACAAAGTTTCGGAATTTTTTGAAATGTTTTGCTAT
GTTTTCTTGCGTGGGTGCACCGAGCTAAGGGTGTAGAACCACTCTCTAAATCAAATGTCACATGAGTAAAAATGTAAAAT
CAAATATCACTTAGTAACTTAATTGGCATTTTCGTAATCTCAACGCCTTTTCAAATCTCAATAATAAAATAGTATCTTGA
ATCCATACCATCAGAAATAATATGTTTGCCTCACTTGTTGAAGACCCTCCCGCAGGTGACCAAGACATATAGAACATACC
ATATTAAATTTCCTTTCATGGCTCTACTTGGACTCCATTAATATAAACCCGCATGCCCAAAATTACTTTTGTTGATAAAG
TTTATTAGTTTGGTGTGTTTTGCTAATTTTGTATGCTTGATATGATGAGGAGCGCAAAAAGGAAAGAGGAGCGAGTTTAC
ATGAGATAAATCTAGACCATGTCTTGGTTCTTCCTATCAGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCTAGGTA
AACTGCTTTCAGGAACATTCCG----------------------------------------------------------
-------------TGCATTTACAATAGATGTAGCTCTTTCATTATGAAGTATATATCTGAGCATA------CTATTTTTA
GGCACA-TTCTTGCATTTACAATTGATGTTGTT-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------TTGTTTATATATTGCTAGTAAAAAATCCGGGATCTATTGAGTCCGGGAGATCCTACGTCCCAAGCAAGC
AAGCAACCTAGCTGCCTGCTACGTACACTAGTTCGTCTAT-AAAAATATGAGTTATTTTGCTCAAGTTGTGTTCGTAGGC
TCAACAGTGTAACCGCCTTACTGTTATCTTTCATTATCCATTTGTCCTTTCCTTGGCACTTTCATTAATTGAATTCTTAT
GCTTCTAGGTATAACCATTGCTGGTGGATGTGATGGAGCTGAAGTGTTGCATGATGCACTGGGATGACAATCTACTTT-G
ATTTGCTAATGTGTTGGAATGTTTCAGCAAGTAATAAAGAATATCACTTGATTACGATTTGTGAGATT-TGGACCATTTG
ATTTTTTGAGTTGTAAATATCCGGTTGCCAACATAGGTAG----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>chr3D_1451
--------------------------------------------------------------------------------
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----------------ATCAATGGGGCAGTGCTTTGTGCTGCCAGCGACCAAGGCCACGTGCACGGCGGTTGTCACTCCA
GTCCTTTCAAGGTGATCTTGGTGATCATGAACCAACAAGAAGATCATCGACCTCTCGCATGTGTTTACTCCTCAGAGACT
GGTTCATGGGGCAAACTCATCTCAACAGACACTCCATATTTGATTTTCACTGCTCATAGACCCGGGTCACTTGTTGGCAA
TGCAGTCTACTGGTTGGTTACTACGATGAGTTACGGGAATGACATGCTTAAGTTTGATTTGGAAGAGCAGACTCTAGCTG
TTATTAATGGG-CCACCGGTTACAGATCGTCCCCACTGTGGTCAGATCATCCAAGCCAAGGCTGAAGATGGTGCTGTTGG
TTTTTCCATTTTATCTTACCCGCGCTTACAAATGTGGCGGGGGAATATGAATATTCCTGGTGTTGCCACATGGGTGATGT
GGAAGACCATTGAAATAAACAATATTCTTGGGCTCCCT------ATTCAGGC------AAGGTGGAGAGGGTTCGAAACC
ATACTGGGATATTCGAAGGATACATATGCTATTTTTATATACATGGACACCAATTTATACATGGTTCAACTTAAATCAAT
GCAATCCAAGAGACTTCACAAAACAATTTATATCAATGATTACCATCCTTTGACAGGTTTCTATTCACCAGGTATTTGCT
CAATCTTAGTATTTGTATTGTAGCAAGGACG--------TTATGTTGTGTAAATGGTTGCCAAACATCTATAT-------
-------------TGTGCTTCTTAAGTCACTAACAACTTAATCTTAATCAACAAGTTTCCTTTCGTTAGATAGACACACT
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS-------S---S---S-------------------------S----SS-------S----
----S----S-------S--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S---SS--SS----------S--SSS------------S----S-S-------S------
S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS---S--------------S----S----------------SSSSSSSSSS-------
------------------------------S-------------------------------------------------
-------------------------------------S------------SSSSS-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S--------SS------------------------S--------S--------
------------------------------S-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S-----------------------------
------------------------------------------S-------------------------------------
-------------------------------------------S-S----S-------------------------S---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
------------------------S-------------------------------------------------------
-------------------------------------------------------------------------S------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
------------------------------------------------------------------S-------------
---------------------------------------------------------------S-S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------SSSSS---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------S--------S------------------------------
-----------------------------------------------------------------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------S-------
---------------------------------------------------------------
>forward_847
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------CTTAGGAGCGGGCATGTAGG---------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------
>reverse_1891
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GCCCTCGCATGTGTCTACTC----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>forward_849
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TAGGAGCGGGCATGTAGGAT-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>reverse_2706
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------AAAGGAGTAGCTGAG
TAAACTGCT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
