>input_sequence_59509
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-----------------------------------------ATGGCGTCTCCCGCTCCAATCCCGGCAACGCCGCTCCTC
GCCATCGCCATCCTCGCCGTGTTCGTCTCCGCCACCACAGCCGGCCCGGCGTGCTCGGAGTCCGACCGGGACGCGCTGCT
GTCGATCCGCGCGGCGCTGTCGGAGGCGCACCTCGGCGTCTTCTCGACGTGGAAGGGCGCGGATTGCTGCGCCAACTGGT
ACGGCGTGAGCTGCGACCCCACGAGCGGCCGCGTGGCCGACCTGACCCTCCGCGGCGAAGCCGAGGACGCCGTGATGGCC
CCCGACGGCCACCCCGCCTCGGGCGTCATGTCCGGCTACATCTCCGACCACGTCTGCCACCTCGACGCCCTGTCCTCCCT
CATCCTCGCCGACTGGAAGCAGATATCCGGGCCCATCCCGTCCTGCGTCGCCACCTCTCTTCCCAACCTCCGTATCCTCG
AGCTCCCCGCCAACCGCCTCACGGGCGAGATCCCGCCGTCCATCGGCAGCCTCTCCCGCCTCATCGTGCTCAACCTCGCC
GACAACCTCCTCTCCGGCGCCATCCCCAGCTCCATCGCCTCCCTCGCATCCATCAAGCACCTCGACCTCGCCAACAACCA
GCTCACCGGCAGTATCCCAGCCAACATCGGCAACCTCGCCACGCTGAGCCGCGCGCTGCTCAGCCGGAACCGGCTGTCGG
GGCCCATCCCTCCGTCCATCGGGTCCCTCACCCGGCTCGCGGACCTGGACCTCTCCGAGAACCGTCTCACGGGCGCCGTC
CCGGACAGCCTCGGGTCGTCGGGCAGCGGCGTGCTCACGTCGCTGCACCTCGGCGGCAACCGCATCTCCGGGCGGATCCC
GGCGAAGCTGCTGGGGGAGAAGGGGCTCGCGATCGTGAACCTGAGCCGGAACGCCGTGGAGGGCCCCATCCCGGACGCGT
TCACGGGCAGGTCCTACTTCATCGTGCTGGACCTGTCGCGGAACCGGCTGACCGGCGGCGTGCCGCGGTCCCTGGCGTCG
GCGGCGTACGTGGGGCACCTGGACCTCAGCCACAACCGGCTGTGCGGCACCATCCCGGCGGGCCCGCCGTTCGACCACCT
CGCCGCCGAGTCCTTCGCCAGCAACAGCTGCCTCTGCGGGGCCCCGCTCGGCAAGTGCACGTGA----------------
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>chr7A_1_TraesCS7A01G244600
AGACGTGTGAAACCATCCAAACCCGCTTTAGTTTGGTGTAAATTTGCAGGATTTCGGACGCCGGATTGGTCAGAAAAATT
TAGGTAACCGTGGACTAAAAATATCTGGTCCAAATATTTGCGATCGATTTGGTGAGGCGTGATATATAGACGGTGCTACT
GGAGGGGAACTTTTGGTTCCTGAGTACATATGTACCCTATATGAATTTTTTTTAGCAATTCAACAAAAAGTCAAAAATTT
CTGAAATTAACTTGACCTTTCATTGTACTAGTGAGAAAAGTTTCACAAAAAGAAAGTTCCTCTTTGACTTCTTTTAAAAA
AGACAAATTTTCAATCAAAATAGCGTGAATAGTGACCTATAATAGCAAATAAATTTTGTCTTTTTCTATGTGAAGTCAAT
GTTGGTTTTTTTGTGAAAATTTATATACTAGTGCACAAGTAAGTCAAGTTTAATCTATTTTTGAACTATTTTAATTTTTT
ATTTAACTATTTAAAAAAATACCCATTTAAGGTTTATATACATACGGGAGCCAAAGGGTGTTTCTCCGGTACTACTCTGC
TAAAAAAATGCTATTGGTGCAGTAGACCGTAGTAGTAAGGAAAAAAATTATATGAGACCAGGTCTCACGGTTAGCAGGTG
AGACCCGTCCTGATGGATGACACGTGTCATTCACAAATCACAAAGCATCTAATCTCCTCTCCTCCTGATTTTAAGTGGAG
GGTGAGAAATGCTTTGTAATTTGTGAATGCCACGTGTCATTCATCAGGATGGGTCTCGAGTGAGACCTGGTCTTATAGAA
TTCTTTTGTGTAGTAGTATCTTGAAACCGAAAGATGGGTAAATGCATGATGAACGCGGTTCCCC-AAAAATTCACTATGA
ACGCGCTTGCCCGAGGGTAAAACGGCCATTTTGAACACTCCCCCAGCCTCTACTAAAAGCTTTGCTGTGCGAGCTCACTC
CACTCAGCAGGTGTCCACTCCACTCCACTCGAGACAAAGCCATGGCGTCTCCCGCTCCAATCCCGGCAACGCCGCTCCTC
GCCATCGCCATCCTCGCCGTGTTCGTCTCCGCCACCACAGCCGGCCCGGCGTGCTCGGAGTCCGACCGGGACGCGCTGCT
GTCGATCCGCGCGGCGCTGTCGGAGGCGCACCTCGGCGTCTTCTCGACGTGGAAGGGCGCGGATTGCTGCGCCAACTGGT
ACGGCGTGAGCTGCGACCCCACGAGCGGCCGCGTGGCCGACCTGACCCTCCGCGGCGAAGCCGAGGACGCCGTGATGGCC
CCCGACGGCCACCCCGCCTCGGGCGTCATGTCCGGCTACATCTCCGACCACGTCTGCCACCTCGACGCCCTGTCCTCCCT
CATCCTCGCCGACTGGAAGCAGATATCCGGGCCCATCCCGTCCTGCGTCGCCACCTCTCTTCCCAACCTCCGTATCCTCG
AGCTCCCCGCCAACCGCCTCACGGGCGAGATCCCGCCGTCCATCGGCAGCCTCTCCCGCCTCATCGTGCTCAACCTCGCC
GACAACCTCCTCTCCGGCGCCATCCCCAGCTCCATCGCCTCCCTCGCATCCATCAAGCACCTCGACCTCGCCAACAACCA
GCTCACCGGCAGTATCCCAGCCAACATCGGCAACCTCGCCACGCTGAGCCGCGCGCTGCTCAGCCGGAACCGGCTGTCGG
GGCCCATCCCTCCGTCCATCGGGTCCCTCACCCGGCTCGCGGACCTGGACCTCTCCGAGAACCGTCTCACGGGCGCCGTC
CCGGACAGCCTCGGGTCGTCGGGCAGCGGCGTGCTCACGTCGCTGCACCTCGGCGGCAACCGCATCTCCGGGCGGATCCC
GGCGAAGCTGCTGGGGGAGAAGGGGCTCGCGATCGTGAACCTGAGCCGGAACGCCGTGGAGGGCCCCATCCCGGACGCGT
TCACGGGCAGGTCCTACTTCATCGTGCTGGACCTGTCGCGGAACCGGCTGACCGGCGGCGTGCCGCGGTCCCTGGCGTCG
GCGGCGTACGTGGGGCACCTGGACCTCAGCCACAACCGGCTGTGCGGCACCATCCCGGCGGGCCCGCCGTTCGACCACCT
CGCCGCCGAGTCCTTCGCCAGCAACAGCTGCCTCTGCGGGGCCCCGCTCGGCAAGTGCACGTGAACGAGAGGTGGATCGC
CAGAGCCATCCGATCGCGTCGACCCGACTTCGGGTGATTTTTACTACCGTGGCGCCCGTGCGTGTGTGATATACTGTGCT
GATGATGTACCGTAGCCCGGTAGCCGTGTACCGAGGTCCAAGTGCCAACTGTGTGCTTAACTTTTACTATAGTTTTTTTT
--AAAAAAAACTTGTACTATAGGTTGGGTACGGAAGAAGATAAA---TGTACTGCCGATCGTGT----------------
------AATGGAGAGAATCCTCCTCCATTCCCCTTAATTTT-CCTTTTTTTCGTTTGCCAGTGATTTCCATGAGCGTGTG
CTGCT---ACTATGAAGTTTGGACTGTTAAGCTACAAGCACTTTTTTTTGCATGGCAGCACTTGGCGCTGCCGAAAGCAA
GGGCAATGCTGAGAGCCTGTGAGAAGTGTGTATTTTTTTTTTCGGATATTGTCTTTGGAGGCCGAGCTCCATGGAGCTCG
GTTTTGAAAATTTTGAATTTTGCCACTAT---------------------------------------------------
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-------------------TTTAGACTTGTGATTTGCTCCCCCAGTTGCGAACAGCACATGCCGACAACAAACTTAACAT
GAACGTATGGATATGATAATGGTATATGAACCTGTAAACTCGTGCTGCATAATCACCGGAATGTGATTTTGGCCCCTATG
TAATTACTTCCACCAGTTTTCAGGCCTTGCTTCCGGGTACCCTGTCCTGTTCCTTG------ACCAACACAGCACAGTGA
CCAGTGCAGCTGCTCCTGTCGTGTTGCATGAACACACGAAAAACTATTTGAAGCT-AGAGATGGTCAGACTGCACAAGTG
CACAGCCCACATACAGGG-CTTTTTTCCTTTGGTGAACTTTGACAGCTTATCGTTTCGTAC---TACTGCTCTTTACTAC
CGGCTCAAGATCTGAGCAATAGCCGTGCTTGGAAATGCACTGGAATTTTGGACCACTCCCCCGTTCAATTTTAGTAAAGT
CTGAAATAAACCCTGAGATCGTAGACGCCGACGTAAATAAACCCTCACTTTCATTT
>chr7B_1
AGACGTCTGAAACCATCCAAACCCCCATTAGTTTGGTGTAAATTTGCAGGATTTCGGATGCCAGATCGGTCCGGACAATT
TATGTAACCGTAGACTAAAAATATCTGGTCCAAATGTTTGCGATCGATTTGGTGAGGCGCGATATATAGACGGTACTAGT
TCCCTAAATG----------------------------------------------------------------------
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-----AAATGCTACGGGTGCAGTAGACCGTAGTATGAAGCTGG-------------------------------------
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--------------AGTATCTTGAAACCGAAGGATGGGTGAATGCATGA---ACGCGGTTCCTCTAAAAATGCATGATGA
AGGCGCTTGCTCGAGGGCAAAACGGCCATTTTCAACACTGTCCCAGCCTCTACTAAAAGCTTTGCTCTCCGAGCTCACTC
CACTCAGCAGGTGTCCACTCCACTACACTTGAGACAAAGCCATGGCATCTCCCGCTCCAAGCCCGGCCACGCCGCTCCTC
GCCATCGCCATCCTCGCCGTGTTCGTCTCCGCCACCACAGCCGGCCCGGCGTGCTCGGAGTCCGACCGTGACGCGCTGCT
GTCGATCCGCGCGGCGCTGTCAGAGGCGCACCTCGGCGTCTTCTCGACGTGGAAGGGCGCGGATTGCTGCACCAACTGGT
ACGGCGTGAGCTGCGACCCCACGAGCGGCCGCGTGGCCGACCTGACCCTCCGCGGCGAAGCCGAGGACGCCGTCATGGCC
CCCGACGGCCACCCCGCCTCGGGCGTCATGTCCGGCTACATCTCCGACCACGTCTGCCACCTCGACGCCCTGTCCTCTCT
CATCCTCGCCGACTGGAAGCAGATATCCGGGCCCATCCCGTCCTGCGTCGCCACCTCTCTTCCCAACCTCCGTATCCTCG
AGCTCCCCGCCAACCGCCTCACGGGCGAGATCCCGCCGTCCATCGGCAGCCTCTCCCGCCTCATCGTGCTCAACCTCGCC
GACAACCTCTTCTCCGGCGCCATTCCCAGCTCCATCGCCTCCCTCGCATCCATCAAGCACCTCGACCTCGCCAACAACCA
GCTCACCGGCAGTATCCCAGCCAACATCGGCAACCTCGCCACGCTGAGCCGTGCGCTGCTCAGCCGGAACCGGCTGTCGG
GACCCATCCCTCCGTCCATCGGGTCCCTCACCCGGCTCGCCGACCTGGACCTCTCCGAGAACCACCTCACGGGCGCCATC
CCGGACAGCCTCGGGTCGTCGGGCAGCGGCGTGCTCACGTCGCTGCACCTCGGCGGCAACCGCATCTCCGGGCGGATCCC
GGCAAAGCTGCTGGGGGCGAAGGGGCTCTCGATCGTGAACCTGAGCCGGAACGCCGTGGAGGGCCCCATCCCGGACGCAT
TCACGGGCAGGTCCTACTTCATCGTGCTGGACCTGTCGCGGAACCGGCTGACCGGCGGCGTGCCGCGGTCCCTGGCGTCG
GCGGCGTACGTGGGGCACCTCGACCTCAGCCACAACCGGCTGTGCGGCACCATCCCGGCGGGCCCGCCGTTCGACCACCT
CGCCGCCGAGTCCTTCGCCAGCAACAGCTGCCTCTGCGGGGCCCCGCTCGGCAAGTGCACGTGAACGAGAGGTGGATCGC
CAGAGCCATCCGATCGCGTCGACCCGACTTCGGATGATTTTTACTACCGTGGTGCCCGTGCGTGTGTGATATACTGTGCT
GATGATGTACCGTAGCCCGGTAGCCGTGTACCAAGGTCCAAGTGCCAACTGTGTGCTTAACTTTTACTATAGTTTTTTTT
TAAAAAAAAACTTGTACAATAGGATGGGTATGGAAGAAGATAAATAGTGTACTGCCGATCGTGTGTGAGCGAGGAAGAGG
CAAGGAAATGGAGAGAACCCTCCCCCATTCCTCTTCATTTTTCC--TTTTTCACTTGCCATTGATTTCCATGAGAGTGTG
CTACT---ACTATAAAGATTGGACTGTTAAGCTACA--------------------AGCACTTGGCGCTGCCGAAAGCAA
GGGTAATGCTGAGAGCCTGTGAGAAGTGTGTGTTTTTAGTATTTTA----------------------------------
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--------------------TTAGACTCGTGATTTGCTCCCGCAGTTGCGAATAGCACATGCCGACGACAAACTTAACAT
GAACATATGGATATGATAATGGTATATGAACCTGTAAACTCGTGCTGCATAATCACCGGAATGTGATTTTGGCCCCTCTG
TAATTACTTCCACCAGTTTCCAAGCCTTGCTTCCG---------TCCTGTTCCTTG------ACCAACACAGCACAGTAA
CCAGTGCAGCTGCTCCTGTCGTGTTCCATGAGCTCACGAAAAACTATTTGAAGCT-AGAGATGGTCAGACTGCACAAGTG
CACAGCCCACAGACAGGGACTTTTTTCCTTTGGTGAACTTTGACAGGTTATCGTTTCGTACTACTACTGCTCTTTACTAC
CAGCTCAAGATCTGAGCAATAGCCGTGCTTGGAAATGCATTGGAATTTTGGACCACTCTCCCGTTCAATTT---------
--------------------------------------------------------
>chr7D_876
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----------------------------------------------------------------------------ATGA
ACGCGCTTGCTCGAGGGCAAAACGGCCATTTTGAACACTCCCCCGGCCTCTACTAAAAGCTTTGCTCTGCGAGCTCACTC
CACTCAGCAGGTGTCCACTCCACTCCACTCGAGACAAAGCCATGGCGTCTCCCGCTCCAATCCCGGCAACGCCGCTCCTC
GCCATCGCCATCCTCGCCGTGCTCGTCTCCGCCACCACAGCCGGCCCGGCGTGCTCGGAGTCCGACCGGGACGCGCTGCT
GTCGATCCGCGCGGCGCTGTCGGAGGCGCACCTCGGCGTCTTCTCGACGTGGAAGGGCGCGGATTGCTGCGCCAACTGGT
ACGGCGTGAGCTGCGACCCCACGAGCGGCCGCGTGGCCGACCTGACCCTCCGCGGCGAAGCCGAGGACGCCGTCATGGCC
CCCGACGGCCACCCCGCCTCGGGCGTCATGTCCGGCTACATCTCCGACCACGTCTGCCACCTCGACGCTCTGTCCTCTCT
CATACTCGCCGACTGGAAGCAGATATCCGGGCCCATCCCGTCCTGCGTCGCCACCTCTCTTCCCAACCTCCGTATCCTCG
AGCTTCCCGCCAACCGCCTCACGGGCGAGATCCCGCCGTCCATCGGCAGCCTCTCCCGCCTCATCGTGCTCAACCTCGCC
GACAACCTCCTCTCCGGCGCCATTCCCAGCTCCATCGCCTCCCTCGCATCCATCAAGCACCTCGACCTCGCCAACAACCA
GCTCACCGGCAGTATCCCAGCCAACATCGGCAACCTCGCCACGCTCAGCCGCGCGGTGCTCAGCCGGAACCGGCTGTCGG
GACCCATCCCTCCGTCCATCGGGTCCCTCACCCGGCTCGCGGACCTGGACCTCTCCGAGAACCGTCTCACCGGCGCCATC
CCGGACAGCCTCGGGTCGTCGGGCAGCGGCGTGCTCACCTCGCTGCACCTCGGCGGCAACCGCATCTCCGGGCGGATCCC
GGCAAAGCTGCTGGGGGCGAAGGGGCTCGCGATCGTGAACCTGAGCCGGAACGCCGTGGAGGGCCCCATCCCGGACGCGT
TCACGGGCAGGTCCTACTTCATCGTGCTGGACCTGTCGCGGAACCGGCTGACCGGCGGCGTGCCGCGGTCCCTGGCATCG
GCGGCGTACGTGGGGCACCTCGACCTCAGCCACAACCGGCTGTGCGGCACCATCCCGGCGGGCCCGCCGTTCGACCACCT
CGCCGCCGAGTCCTTCGCCAGCAACAGCTGCCTCTGCGGGGCCCCGCTCGGCAAGTGCACGTGAACGAGAGGTGGATCGC
CAGAGCCATCCGATCGCGTCGACCCGACTTCGGATGATTTTTACTACCGTGGCGCCCGTGCGTGTGTGATATACTGTACT
GATGATATACC-TAGCCCGGTAGCCGTGTACCAAGGTCCAAGTGCCAACTGTGTGCTTAACTTTTACTATAGTTTTTTTT
CTAATTTGTAC---TACTATAGGTTAGTCATGGAAGAAGATAAATAGTGTACTGCCGATCGTGTGTGAGCGAGGAAGAGG
CAGGGAAATGGAGAGAATCCTCCTCCATTCCTCTTCATTTC-CC--TTTTTCATTTCCCAGTGATTTCCATGAGAGTGTG
CTACTAGCACTATGAACTTTGGACTGTTAAGCTACA--------------------AGCATTTGGCGCTGCCGGAAGCAA
GGGCAATGCTGAGAGCCTGTGAGAAGTGTGTATTTGTTTACTCCTTTTCTAAAGTCAAACCTCATAAAGTTTGACCAACT
TTATAGAAAAAAAAACGAACATTCACAATGTGAAATCATTATCATTAGATGCGTCGTGACTTAAATTTCCATATTGTATA
CTTTAGCATTGTCAATGTTAATATTTTTCATATAAATATGATCGAAGTTTGATTTCATACAATTCTTATATGCAGAGTAA
AAAAAGCACCGCAGGAGTATTTTAACTCGTGATTTGCTCCCGCAGTTTCGA---GCACATGCGGACAACAACCTTAGCAT
GAGCATATGGATATAATAATGG--TATGAACATGTAAACTCGTGCTGCATAATCACCGGAATGTGATTTTGGCCCCTCTG
TAATTACTTCCACCAGTTTTCAG-CCTTGCTTCCTGGTACCCTGTCCTGTCATGTTCCTTAAACCAACACAGCACAGTAA
CCAGTGCAGCTGCTCCTGTCGTGTTCCATGAACACACGAAAAACTATTTGAAGCCAAGAGATGGTCAGACGGCACAAGTG
CACAGCCCACAGACAGGGACACTTTTCCTTTGGTGAACTTTGACAGCTTATCGTTTCGTACA---ACTGCTCTTTACTAC
CAGCTCAAGATCTGAGCAATAGCCGTGCTTGGAAATGCATTGGAATTTTGGACCACTCCCCCTTTCAATTT---------
--------------------------------------------------------
>SNPs
------S-----------------S-S-------------------------------S---S---S----S-S-S----
--S--------S-----------------------S-----------------------S--------------S---S-
SSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS--------SS-------------------SS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS-----------------S-------S---------SSS----------S--------S--SS----
----------S------S------------------------------------------------S-------------
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-----------------------S--------------------------------------------------------
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-S---------------------------------------------------------------------------S--
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---S-------------S--------------------------------------------------------------
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--------------------S-----------------------------------------------------------
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---------------------------------S----------------------------------------------
--------------------------------S-----------------------------------------------
------------------------------S-------------------------------------------------
-------------------------------S---S--------SS------S---------------------S-----
--S---------------------------------SSSSSSSSSSSSSSSSSSSS------------------------
----------------------------------------S--SS--SS-SSSS-SSS-SSS-SSSSSSSS--SSSSS-S
S-S-S-----SSSSSSSSSSSSS---S-----------------------------------------------------
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---------------------------S-------------S----------S---------------------------
----S------------------------------------------------------------------------S--
------------------------------------------------------------------------------S-
-------------------------S------------------------------------------------------
-----------S--------------------------------------------------------------------
-S-------------------------------------S-------------------------------SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_658
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------------------------------------------------------------------------------TG
AGACCCGTCCTGATGGAT--------------------------------------------------------------
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>reverse_2273
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--------------------------------GAGGTCCAAGTGCCAACTGT----------------------------
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