>input_sequence_59550
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-------------------------------------------------------------------------GCAGTTG
CAGACACTCGAGACCTGCGGCCTAGGCTAGGTACTAGCATTCGTGGCCGGGGAGGTAGCAGTGGTGGATCCATGGCCGTG
GGCGCGGCGAGCAGGCGGTACATCGGGCCCCTGCTGTGCATCAACCTCGTCATGCACGCGGCCGTCCTCGGCATCGCCGG
CTGGTCGCTCAACAAGTTCATCGACCGCGAGACGCACCGCCGTACGTA--------------------------GTACGT
CCTTGCGTGCGACATGATCGATCTGGTCTGGTTAACGACGTGA----CGCGGTGTGCAGATCTAGGAGGCAACACGGCGA
CGGGGTACCTGCTCGTCTTCTCGCTCATGGCCGGGGTGGTCGGCGCCTGCTCGGTGCTCCCCGCCCTGCTCCACGTCAGG
GCGCCCTGGCGCAGCGAGAGCCTCGCCGCCGCCGCCTCCACCGTGCTCGTCTCCTGGGCGCTCACCGCCCTCGCCTTCGG
GTTCTCTTCT------ACACTCTCACCGCCAGTT------------TCACTCGCCATCTGCTAGTGATAGTACGTAACTC
ACACTGCCGTGCCATCTTTTCTTGAACATCTGCAGCCTCGCGTGCAAGCACATCACTCTAGGGAACCGAGGAAGGCGCCT
GGTACGTCGTCGTCAGTCAATGCTAGTTCTACACGCACCGGTGCATCTATCCTTGTAAATTTTCTGCGTTTCCTCTCGGT
GATTCTACTTCTGAACTCTGTGTTGGTCTTGCTAGCAGAGGACGTTGGAGGCGTTCATCACGATCTCGACGCTGACGCAG
CTCTTCTACCTGCTTCTGCTCCACGCCGGCGCCTTGAGCGGGGTGCATGGAGTTGGACAGGCCTGCGGGAGCCACGGCGA
AGCCTGCTGCCGCGAGATCCCTCGGGGAGAGCTCGCCGCGGACCATAAGACGGCGGGAGGGGTTCCGTCCCCGGATGCAT
GACCAAGCGTACTACCAGAAACTTGAATTGTACTGAGTGTCAACAACTGTATCGAGTGCAGTTCATCGGCCACTCG-TAT
GGTAAGCAATTTGCCAGGCGCAGGATGACGTACTCGGATTTCTGATTATTTCCGTAGGCCCTTGGTAGAGAAATAACACT
CAGGACAATAGGGATACATGTCATCTGAGACGCAGATGATGGAAATACAGACGGACTTTATCT-----------------
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>chr6A_1_TraesCS6A01G292700
CCGGCGTACGTCAGCACGGTGGACTTGTTCTCGACCGCGTCCCACTGCGACAAAGCAAACAACACGTACGCACCGTTGCT
CAAGCCGATCAGCTCGCCGTTCTACGTACTCCCCAAATACGTATTAGCGCCTCCTGTTCTGAGAGTACCTTGGCTTTCAG
GTCGTCGACGAGCTCGTCGCCGCTCGCGGCAGAGGTGTCACCGGAGGAGGCCTTCGCCCGGAGCAGAGAGAGCCGCGGCG
CATCTGGTT-AACACATCGTACTAATTGTTAAGGCGTCTACGTATCTGAGGTGACAAGATGA--------------ACGC
AGTATAGGTACCGTCCGCACCTTGGAGGCGACGAGGGGAGAAGTGACGCCGTGGGAGAAGAAAGGTTGGCGGCGCGCCGG
CGGGGAGGCGT---------GCTCCTGCTACACCCAGAAGCGCCGTAGAGCACGCCGTTGCGGCCATGTTCTCACCTGCA
AGCTCTTCTCTGGCTCTGGCCTACGCTGACACCCTCCT-AGTCCTGCGCGTCCCTGGGCCTCTCTTTCTCCTTGTGTCCC
GGGCGGA----ATTTGATTTGATGCTTTTGCGCGGTGATCGGCCACATGGCAGGATGGTGGGCTCTGATTGGCCGGCTGC
CTATCTTAGAAATCTGTGGCTGGCCCCCAGCGTTTGGTTGGCTGTCCTAGGTACAGAGGTCTCAGCTCACAGCTCCGTAC
TCCATACCAG---ACCACATTGTCCCGTAGGAGTACATCGGTGGGCTTACCTCGTCCATGCAAGCTGCAACGGCGGCCGG
CAGTCGCCGTCCGAAGCTGGCCCATGTTACTATGTACGCG-TGCCTTTGCGTGGCACACGGTTCTAGCGCGGGGCCCGTC
CTCCATGCTAGCTTCGCGTGCACAACAGCATTGCCGTTGCACGAAGCTTTTAGTTCGCGTCATCACAAACACACCCCGCA
ATAAAAGATTCATTTCATGCTTGCAGCTCCACTGACACTAGTAACATAGCGACCAGAGTCACCGGATCAATTTGCAGTTG
CAGACACTCGAGACCTGCGGCCTAGGCTAGGTACTAGCATTCGTGGCCGGGGAGGTAGCAGTGGTGGATCCATGGCCGTG
GGCGCGGCGAGCAGGCGGTACATCGGGCCCCTGCTGTGCATCAACCTCGTCATGCACGCGGCCGTCCTCGGCATCGCCGG
CTGGTCGCTCAACAAGTTCATCGACCGCGAGACGCACCGCCGTACGTA--------------------------GTACGT
CCTTGCGTGCGACATGATCGATCTGGTCTGGTTAACGACGTGA----CGCGGTGTGCAGATCTAGGAGGCAACACGGCGA
CGGGGTACCTGCTCGTCTTCTCGCTCATGGCCGGGGTGGTCGGCGCCTGCTCGGTGCTCCCCGCCCTGCTCCACGTCAGG
GCGCCCTGGCGCAGCGAGAGCCTCGCCGCCGCCGCCTCCACCGTGCTCGTCTCCTGGGCGCTCACCGCCCTCGCCTTCGG
GTTCTCTTCT------ACACTCTCACCGCCAGTT------------TCACTCGCCATCTGCTAGTGATAGTACGTAACTC
ACACTGCCGTGCCATCTTTTCTTGAACATCTGCAGCCTCGCGTGCAAGCACATCACTCTAGGGAACCGAGGAAGGCGCCT
GGTACGTCGTCGTCAGTCAATGCTAGTTCTACACGCACCGGTGCATCTATCCTTGTAAATTTTCTGCGTTTCCTCTCGGT
GATTCTACTTCTGAACTCTGTGTTGGTCTTGCTAGCAGAGGACGTTGGAGGCGTTCATCACGATCTCGACGCTGACGCAG
CTCTTCTACCTGCTTCTGCTCCACGCCGGCGCCTTGAGCGGGGTGCATGGAGTTGGACAGGCCTGCGGGAGCCACGGCGA
AGCCTGCTGCCGCGAGATCCCTCGGGGAGAGCTCGCCGCGGACCATAAGACGGCGGGAGGGGTTCCGTCCCCGGATGCAT
GACCAAGCGTACTACCAGAAACTTGAATTGTACTGAGTGTCAACAACTGTATCGAGTGCAGTTCATCGGCCACTCG-TAT
GGTAAGCAATTTGCCAGGCGCAGGATGACGTACTCGGATTTCTGATTATTTCCGTAGGCCCTTGGTAGAGAAATAACACT
CAGGACAATAGGGATACATGTCATCTGAGACGCAGATGATGGAAATACAGACGGACTTTATCTACCACAAAGTGGTTTGA
TCTTATGTGTTCGAAAAATAAACACTCGATCCTCGATATAGTTTTTAGAGCGTGACGTTGGCAAATCCGGCGCCGAATGA
T--CCATCAAACATCATGTCGGACAATCACGCTTCTCGCATCAAAACCCTTGCAAATCCATGCACGTCGGTCGATCGCAC
AGTTGTAATTTATCACCAATACAATGCAACAAAGCAAAATGAACCATAATTCAAGATTAAAACATGACAAAACGAAATTC
AACATCCGGGCCGCGTCCGTTGTGGCAGCGGACGCTCTTTCCCCCTTGTACTCCCTGCGCAGATTGATCTCCCTCTTCCT
CTTCTCAACCCAATTATTACCTTCCGTGTCCAAGAGATTTGCATCGGTAAATATTATCCTCGGGTCCTTCGTGTCTCAAG
AAAGTTGTAATATCTTCTGCTTGAGCTATATTGCTTCAAAAGTCCGGGCCTTCTCGAGCTCTCATTTGGCACACGCATCT
TGCTTCTTAAGGTCTATATTCTCCCTCCCAATTTGTCGGAGTAATGGGCCACGGGTAGGCCAACCTGAGCCCATAACCTT
TCAAGACATTGAGGCAGGCTGCGCCCCTCAAGACCACAGGGCGAAGAGCAGCCTCCTGGGGAGTCTACGGCAAGGCGGAC
GACTGCCCGCTCACGGCCAAGTCCCAGGGGCGACTTCCAGAGAAGCCGGTTTTGGGGAGTCGGCCGGCGACTCCAACAAC
CCGTGACCTCATCGAAGGGGACGGGGCAGGGGCGTGGCTACAATGAAGCCCACTCCCCGCCCCTTACCAAGGGCAGGCAT
GGCTACAGCACGTCGTACTTGGGAAGATCTCCCCGCGGCGTGGCACTGTTGCCCGGCCGGCCCTGACATCAGCACCACTG
TACCAGGTCCTGCGCCCACGACGGCTTGTCTGTACGGCCTGGAGGCAGCGGGGACCACCAGTCAGCAAGACCTCGGCAGA
CGGCGGGAGAACCGCCAGTCGGACC
>chr6D_1
CCGGCGTACGTCAGCACGGTGGACTTGTTCTCGACGGCGTCCCACTGCGACAAAGCAAACAACACGCACGCACCGTTGCT
CAAGCCGATCAGCTCGCCGTTCTACGTACTCCCCGAATACGCATTAGCGCCTCCTGTTCTGAAAGTACCTTGGCTTTCAG
GTCGTCGACGAGCTCGTCGCCGCTCGCGGCAGAGGTGTCATCGGAGGAGGCCTTCGCCCGGAGCAGAGAGAGCCGCGGTG
TATCTGGTTAAAAACATCGTGCTAATTGTTAAGGCGTCTACGTATCTGGGCATCGCCATTGCGGAATGAATGTAGCACGC
AGTATAGGTACCGTGCGCACCTTGGAGGCCAAGAGGGGAGAAGTTACGCCGTGGGAGGAGAACGGACCGCGGCGCGGCGG
CGGCGCGGACGGGGAGGCGCGCTCCTGCTCCACCCAGAAGCGCCGTAGAGCACGCCGTTGTGGCCATGTTCTCACCTGCA
AGCTCTTCTCTGGCTCTGGC-TATGCTGACACGCTCCTTAGTCCTGTGCGTCCCTGGGCCTCTCTTTCTCCTTGTGTCCC
GGGCCGA----ATTTGATTTGATGCTTTTGCGCGGTGATCGGCCACATGGCAGGATGGTGGGCTCTGATTGGCCGGCTGC
CTATCTTAGAAATCTGTGGCTGGCCCCCAGCGTTTGGTTGGCTGTCCTAGGAACAGAGGTCTCAGCTCACAGCTCCGTAG
TCCATACCAGACCACCACATTGTCCCGTAGGAGTACATCGGTGGGCTTACCTCGTCCATGCAAGCTGCAACGGCGGCCGG
CAGTCGCCCTCCGAAGCTGGCCCATGTTACTATGTACGCG-TGCCTTTGCGTGGCACACGGTTCTAGCGCGGGGCCCGTC
CTCCATGCTAGCTTCGCGTGCACAACAGCATTGCCGTTGCACGAAACTTCTAGTGCGCGTCATCACAAACGGCCCCGGCC
CCTCGGCTGGACGCTCGAACACTTCCAGTAG-------TAGTTACATAGCGACCAGAGTCACCAGATCAATTG-----TG
CACACACTCGAGACCGACGG--------------TAGCATTCGCGGCCGGGGAGCTAGCAGTAGTGGATCCATGGCCGTG
GGCGCGGCGAGCAGGCGGTACATCGGGCCCCTGCTGTGCATCAACCTCGTCATGCACGCGGCCGTCCTCGGCATCGCCGG
CTGGTCGCTCAACAAGTTCATCGACCGCGAGACGCACCGCCGTACGTA--------------------------CTACGT
CCTTGTGTGCGACATGATCGATCTGGTCTGGTTAACGACGTGAGTGACGCGGTGTGCAGATCTAGGAGGCAACACGGCGA
CGGGGTACCTGCTCGTCTTCTCGCTCATGGCCGGGGTGGTCGGCGCCTGCTCGGTGCTTCCCGCCCTACTCCACGTCAGG
GCGCCCTGGCACAGCGAGAGCCTCGCCGCCGCCGCCTCCACCGGGCTCGTCTCCTGGGCGCTCACCGCCCTCGCCTTCGG
GTTCTGCCCT------ACACTCGCACCGCCAGT------AATGTAATCACTCGCCATCTGCTAGTACGTA---GTAACTC
ACAGTGCTGTGCCATCTTTCCTTGAACATCTGCAGCCTCGCGTGCAAGCACATCACTCTAGGGAACCGAGGAAGGCGCCT
GGTACGTCGTCAGC---CAATGCTAGTTCTGCACGCACCGGTGCATCTATCCTTGTATATTA-CTGCTTTTCCTCTCGGT
GGTTCTAGTTATGAATTATGTGCTCGTCTTGCTAGCAGAGGACGTTGGAGGCGTTCATCACGATCTCGACGCTGACGCAG
CTCTTCTACCTGCTTCTGCTCCACGCCGGCGCCTTGAGCAGCGTGCATGGAGTTGGACAGGCCTGCGGGAACCACGGCGA
AGCCTGCTGCCGCGAGATCCCTCGGGGAGAGCTCGCCGCGGACCATAAGACGGCGGGAGGGGTTCCGTCCCCGGATGCAT
GACCAAA---ACTACCGGGAACTCGAATTGTACTGAGTGCCAACAACTGTATCGGGTGCAGTTCATCGGGCACTCGGTAT
AGTGAGCAATTTACCAAGCGCGGGATGACACGCTCGTG--------TATTTCCGTAGGCACTTGGTAGACAAATAACACT
CAGGACAATAGGGATACATGCCATCTGAGAC-CAGATGATGGAAATACAGACGGACTTTTTATCTACCAAGTGGTTTAAA
TCTTAAGTGTTCGAAAAATAAACACTCGGTCCTCGATATAGTTTTTAGATCATGAGGCATTACCCTCCACAGCGCCGCAC
GAGCCATCAAACGTCATGTCGGACAACCATGTTTCTCGCATCAACCTTGAATCCATG-----------------------
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>chr6B_1
CCGGCGTACGTCAGCACGGTGGACTTGTTCTCGACGGCGTCCCACTGCGACAAAGCAAACAACACGTACGCACCGTCGCT
CAAGCTGGTCAGCTCGCCGTTCTACCTAGCTTACCAAAGGTC----GCGCCTCCTGTTTCGAGAGTACCTTGGCTTTCAG
GTCGTCGACGAGCTCGTCGCCGCTCGCGGCAGAGGTGTCATCGGAGGCGGCCTTCGCCGGGAGCAGAGAGAGCCGCGGTG
CATCTGGTT-AACAGATCGTACTAATTGTTAATGTGTCTACTTATCTGGGCATCGCCATTGCG----GAATGTAGTACGC
AGTATAGGTACCGTGCGCGCCTTGGAGGCGAAGAGGGGAGAAGTTACGCCGTGGGAGAAGAACGGTTGGCGGCGCGCCGG
CGGGGAGGCGT---------GCTCCTGCTACACCCAGAAGCGCCGTAGAGCACGCCGTTGCGGCCATGTTCTCACCTGCA
AGCTCTTCTCTGGCTCTCGCCTATGCTGACACGCTTCT-AGTCCTGTGCGTCCCTGGGCCTCTCTTTCTTCTTGTGTCCC
AGACTCTAATCATTTGATTTGATGCTTTTGCGCGCTGATCGGCCACATGGCAGGATGGTGGGCTCTGATTGGCTGGCTGC
CTATCTTAGAAATCTGTGGCTGCCCCCACTGTC-TGGTTGGCTGTCCTAGGAACAGAGGTCTCAGCTCACAGCACCATAC
TCCATACCAG---ACCACATTGTCCCGTAGGAGTACATCGGTGGGCT---------------------------GGCCGG
CAGTCGCCGTCCGAAGCTGGCCCATGTTACTATGTAGTACCTGCCTTTGCGTGCAGACGGTACAAGCGGAC---CCCGTC
CTCCAGGCTAGCTTCGCGTGCACAACAGCATTGCCGTTGCACGAAACTTCTAGTGCGCGTCATCACAAACGGCC----CC
CCTCGGCTGGACGCTCGAACACTTCCAGTAG-------TAGTTACATAGCGACCAGAGTCACCAAATCAATTGCC-----
--CACACTCGAGACCTGCGGCCTAGGCTAGGTACTAGCATTCCTGGCCGGGGAGCTAGCAGTGGTGGATCCATGGCCGTG
GGCGCGGCGAGCAGGCGGTACATCGGGCCCCTGCTGTGCATCAACCTCGTCATGCACGCCGCCGTCCTCGGCATCGCCGG
CTGGTCGCTCAACAAGTTCATCGACCGCGAGACGCACCGCCGTACGTTACGTAGTACTACGTCTTGCAGTGGTCGTACGT
CCTTGCGTGCGACAT----GATCTGGTCTGGTTAACGACGTGA----CGTGGTGTGCAGATCTAGGAGGTAACACGGCGA
CGGGGTATCTGCTCGTCTTCTCGCTCATGGCCGGGGTGGTCGGCGCCTGCTCGGTGCTCCCCGCCCTGCTCCACGTCAGG
GCGCCCTGGCACAGCGAGAGCCTCGCCGCCGCGGCCTCCACCGGGCTCGTCTCCTGGGCGCTCACCGCCCTCGCCTTCGG
GTTCTGCTCTACACTCACACTCGCACCGCCTGTTTCAAAAATGTAATCCCTCTCTATCTGCTACTCC-AGTACGTAACTC
ACAGTGCTGTGCCATCTTTTCCTGAACATCTGCAGCCTCGCGTGCAAGCATATCACTCTGGGGAACCGAGGAAGGCGCCT
GGTACGTCGCTATCTGCTAGCAACTCATCAC------------------------------A-CTGCTTTTCCTTTCGAT
GATTCAACTTATGAATTATGTGTTCGTCTTGCTGGCAGAGGACGTTGGAGGCGTTCATCACGATCTCGACGCTGACGCAG
CTGTTCTACCTGCTTCTGCTCCACGCCGGCGCCTTGAGCGGGGTGCTCGGAGTTGGACAGGCCTGCGGGAACCACGGCGA
AACTTGCTGCCGCGAGATCCCTCGGGGAGAGCTCGCCGCGGACCATAAGACGGCGGGAGGGGCTCCGTCCCCGGATGCAT
GACCAAA---ACTACCGGAAACTTGAATTGCACCGAGTACCAGCAACTGTATCGAGTGCAGTTCATCGGGCACTCG-TAT
GGTAAGCAATTTACCAAGCGCAGGATGACACCCTCGTG--------TATTTCCGTAGGCACTTGGTAGACAAATAACACT
CAGGACAATAGGGATACATGT-----------------------------------------------------------
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>SNPs
-----------------------------------S--------------------------------------------
----------------------------------S------S--------------------------------------
----------------------------------------S-------------------------------------S-
------------------------------------------------S-SSSSSSSSS--S------------------
--------------S----------------S------------S-----------------S-----------------
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-----------------------S--------S-------------S---------------------------------
----S---------------------------------------------------------------------------
---------------------------------------------------S----------------------------
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---------------------------------------------S---S----S---------------SSS---S--S
SSSSSSSSSSSSSS--SSS-SSSSSSSSSSSSSSSSSS----S--------------------S--------SS-SSS--
--S---------------------------------------------------S-------------------------
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----------S--------------------------------S------------------------------------
-----SS---------------S------------------------------------------SSS------------
---S---S------------------------------------------------------------------------
-----------S--S-S-------------S--------------------------S---SS----S------------
----------S----S-S------S-------------------------------------------------------
----------------------------------------------------------------------S---------
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------SSSS------S----------------------S-----------------------------S----------
------------S---S------------SSS----SSSSSSSSSS-------------S---------S----------
-------------------------------S---------------------------S-S-SSSS---SSS-S--SS-
-----S----------------------S--------------------S-S---S-SSSSSSSS---SSS--SSSSSSS
S-----------S-------------S--S-S------------SSSSSSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1024
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--------------------------------------------CATAGCGACCAGAGTCACCG----------------
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>reverse_2615
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------------------------------------------------------TATCCTCGGGTCCTTCGTGT------
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