>input_sequence_59520
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---------------------------------------------------------------------ATGGTGGTCCT
CGCGAAGCCCGCGGCGCTGGAGCAGATCACGCTGCTGAGGCCGCCGGAGCCGTGGGAGAGCTTCTCGGGCGTCCCGGCCG
TGGACCTGTCCGGCCCCGACGCGGCGGCGGACGTGGTGCGCGCGTGCGAGCGCTTCGGGTTCTTCAGCGTCGTGAACCAC
GGCGTGCCGGCGGGCGTGGTGGACCGGCTGGAGGCCGAGGCCGTCCGGTTCTTCGCGTCGTCGCAGGCGGAGAAGGACGC
GTCGGGCCCCGCCGACCCGTTCGGGTACGGCAGCAAGCGCATCGGCCGCAATGGCGACATGGGGTGGGTGGAGTACCTCC
TCCTCGCCATCGAGCGCGACACGCTCTCCAAGGCCTCCCCGGCGCCGTCGACCGCGCTGAGGGACGCGATCAACGCGTAC
GTGGGCGCCATGCGCGGGCTGGCGAGGACGGTGCTGGAGATGGTGGCGGAGGGGCTGGGCGTGTCGCCGCGGGGCGCGCT
GGCGGACATGGTGACGGGCGACGTGGCGAGCGACCAGGTGTTCCGGGTGAACCACTACCCGCCGTGCCCGCTGCTGCAGG
GGCTGCCGCCCAACTGCAGCGTCACCGGGTTCGGCGAGCACACGGACCCGCAGCTGGTGTCCATCCTGCACTCCAACGGC
ACGCCCGGGCTCCAGGTCGCGCTCCACGACGGGCGCTGGGTGTCCGTCCCGCCCAACCGCGACGCCTTCTTCGTCAACGT
CGGCGACTCCCTCCAGGTACACACA----TTCCCTCAGGCTCATCCCATGCACCGG----CGGACGGACCGACGACGACC
GGCGTACGGCGGCAGCAGGAACAATAATTAACGAATCGGCCGGGGTCGGTGCAGGTTCTGACGAACGGGAGGCTGAGGAG
CGTGCGGCACCGGGTGGTGGCCGGCAACGGGCTCAAGTCCCGCGTGTCGATGATCTACTTCGGCGGGCCACCGCTGGCGC
AGAGGATTGCACCGCTGCCGCAGCTGCTGGCGGGGACGCAGAGCTTGCCCCTCTACAGGGACTTCACATGGGGAGAGTAC
AAGAAGGCGGCCTACCGCTCTCGCCTCGGCGACAACCGGCTGGCCCCCTTCGAGGCGCCACCTGTCGCCACGCCAGACGC
CGACCGCCACCGGTCCTAG-------------------------------------------------------------
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>chr1D_1_TraesCS1D01G336900
AACTCATCATTCATGGTCAAGTACCCCGCTATTTACTCTAAGAAACAACATGGCGTTCGAAAATAAACTCAATGGTATTT
GACCGAACACCTACCGGGCGTGGTGACCGCCATGGACGACGTCGGCATGG-GGAGTGTACCTGCCTACAGACGGGTTTGG
GGTGGACGCCACCATCATAAAAGGCGAGTGGGTGCGTCGGCGCTGGTTGTATACAAACTTGCGTTG--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------G
ATGACACAACATGTCCGGACTGTACGATTTGGAGTTTAGACGTATGCGGGCGGTTTGAGGGTTCGGGTTGG-GATGCCCC
TAACCGGGAATAGGAATAGAAAGAAGAAGAAGATAGGAAGCCCTTGACGACAGGCTTCGTATATGAGCACGAGTTGGAAA
AGAAACACAGGGGTGCGTACAGGAACACCGTCCGTCGGTCCATGCATGATTGAGCAGCGTAGCATCGGCCACAGCACCCA
TCACCCTCCTCATTCCCGGACCCCAGCGCACCGGCGGATGGCATCGGCACACGTCGCCCCTCCCGGCTAATCGCCACGCC
CGGGATTCAGTTGGCGGCAACTCCGGGCTCACTCAATACGGAAAAGGCAGTCGAGACAGGTCAGTCGATCGATGCGTGCA
CCCACACGACACGGGGTGAACAGCTCCTACCAACGTTGTCCATTCCCTCCCATTAGTTTCTCTACCCACATTCCCGCCGC
GTACGTACGTCGCCGCCTCTTCGCCCCCCCGCGCGCCCACTGGCAACCGCCACTGCCACCTCGAGTCA----------TC
GGCGACCTCCTCCCCCCCGCCACCACTATATATACGTACGCGCCATGAACGCCTTCCTCACTCCCCATCTCCCACTCGTG
CACCACCACAGCTCGAGCTCTCATCAGCAGTGCGCCACTGTTACAATCGTTG----TAGCTTGTACGGCCCTGCTTGTTC
GGTTCAGGGATTGGTCGCTCGCTCTGCTCTGCTTATTTGCTTGGCCCAGCTCTGCTCTGTTTCTTGGCAATGGTGGTCCT
CGCGAAGCCCGCGGCGCTGGAGCAGATCACGCTGCTGAGGCCGCCGGAGCCGTGGGAGAGCTTCTCGGGCGTCCCGGCCG
TGGACCTGTCCGGCCCCGACGCGGCGGCGGACGTGGTGCGCGCGTGCGAGCGCTTCGGGTTCTTCAGCGTCGTGAACCAC
GGCGTGCCGGCGGGCGTGGTGGACCGGCTGGAGGCCGAGGCCGTCCGGTTCTTCGCGTCGTCGCAGGCGGAGAAGGACGC
GTCGGGCCCCGCCGACCCGTTCGGGTACGGCAGCAAGCGCATCGGCCGCAATGGCGACATGGGGTGGGTGGAGTACCTCC
TCCTCGCCATCGAGCGCGACACGCTCTCCAAGGCCTCCCCGGCGCCGTCGACCGCGCTGAGGGACGCGATCAACGCGTAC
GTGGGCGCCATGCGCGGGCTGGCGAGGACGGTGCTGGAGATGGTGGCGGAGGGGCTGGGCGTGTCGCCGCGGGGCGCGCT
GGCGGACATGGTGACGGGCGACGTGGCGAGCGACCAGGTGTTCCGGGTGAACCACTACCCGCCGTGCCCGCTGCTGCAGG
GGCTGCCGCCCAACTGCAGCGTCACCGGGTTCGGCGAGCACACGGACCCGCAGCTGGTGTCCATCCTGCACTCCAACGGC
ACGCCCGGGCTCCAGGTCGCGCTCCACGACGGGCGCTGGGTGTCCGTCCCGCCCAACCGCGACGCCTTCTTCGTCAACGT
CGGCGACTCCCTCCAGGTACACACA----TTCCCTCAGGCTCATCCCATGCACCGG----CGGACGGACCGACGACGACC
GGCGTACGGCGGCAGCAGGAACAATAATTAACGAATCGGCCGGGGTCGGTGCAGGTTCTGACGAACGGGAGGCTGAGGAG
CGTGCGGCACCGGGTGGTGGCCGGCAACGGGCTCAAGTCCCGCGTGTCGATGATCTACTTCGGCGGGCCACCGCTGGCGC
AGAGGATTGCACCGCTGCCGCAGCTGCTGGCGGGGACGCAGAGCTTGCCCCTCTACAGGGACTTCACATGGGGAGAGTAC
AAGAAGGCGGCCTACCGCTCTCGCCTCGGCGACAACCGGCTGGCCCCCTTCGAGGCGCCACCTGTCGCCACGCCAGACGC
CGACCGCCACCGGTCCTAGCCGGCCAACGTACGGCATACATCGCCGCGACATACTTCCTTGGTAGCTTTCGTACGTGTCG
ACGTACGTACACAACGGGAGCTGCTGATTGCTCCGTCCATGCCGGCCTCCGCAGGCCGTGGCCCATGGGTGACCTGGCTG
GATGTAAAGCTACGTACCTAAGCTTGGACCGGGAGGGTGGGCGTCCTGCCATCCTGCATGCCGTTGCCGCGGTGGCCGGT
GCCGGTGGGCGCGGCGCTGGGGCGAACCTCGATCCTGCCGATCTGTTTGGTCAAATGTACAGTAGT---AGCACTAGGGG
TGGATCCATGAACCGAGCTTACATTGGCCGGTTCACTAGCCGCTAACAGTTGACGTGCGGTGAAAGTTTGATGTGTGTCG
GAGCCTTTCCAACACGTGTGGTCTGGTTACTAAAACTACCCATAATGAGAGTAACATAGGTAGTAACATCACATATATCT
AGATAAAATAGATGATGTGGCAAGTAATAAATGAAGAAAGAGAGACATGTGGTAACATAACTAGTTACTACTAGTATGAG
TAACATCACACATATCAAGGCAAGATGAGTCTATAGTCTAATAAATGAAGTGTTGCATGTTACCACATATATGTTTTACT
CCCCACTATAGGGGTAGTAACATAGAGTAGTAACATGGGCAATGTTACTACTCTATGTTACTACCCATTGTGGCTAGTCT
AAGAGCATCTCCAACAGAAGCCCAAAAAACGGCGCGCTAAAATAATTTTACAGCGTCATTTTAGTAATTTTAGCGCGCCG
TGGCCGATTCAGTCCAGCAAAGGCACAAAAATATAGCGCGCAAAGGACAGCGCGCAGCAGTCCAACAGACGCACTAAAAA
ATAAAGCGTCACAAATATATCTACAACAAACAGGTCCCTAAACATTTACAAATAAGTCCATCTGATCAAAACAAAAACGC
AATTGGGTCCCCAATGGTTGGAGCAAGCTAGCTTGCTGACCTTGCAAATCATCTTCCGCCGG
>chr1A_1
AACTTATCATCCATGGTCAAGTACTCCGCTATCTACTCTAAGAAACAACATGGCGTTCGAAAATAAGCTCAATGGTATTT
GACAGAACACCTACTGGGCTTGGTGACCGCCATGGACGACATCGGCAGGGTGGAGTGTACCTGCCTACAGACGGTTCCGG
GGTGAACGCCACCGTCATAAAAGGCGAGTGGGCGCGTCGGTGCTGGTTGTGGAGGTCCGCCAACGATTGTGTACCGGCTG
GAGAGGTACATCGACGGTGCCAGAGGAGGAGGACGCGGATGCAAAGTCAGGGGGGAGAAGGGGCGGATTGGAAGAAAATG
GGACCGATAGGGGGGATTTAGTGGGCCGGGGTGTCAGGGTCCTACGTGGCTTCTGTCCAGACTCCGGCAAAGTCCCCCCC
CCCCCTCCCCAAAAAAAACTTTGTCTCAGTTTTGCAGTGGAAAATGCGTTAGGACCACTAGGCAGGCTGATACAAACCCG
ATGACACAACATGTCCGGACTGCATGA-------TTTAGATGTATGCGGGCAGTTTGAGAATATGGGTTGGAGATGCCCC
TAACCGGGAATAGGAATAGAAAGGAGAAGAAGATAGGAAGCCCTTGGCAACAGGCTTCGTATAGGAGCACGAGTTGGAAA
AGAAAGACACAGGTGCGCACAGGAACACCGCCCGTCGGTCCATGCATGATTGAGCAGCGTAGCATCGGCCACAGCACCCA
TCACCCTCCTCATTCCCGGACCCCAGCGCACCGGCGGATGGCATCGGCACACGTCGCCCCTCCCGGCTAATCGCCACGCC
GGGGATTCAGTTCGCGGCAACTCCGGGCTCACTCAATACGGAAAAGGCAGTCGAGACAGGTCAGTCGACCGATGCGTGCA
CCCACACGACACGGGGTGAACAGCTCCTACCAACGTTGTCCATTCCCTCCCATTCGTTTCTCTACCCGCATTCCCGCCGC
GTACGTACGTCGCCGCCTCTTCGGCCCCCCGCGCGCCCACTGGCAACCGCCACTGC----------CA----------TC
GGCGACCTCCTCCCCCCCGCCACCACTATATATACGCGCGCGCCATGAACGCCCTCCTCACTCCCCATCTCCCACTCGTG
CGCCACCACAGCTCGAGTTCTCATCACCAGTGCGCCACTGTTGCGATAGTAGTAGCTTGTCGGCCC---------TGCCT
GGTTCGGGGATCGATCGCTTGCC-----CTGCTTATTTGCTTGGCCCAGCTCTGCTCTGTTTCTTGGCAATGGTGGTCCT
CGCGAAGCCGGCGGCGCTGGAGCAGATCGCGCTGCTGAGGACGCCGGAGGCGTGGGAGAGCTTCTCGGGCGTCCCGGCCG
TGGACCTGTCCGGCCCCGGCGCCGCGGCGGACGTGGTGCGCGCGTGTGAGCGCTACGGGTTCTTCAGCGTCGTGAACCAC
GGCGTGCCGGCGGGCATGGTGGACCGGCTGGAGGCGGAGGCCGTCCGGTTCTTCGCGTCGTCGCAGGCGGACAAGGACGC
GTCGGGCCCCGCCGACCCGTTCGGGTACGGGAGCAAGCGCATCGGGCGCAATGGCGACATGGGGTGGGTCGAGTACCTCC
TCCTCGCCATCGAGCGCGACGCGCTCTCCAAGGCCTCCCCGGCGCCGACGTCGGCGCTGAGGGACGCGATCAACGACTAC
GTGGGCGCCATGCGCGGGCTGGCGAGGACGGTGCTGGAGATGGTGGCGGAGGGGCTGGGCGTGTCGCCGCGGGGCGCGCT
GGCGGACATGGTGACGGGCGACGCGGCGAGCGACCAGGTGTTCCGGGTGAATCACTACCCGCCGTGCCCGCTGCTGCAGG
GGCTCCCGCCCAACTGCAGCGTGACCGGGTTCGGCGAGCACACGGACCCGCAGCTGGTGTCCATCCTGCACTCCAACGGC
ACGCCCGGGCTCCAGGTCGCCCTCCACGACGGGCGCTGGGTGTCCGTCCCGCCCAACCGCGACGCCTTCTTCGTCAACGT
CGGCGACTCCCTCCAGGTACACACATTCCTTCCCTCAGGCCCATCCCATGCACCGGTGGACGGACGGACCGACGACGACC
GGCGTACGGCGGCGACAGGAACAATGATTAACCAATCGGTCGGGGTCGGTGCAGGTTCTGACGAACGGGAGGCTGAGGAG
CGTGCGGCACCGGGTGGTGGCCGGCAACGGGCTCAAGTCGCGCGTGTCGATGATCTACTTCGGCGGGCCACCGCTGGCGC
AGAGGATTGCACCGCTGCCGCAGCTGCTGGCGGGGACGCAGAGCTTGCCCCTCTACAGGGACTTCACATGGGGAGAGTAC
AAGAAGGCGGCCTACCGCTCTCGCCTCGGCGACAACCGGCTGGCCCCCTTCGAGGCGCCACCTGTCGCCACGCCACACGC
CGACCGCCACCGGTCCTAGCCGGCCAACGTACGGCATACATCGCCGCGACATACTTCCTTGGGAGCTTTCGTACGTGTCG
ACGCACGTACACGACGGGAGCTGCTGATTGCTCCGGCCATGCCGGCCTCCGTACGCCGTGGCCCATGGGTGACCTGGCCG
GATGTAAAGCTACGTACCTAAGCTTGGACCGGGGGCGTGGGCGTCCTGCCATGCTGCATGCCGATGCCGCGGTGGCCGGT
GCCGCTGGGCGCGGCGCTGGGGCGAACCTCGATCCCGCCGATCTGTGTGGTCAAATGTACAGTAGTGGTAGCACTAGGGG
TGGATCCATGAACCGAGCTTGCATTGGCCGGCTCACTGGCCGCTAACAGTTGACGTGCGGTGAAAGTTTGATGTGTGTCG
GAGCCTTTCCAACAGGTGTGGTCTGGTTACTAA-----------------------------------------------
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>chr1B_360
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------------------------------------------------------CTTCGTATATGAGCACGAGTTGGAAA
AGAAACACACAGGTGCGTACAGGAATACCGTCCGTCGGTCCATGCATGATTGAGCAGCGTAGCATCGGCCACAGCACCCA
TCACCCTCCTCATTCCCGGACCCCAGCGCACCGGCGGATGGCATCGGCACACGTCGCCCCTCCCGGCTAATCGCCACGCC
CGGGATTCAGTTCGCGGCAACTCCGGGCTCACTCAATGCGGAAAAGGCAGTTGAGACAGGTCAGTCGATCGATGCGTGCA
CCCACACGACACGGGGTGAACAGCTCCTACCAACGTTGTCCATTCCCTCCCATTCGTTTCTCTACGCACATTCCCGCCGC
GTACGTACGTCGCCGCCTCTCCGGCCCCCCGCGCGCCCACTGGCAACCGCCACTGC----------CACCTCGAGCCATC
GGCGACCTCCT-CCCCCCGCCACCACTATATATACGTACGCGCCATGAACGCCTTCCTCACTCCCCATCTCGCACTCGTG
CGCCACCACAGCTCGAGCTCTCATCAGCAGTGCGCCACTGTTACAGCTGTTGTAGCTAGCTTGTACGGCCCTGCTTGTTT
GGTTCACGGATTGGTCGCTCGCTCTGCTCTGCTTATTTGCTTGGCCCAGCTCTGCTCTGTTTCTTGGCAATGGTGGTCCT
CGCGAAGCCGGCGGCTCTGGAGCAGATCACGCTGCTGAGGACGCCGGAGCCGTGGGAGAGCTTCTCGGGCATCCCGGCCG
TGGACCTGTCCGGCCCCGACGCGGCGGCGGACGTGGTGCGCGCGTGCGAGCGGTTCGGGTTCTTCAGCGTCGTGAACCAC
GGCGTGCCGGCGGGCGTGGTGGACCGGCTGGAGGCCGAGGCCGTCCGGTTCTTCGCGTCCTCGCAGGCGGAGAAGGACGC
GTCGGGCCCCGCCGACCCGTTCGGGTACGGCAGCAAGCGCATCGGGCGCAATGGCGACATGGGGTGGGTCGAGTACCTCC
TCCTCGCCATCGAGCGCGACGCGCTCTCCAAGGCCTCCCCGGCGCCGACGTCCGCGCTGAGGGACGCGATCAACGCGTAC
GTGGGCGCCATGCGCGGGCTGGCGAGGACGGTGCTGGAGATGGTGGCGGAGGGGCTGGGCGTGTCGCCGCGGGGCGCGCT
AGCGGACATGGTGACGGGCGACGTGGCGAGCGACCAGGTGTTCCGGTTGAACCACTACCCGCCGTGCCCGCTGCTGCAGG
GGCTCCCGCCCAACTGCAGCGTCACCGGGTTCGGCGAGCACACGGACCCGCAGCTGGTGTCCATCCTGCACTCCAACGGC
ACGCCCGGGCTCCAGGTCGCGCTCCACGACGGGCGCTGGGTGTCCGTCCCGCCCAACCGTGACGCCTTCTTCGTCAACGT
CGGCGACTCCCTCCAGGTACATTCATTCATTCATTCAGGCCCAACTCATGCACCGG----TGGACGGACCGACGACGACC
GGCGTACGGCGGCAGCAGGAACAATAATTAACCAATCGGTCGGGGTCGGTGCAGGTTCTGACGAATGGGAGGCTGAGGAG
CGTGCGGCACCGGGTGGTGGCCGGTAACGGGCTCAAGTCCCGCGTGTCGATGATCTACTTCGGCGGGCCACCGCTGGCGC
AGAGGATTGCACCGCTGCCGCAGCTGCTGGCGGGGACGC---------CCCTCTACAGGGAGTTCACATGGGGAGAATAC
AAGAAGGCGGCCTACCGCTCTCGCCTCGGCGACAACCGCCTGGCCCCCTTCGAGACGCCACTTGTCGCCATGGCACACGC
CGACCACCACCGGTCCTAGCCAAGGA--------CATACATCGCCGCGACATACTACCTTGGTAGCTTTCGTACGTGTCG
ACGTACGTACACAACGGGAGCTGCTGATTGCTCCGTCCATGCCGGCCTCCGTAGGCCGTGGCCCATGGGTGACCTGGCTG
GATGTAGAGCTACGTACCTAAGGTTGGACCGGGAGCGTGGGCGTCCTGCCATCCTGCATGCCGTTGCCGCGGTGTCCGGT
GCCGGTGGGCGCGGCGCTGGGGCGAACCTCGATCCTGCCGATCTGTTTGGTCAAATGTACAGTAGTAGTAGCACTAGGGA
TGGATCCATGAACCGAGCTTGCATTGGCCGGTTCACCGGCCGCTAACAGTTGACACGCGGTGAAAGTTTGGTATGTGTCG
GAGCCTTTCCAACAGGTGTGGTCTGGTTACTAA-----------------------------------------------
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>SNPs
----S-----S-------------S-------S---------------------------------S-------------
---S----------S----S--------------------S------S--------------------------S-SS--
----S--------S------------------S-------S---------SS-SSSS-SSSSSSSS--------------
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----------------------S-S--SSSSSSS------S----------S-------SS-SS----------------
-----------------------S----------------------S-S-------------------------------
---------SS---------------------------------------------------------------------
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------------S-------------------------------------------------------------------
------------------------------------------------------S-------------------------
-----------------------S--------------------------------SSSSSSSSSS--------------
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-S---------------------------------------------S-------------------------------S
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---------S------------------------------S---------------------------------------
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---------------------------------------------S-----------------------S----------
--------------------S--------------------------S--S-----------------------------
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----S---------------------------------------------------------------------------
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----------------------------------------S---------------------------------------
--------------------------------S------S----------------------------------------
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---------------------------------------------------------------------------S----
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---------------------------------------------------S----------------------------
-----------------------------------S--------------------------------------------
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--------------------S----------------S------------------------------------------
--------------S------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_216
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------------------------------------TCGGCGCTGGTTGTATACAA------------------------
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>reverse_1621
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--------------------ACGCTCTCCAAGGCCTCC------------------------------------------
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>forward_503
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---ACACAACATGTCCGGACTGT---------------------------------------------------------
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>reverse_2041
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----------------------------------------TCATCCCATGCACCGGCG----------------------
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>forward_532
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--------------------------------AGTTTAGACGTATGCGGGCG----------------------------
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>reverse_2741
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--------------------ACATTGGCCGGTTCACTAGC----------------------------------------
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