>input_sequence_59474
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------ATGGTTGCGGCGATGGAGGTGCGTC
CACACCTCCTCCTC---GTCCTTCTCTGCCTCCTCGGCGCCGGCGCCGGATCATGCGTGGCGCAGACTTTGCCGCCGGCG
CCGGTGCCGCAGTCCGG---GGCGGCGGCGGCGCCGAGGCCCACGCCGTTCGGGCGCACCATGTCCACGGT---------
CATCACCGTCGCCATCAGCGTCTTCTTCTTCCTGCTCTTCTTCTGCGCCTACATCAACCAGTGCCGCCTCGCCGAGA---
ACGCCGCGCCGCAGGGGGCGGCGGCCGCCGCGGCCGGGGCCGGGGCGTCCAGGCGGGGGAAGCGCGGGCTGGACCCGGCG
GTGGTGGCCACGTTCCCGATCATGCAGTACAGGGAGATCAAGGAGCACAAGATCGGCAGGGGTGTGCTGGAGTGCGCCGT
GTGCCTCACGGCGTTCGAGGAGGCCGACGACCTCCGGCTGCTGCCGCACTGCTCGCACGCCTTCCACCCCGAGTGCATCG
ACCCCTGGCTCGAGGCGCGGATCACGTGCCCGCTCTGCCGCGCCAACCTCGAGAAGCCGCCGCCGCCGCCGCAGCCGTCC
GCCGTGGCGCCCCCGTCGCCCGAGCAGGTGGCGCGGCGTCAGCCCTCGCCTTCGCCGTCCCCGCCGCACGCCGTGGCGAT
ACCGGTTCGGGAGGAGG---AGGAGGA---GAGCGACGAGGATGACCGGAAGGAGGAGGCGATGGAGCTGGAGATGCTGC
GCAGCGAGCGGCGGGCGGCGAGGCTGCCGAGGTCGCACTCGACGGGCCATTCGCTCTTCGCGGCGTCGGCCGCCGCCGCG
GAGCGGAGCGACCACGAGAGGTTCACGCTGCGGCTGCCGCACCACGTGAGGGAGCAGGTGCTGAGGTCGCGCCGCCTGCG
CCACGCCACCAGCCTGATCGACTTCGCCGGAGCGAGTCCCGAGGGGAGCGTGCGCGGAGGCCGGCCCGCG----------
-----------------GGCGG------CGGCGGCAGCAGCCACGGCGGGCGGCGGTGGCAGGCGTTCCTGGCGAGGACG
ATGTCGTGGGCCCGAGGGGGAGGCGACGGGTCGGTGCGGAAGGGGTGGGACGGGTCCACCCGGCGGGGAAGGGACGACGC
CGAGTCGAGCAGAAAGGGGGCCGCTTCGCCGGCGCCGGCGCCGGCGCGGCCATGA-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------
>chr2A_1_TraesCS2A01G318200
ATAAACTTGGCATTGGCTAAGAAGCCTCCGTGAGTAATGAGAATCTCCTTTTCACCCGCAAAAAAAAAGAGCTGCGTCGA
ACATTTTCTCGTGACGTGCCACGGTTCAACCGAAAAGGTGTGACGAAGTTCAGCAAGGAATAAACATGCCCCAGATACCA
ACTACCCAGGTACTGT-----ACGGCTAAAGCTGAAGTTGGTAACTGACCGCACCCGTG-TCATCCTGTGGCGCTCACGA
TCTGAGTGGCATATGATCGGTACAACTGCTCCACCGGGCAGGCGACATGACATCACCTGCTCGATCACACTTGAGCATGT
TGTTCTCCATGCTCCACACCGTTGGTCCAGGAGGGAAATATCTGGTGCACCGGAGCTTGTGGTGCTACCGGTGTACCGGA
CTCATATTGTGCTTTTAAAATATTCAAAAAATATTCTATGACATCCTGTGCACCGGTAGCATCACAAGTGCGGGTGCACC
AGATACATTCCTTTAGTCCAGGTGTAGCATGCACCGGCAAGACATGAT----TTGCCCATGTCATATG-AAAACCAGTCG
CGATCTAGACGAGCTTGTCTAAGGATTTCTCGGCGTCATTGGGCAATCCTCAGCTACCACACCCACCATTTTCTAAAAAA
CTGGAATGATGCTGTATGTGTATTCTACAATTATGGCAAATTGTATGACATTTACGGTCGGCACGATTATTAATAATCGC
ATCGCATTCAGTGTAGTGTGATGGCAAAATCAGTAGTCAAAGCAGATCAATCTAGATGTAGAAACGTGAAGGGAGGGCCT
GTGGTGTGGTGCATACAAGAGCAAAAGGCAAGCGTCCACTCGTCAGAAAATTTCTGCCCAAGAAAGAAAGG----AAAGG
AAGGTGCGAATTTCCCTCGGGATTTTAGGCGCCGCCGCCGCCGCTAACGTAGCGGCACACCACACCGCCAGCCTCCAGCT
GAGCTCTCTCTCTCTCTCTCTTGTAGAGCAGACCACCGCCTCAGCTGACAATTCTATGGTTGCGGCGATGGAGGTGCGTC
CACACCTCCTCCTC---GTCCTTCTCTGCCTCCTCGGCGCCGGCGCCGGATCATGCGTGGCGCAGACTTTGCCGCCGGCG
CCGGTGCCGCAGTCCGG---GGCGGCGGCGGCGCCGAGGCCCACGCCGTTCGGGCGCACCATGTCCACGGT---------
CATCACCGTCGCCATCAGCGTCTTCTTCTTCCTGCTCTTCTTCTGCGCCTACATCAACCAGTGCCGCCTCGCCGAGA---
ACGCCGCGCCGCAGGGGGCGGCGGCCGCCGCGGCCGGGGCCGGGGCGTCCAGGCGGGGGAAGCGCGGGCTGGACCCGGCG
GTGGTGGCCACGTTCCCGATCATGCAGTACAGGGAGATCAAGGAGCACAAGATCGGCAGGGGTGTGCTGGAGTGCGCCGT
GTGCCTCACGGCGTTCGAGGAGGCCGACGACCTCCGGCTGCTGCCGCACTGCTCGCACGCCTTCCACCCCGAGTGCATCG
ACCCCTGGCTCGAGGCGCGGATCACGTGCCCGCTCTGCCGCGCCAACCTCGAGAAGCCGCCGCCGCCGCCGCAGCCGTCC
GCCGTGGCGCCCCCGTCGCCCGAGCAGGTGGCGCGGCGTCAGCCCTCGCCTTCGCCGTCCCCGCCGCACGCCGTGGCGAT
ACCGGTTCGGGAGGAGG---AGGAGGA---GAGCGACGAGGATGACCGGAAGGAGGAGGCGATGGAGCTGGAGATGCTGC
GCAGCGAGCGGCGGGCGGCGAGGCTGCCGAGGTCGCACTCGACGGGCCATTCGCTCTTCGCGGCGTCGGCCGCCGCCGCG
GAGCGGAGCGACCACGAGAGGTTCACGCTGCGGCTGCCGCACCACGTGAGGGAGCAGGTGCTGAGGTCGCGCCGCCTGCG
CCACGCCACCAGCCTGATCGACTTCGCCGGAGCGAGTCCCGAGGGGAGCGTGCGCGGAGGCCGGCCCGCG----------
-----------------GGCGG------CGGCGGCAGCAGCCACGGCGGGCGGCGGTGGCAGGCGTTCCTGGCGAGGACG
ATGTCGTGGGCCCGAGGGGGAGGCGACGGGTCGGTGCGGAAGGGGTGGGACGGGTCCACCCGGCGGGGAAGGGACGACGC
CGAGTCGAGCAGAAAGGGGGCCGCTTCGCCGGCGCCGGCGCCGGCGCGGCCATGATGAAC-------TCCACACCGCCAC
CGGAACTGCAGTGCAGAGCTTGACTGTAGAAAAATGCGTGTAGTTTGGATT------TGTTTAG-----TTGATGGTATG
GATAAATTTAATTTTTCACCTTTTTAGTAGCCATAGGAAAATATTTGCGTGTGCTCCTGTGAGGCCTGATG-TTTCTCGT
TTCCTTTGACTCTGGCGAAGTGAAACTTTTGGTTCGGTCTGTGGATTCCTCCATCCGATAAAAAGCTTTGGCGAGGGAGA
AGAATCGGAATGTTCACTTTTGGACTTGTGCGCCCGCCT-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------TTTCGCTTACGGATGAGATGACAGCCTCCCCTTTCGTCAAGAGATCAATTTTTGTTTAGTAGA
G----TAATAATAATAATACAACTTTGGTTAAGAGACGGTGTTAGTGGGAGGAGCATTTGCATTTGCAAATCCCATTCTC
GTGGCCGGCGAGGGGCGAGGGGCGAGCGTGAGGCGTAAGGCAGAGCAGATTGCGCCGCTGGTG-TGGTGATGGATGCCTC
TTTAATCATTCCCGGTTTGTCCATCGTTCTTTGCGAGATTCCCGTTTTGGCTGGGCGTCGGTCGATCTTCCCCTTTTCTT
TTCTTCTCCATTTCCACTCCACTGTCTCCCTCACGGTCAATTTAGTACG------CCTATGAATTGGAAGTGAGATTCAT
TCATGTGTGGAACAACTTGGGGGAGGCTCTTGTGCTTAAGAAATCAGCGGATAAGTTTCGCGATACATACAAAAAAATAT
G----TGAGCGGATAAGAACGTGGCGTGGTTGCCACGGGCACCGCCGAGTCCTGGCCTGCGTAGCGGCTGCGTCTGTGCT
AGTGGTAGGAGGATCTAGCAG---------------------------AGGGACCGAGCCGTGTGTCATGGTCGTGGCCC
GGTGCCGTGGTGGAAGACCCAAGGCCAAGGCCAAGGCGGCAACAGAAACGCACCACACGAGAAGCAAACTAGA--TCATG
CATTGCTCGTGAAGAACGGGGTGTATGT--GTACGTCTGCTACTCCATGCCAATAACC
>chr2B_70
---------------------------------------------------------------------AGCTGCGGCGA
ACATTTTCTTGTGACGTGCCACGGTTCAACAGGAAAGGTGTGACGAAGTTCAGCAAGGAACGAACGTGCCTCAGGTGCCA
ACTACGCAG-----GT-----ACGGCTAAAGCTGAAGTTGGTAACTGATTGCACCCGTGTTCATCCTGTGGAGCTCACGA
ATTGAGTGGCATATGATCTGTACAACTGCTCCACGA-GGGTAGGC---GACATCGCCTGATCGGTCACACTTCAGCATCT
TGTTCTC-ATGCTCCACACATTTGG-------------------------------------------------------
--------------------------------------------------------------------------------
-----------------CCAGGTGTAGCATGCACCGGTGAGACAATACATGATTGTCCATGTCATATG-AAAACCAGTCA
CGATCTAGATGAGCTTGTTTAAGGATTTCTTGGCGTCATTGGGCAAGCCTCAGCTACCACACCCACAATTTTCCAAAAAA
CTGGATTGATACTGC------ATTCTACAATTATGGCAAATTGTATGACATTTACGGTCGACAAAAGTATTAATAATCGC
ATCGCATTCAGTGT-----GATGGCAAAATCAGTAGTCAAAGCAGATCAATCTAGATGTAGAAACGTGAAGGGGGGCC--
----TGTGATAC-TACAAGAGCAAAAGGCAAGTGTCCACTCGTCAGAAAATTTCTGCCCAAGAAAGAAAGAAAGAAAAGG
AAGGTGCGAATTTCCCTCGGGATTTTAGGCGCCGCCGCCGCCGCTAACGTAGCAGCACACCACACCGCCAGGCTCCAGCT
GAG----------CTCTCTCTTGTAGAGCAGACCACCGCCTCACCTGCCAATTCTATGGTTGCGGTGATGGAGGTGCGTC
CACA---CCTCCTC---GTCCTTCTCTGCCTCCTTGGCGCCGGCGCCGGCGCCGGGATGGCGCAGTCTTTGCCGCCGGCG
CCGGTGCCGCAGTCCGGGGCGGCGGCGGCGGCGCCGAGGCCCACGCCGTTCGGGCGCACCATGTCCACGGT---------
CATCACCGTGGCCATCAGCGTCTTCTTCTTCCTGCTCTTCTTCTGCGCCTACATCAACCAGTGCCGCCTCGCCGAGA---
ACGCCGCGCCGCAGGGGGCCAACGCCGCCGCGGCCGGGGCCGGTGCGTCCAGGAGGGGGAAGCGCGGGCTGGACCCGGCG
CTGGTGGCCACGTTCCCGATCATGCAGTACAGGGAGATCAAGGAGCACAAGATCGGCAGGGGCGTGCTGGAGTGCGCCGT
GTGCCTCACGGCGTTCGAGGAGGCCGACGACCTCCGGCTGCTGCCGCACTGCTCGCACGCCTTCCACCCGGAGTGCATCG
ACCCCTGGCTCGAGGCGCGGATCACGTGCCCGCTGTGCCGCGCCAACCTCGAGAAGCCGCCGCCGCCGCCGCAGCCGTCC
GCCGTGGCGCCCCCGTCGCCCGAGCAGGCGGCGCTGCATCAGCCCTCGCCTTCGCCGTCCCCGCCGCACGCCGTGGCGAT
ACCGGTGCGGGAGGATG---AGGAGGA---CAGCGACGAGGACGACAGGAAGGAGGAGGCGATGGAGCTGGAGATGCTGC
GCAGCGAGCGGCGGGCGGCGAGGCTGCCGAGATCGCACTCGACGGGGCACTCGCTGTTCGCGGCGTCGGCGGCCGCCGCC
GAGCGGAGCGACCACGAGAGGTTCACGCTGCGGCTGCCGCACCACGTGAGGGAGCAGGTGCTCAGGTCGCGCCGCCTGCG
CCACGCCACCAGCCTGATCGACCTCGCCGGAGCGAGCCCCGAGGGGAGCGTGCGCGGAGGCCGGCCCGCG----------
-----------------GGCGGAGGAGGCGGCGGCAGCAGCCACGGCGGGCGGCGGTGGCAGGCGTTCCTGGCGAGGACG
ATGTCGTGGGCCCGAGGGGGAGGCGACGGGTCGGTGCGCAAGGGGTGGGACGGGTCCACCCGGAGGGGAAGGGACGACGC
CGAGTCGAGCAGAAAGGGGGCCGCTTCGCCGGCGG------CGGCGCGGCCATGACGACGTCGGCAGTCCACACCGCCAC
CGGAACTGCAGTGCAGAGCTTGACTGTAG-AAAATGCTTGTAATTTGCCTT------TTTTTTAGTTGATTGATGGTATG
GATAAATTTAATTTTTCGTGTTTTTAGCTACAG-TAGG-ATTGTTTGCGTGTGCTCTTGTGAGGCCTGAACTTTTCTCGT
TTCATTTGACTCTCGCGAAGTGAACTTTTTG--TCGATCCGCGGATTCCTCCATCCGATAAAAAGCTTTGGCGAGGGAGA
AGAATCGGAATGTTCACTTTTGGACTTGTGCACCCGCCT-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------TTTCGCTTACAGATGAGATGACAGCCTTCCCTTTTGTCAAGAGATCAATTTTTGTTTAGTACA
G----TAAT---------ACAACTTTGGTTAAGAGACGATGTTAGTGGGAGGAGCATT------TGCAAATCTCATTCTC
GTGGCTGGCGAGGT-------GCGAGCGTGAGGCGTAAGGCAGAGCAAATTGCAATTGCGCCGCTGGTGATGGATACCTC
TTTAATCATTCCCGGCTTGTCCATCGTTCTTTGCGAGATTCCTGTTTTGATTGGGCGTCGGTCGATCTTCCCTTTTTCTT
TTCT------TTTCCACTCCACTGTCTCCCTCATGGTCAATTTAGTAGTACTCCTA-TATGAATTGGAAGGAGGGTTCAT
TCATGTGTAGAACAACCTGGGGGAGGCTCTTGTGCTTAAGAAATCAGCGGATAAGTTTCGC----CATACAAAAATATAT
ACACATGAGCGGATAAGAACGTGGCGTGGTTACCACGGGCACCGCTGCGTCCTGACCTGCGTGGTGGCGGTGCTA----T
AGTAGGAGTAGTGTCTAGCAGTAGCGCATCGATCATCTATCCGAGACGAGTGAGGGAGCCGTGTGTCATGGCGCGGTGCC
T---------TGGAAGACGCAAGGCG------AAGCTGGCAACAGAAACGCACCACACGAGAAGCAACTAGATCGTCATG
CATTGCTCGTGAAGAACAGGGCGTATATCCGTACGTCTGCTAGTTCATGCCAA-----
>chr2D_70
---------------------------------------------------------------------AGCTGCGGCG-
ACATTTTCTCGTGACGTGCCACGGTTCAACAGGAAAGGTGTGACGAAGTTGAGCAAGGAACGAACGTGCCTCAGGTGCCA
ACTACCCAG-----GTACTGTACGGCTAAATCTGAAGTTGGTAACTGACCGCACCCGTG-TCATCCTGTGGCGCTCACGA
TCTGAGTGGCATATGATCGGTACAACTGCTCCACCCGGGGTAGGC---GACATCACCTGATCGATCACACTTCAGCATGT
TGTTCTC-ACGCTCCGCATCGTCGG-------------------------------------------------------
--------------------------------------------------------------------------------
-----------------CCAGGTGTTGCATGCACCGGCGAGACATGAT----T-GTCCATGCCATATGAAAAACCAGTCG
CGATCTAGATGAGCTTGTTTAAGGATTTCTTGGCGTCATTGGGCAATCCTCAGCTACCACACCCACCATTTTCCAAAAAA
CTGGAATGATACGTAC--TGTATTCTACAATTATGGCAAATTGTATGACATTTACGGTCGACACGATTATTAATAATCGC
ATCGCATTCAGTGT-----GATGGCAAAATCAGTAGTCAAAGCAGATCAATCTAGATGTAGAAACGTGAAGGGGGGCC--
----TGTGGTGCATACAAGAGCAAAAGGCAAGTGTCCACTCGTCAGAAAATTTCTGCCCAAGAAAGAAAGA----AAAGG
TAGGTGCGAATTTCCCTCGGGATTTTAGGCGCCGCCGCCGCCGCTAACGTAGCCGCACGCCACACCGCCAGGCTCCAGCT
GAG--------CTCTCTCTCTTGTAGAGCAGACCACCGCCTCACCTGCCAATTCTATGGTTGCGGTGATGGAGGTGCGTC
CACA---CCTCCTCCTTGTCCTTCTTTGCCTCCTTGGCGCCGGCGCCGGCGCGGGGATGGCGCAGTCTTTGCCGCCGGCG
CCGGTGCCGCAGTCCGGGGT---GGCGGCGGCGCCGAGGCCCACGCCGTTCGGGCGCACCATGTCGACGGT---------
CATCACCGTCGCCATCAGCGTCTTCTTCTTCCTGCTCTTCTTCTGCGCCTACATCAACCAGTGCCGCCTCGCCGAGA---
ACGCCGCGCCGCAGGGGGCCAACGCCGCCGCGGCCGGGGCCGGGGCGTCCAGGAGGGGGAAGCGCGGGCTGGACCCGGCG
GTGGTGGCCACGTTCCCGATCATGCAGTACAGGGAGATCAAGGAGCACAAGATCGGCAGGGGCGTGCTGGAGTGCGCCGT
GTGCCTCACGGCGTTCGAGGAGGCCGACGACCTCCGGCTGCTGCCGCACTGCTCGCACGCCTTCCACCCCGAGTGCATCG
ACCCCTGGCTCGAGGCGCGGATCACGTGCCCGCTGTGCCGCGCCAACCTCGAGAAGCCGCCGCCGCC------------C
GCCGTGGCGCCCCCGTCGCCCGAGCAGGTGGCGCGGCATCAGCCCTCGCCATCGCCGTCGCCGCCGCACGCCGTGGCGAT
ACCGGTGCGGGAAGAGG---AGGAGGAGGAGAGCGACGAGGACGACAGGAAGGAGGAGGCGATGGAGCTGGAGATGCTGC
GCAGCGAGCGGCGGGCGGCGAGGCTGCCGAGATCGCACTCGACGGGGCACTCGCTCTTCGCGGCGTCTGCCGCCGCCGCC
GAGCGGAGCGACCACGAGAGGTTCACGCTGCGGCTGCCGCACCACGTGAGGGAGCAGGTGCTGAGGTCGCGCCGCCTGCG
CCACGCCACCAGCCTGATCGACTTCGCCGGAGCGAGCCCCGAGGGGAGCGTGCGCGGAGGCCGGCCCGCG----------
-----------------G------------GCGGCAGCAGACACGGCGGGCGGCGGTGGCAGGCGTTCCTGGCGAGGACG
ATGTCGTGGGCCCGAGGGGGAGGCGACGGGTCGGTGCGGAAGGGGTGGGACGGGTCCACTCGGAGGGGAAGGGACGACGC
CGAGTCGAGCAGAAAGGGGGCCGCTTCGCCGGCGG------CGGCGCGGCCATGATGAAC-------TCCACACCGCCAC
CGGAACTGCAGTGCAGAGCTTGACTGTA-AAAAATGCGTGTAATTTGATTTGCTTAATTTTTTAGTTGAGA-----TATG
GATAAATTTAATTTTTCGTGTTTTTAGCTAGGAATATG-AATGTTTGCGTGTGCTCTCGTGAGGCTGAAGTTTTTTCTCG
TTTCTTTGACTCTGGCGAAGTGAAACGTTTTGTTCGATGTGTGGATTCCTCCATAGGATAAAAAGCTTTGGCGAGGGGCA
AGAATCGGAATGTTCACTTTTGGACTTTGTTCGCCGGCCTTTTAGTTGAAAAAGAATTCTATGAGACCAGGTCTCACGCG
ACACCCATACTGATGGATAACACGTGGCATTCACAAAGCACACTTGACCCACCCCCCATTTAAAATCAGGGAGAGAGAGA
TTAGATGCTTTGTGATTTATAAATGCCACGTGTCATTCATCAGAGCGGGCCTCACCTGCTAACCATGAGACCTGGTCTTA
TATAATTTTTTTCCTCGTTTCGCTTACAGATGAGATGACAGCCTCCCCTTTTGTCAAGAGATCAATTTTTGTTTAGTATG
ACTAATAAT---------ACAACTTTGGTTAAGAGACGGTGTTAGTGGGAGGAGCATTTGCATTTGCAAATCTCATTCTC
GTGGCCGGCGAGGT-------GCAAGCGTGAGCCGTAAGGCAGAGCAGATTGCGCCGCTGGTG-TGGTGATGGATGCCTC
TTTAATCATTCCCGGTTTGTCCATCGTTCTTTGCGAGATTCCTGTTTTGGTTGGGCGTCGGTCGATCTTCCCTTTTTCTT
CTTT------TTTCCACTCCACTGTCTCCCTCATGGTCAATTTATTAGTAGTACTCCTGTGAATTGGAAGGAGGATTCAT
TCATGTGTAAAACAACTTGGGGGAGGCTCTTGTGCTTAAGAAATCAGCGGATAGGTTTGGCAGTACTGAAAAAAATAT--
----ATGAGCGGATAAGAACGTGGCGTGGTTACCACGGGCACCGCCGCGTCCTGACCTGCGTACCGGCTGCGTCTGTGCT
AGTAGTAGGAGGATCTAGCAG---------------------------AGGGACCGAGCCGTGTGTTGTGGTCGTGGAGC
GGTGCCGTGGTGGAAGACCCAAGGCG------AAGGCGGCAACGGAAACGCACCACACGAGAAGCAACTAGATC---ATG
CATTGCTCGTGAAGAACAGGGTGTATGT--GTACGT----------------------
>chr3D_1005
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TTGTGGCGATGGGGGTGCGCG
CGCA---CCTCCTCGTCGTCCT---TTGCATCCTCGTCGCCGCCA------CAAGCACGGCTCAGCTATTGCCGCCACCA
CCGGTGCTGCCGCCACTCGGCCCGGCACCGCAGCCGAAGCCACCGCTGTTCGGGCGCGCCATGACGATGGTGATCACGGT
GGTCGCCGTGGCCGTCGGCGTTCTCTTCCTCCTGCTCTTCTTGTGCGCGTACATCACCCAGTGCCGGCTCGTCGAGGACC
ACGACGAGCCGCAAGGGGGGAGCGTCGCGCC------GGGCGGTGTGTCCAGGCGGGGGAAGCGCGGGCTGGACCCGGCG
GTGGTGGCGACGTTCCCGATCGTGCCGTACAGGGAGATCAAGGAGCACAAGATCGGCAGCGGCGCGCTGGAGTGCGCCGT
GTGCCTGACGGAGTTCGAGGACGCCGACGACCTCCGGCTGCTGCCGCACTGCTCGCACGCGTTCCACCCGGACTGCATCG
ACCCGTGGCTGGAGACGCGGACCACGTGCCCTCTGTGCCGCGCCAACCTCGAGAAGCCACCGCCACCGGCTGCCGCC---
------------------------------------------CCAGCGCACTCCTCGCCGCCGCATGCCGTCGTGGCGAT
GCCGGTGCAGCAGGATGAGCCGAAGGAGGACAGTGACAAGGACGACCGTAAGGAGGAGGCCGCAGAGCTGGAGAAGCTGC
GCAGGGAGCGCCGGGCGGCGAGGCTGCTGAGGTCGCACTCGACGGGGCACTCGGCGGGGCAGTGCGACTGCGAG------
---------GACCACGAGAGGTTCACGCTGCGGCTGCCGGAGCAGGTGAGGGAGGAGGTGCT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------
>chr3A_1165
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------CACGGT---------
GGTCGCCGTGGCCATCGGCGTTCTCTTCCTCCTGCTCTTCTTTTGCGCGTACGTCACCCAGTGCCGCCTCGTCGAGGACC
ACGGCGCGCCGCAGGAGGGTAGCGTCGCGCC------GGGCGGGGTGTCCAGGCGGGGAAAGCGCGGGCTGGACCCGGCG
GTGGTGGCGACGTTCCCGATCGTGCCGTACAGGGAGATCAAGGAGCACAAGATCGGCAGTGGCGCGCTGGAGTGCGCCGT
GTGCCTGACGGAGTTCGAGGACGCCGACGACCTCCGGCTGCTGCCGCACTGCTCGCACGCGTTCCACCCGGATTGCATCG
ACCCGTGGCTCCAGACGCGGACCACGTGCCCGCTGTGCCGCGCCAACCTCGAGAAGCCACCGCCACCGGCTGCCGCC---
------------------------------------------CCAGCGCCCTCCTCGCCGCCGCATGCCGTCGTGGCGAT
GCCGGTGCAGCAGGGTGAGCAGAAGGAGGACAGTGACAAGGACGACCGGAAGGAGGAGGCCGCAGAGCTGGAGAAGCTGC
GCAGGGAGCGCCGGGCGGCGAGGCTGCTGAGGTCGCACTCGACGGGGCACTCGGCGGAGCAGTGCGACTGCGAG------
---------GACCACGAGAGGTTCACGCTGCGGCTGCCGCAGCACGTGAGGGAGGAGGTGCTCAGCAGGTGCTGCGCGAG
GCCGT---------------------------------CTGTGGAGAGCCTGAGCGGAGGAGGGTGCGGTGTGGGAGAAA
GAGGAGGCAGCTTCCGCGACGC------CGGAGGAGCCAGCAGCGGCGAGCGGCGGTGGCAGACGCTCCTGGCCAGGACG
ATGCCATGGGCCCGA---------GCCGGGTCGACGCGGAAGGTGCGG--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S---
------------------------------S-S---------------------------SS---S----S---S-S---
---------SSSSS------------------------------------------------------------------
-----------------------------------S--SSSSS-SSSS-----------S------------S-------
-------S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS---------------------S----------------S------------------------
---------S--------S-----------S------------------------------------------S------
----------S---SSSS------------------------------------------S-------------------
--------------SSSSS------------------------------------------------------S--S-SS
SSSS----------------------------S-------------------------------------S---------
-----------------------------------------------------S-----------------S--------
---SSSSSSSS--------------------------------S---S--------------------------------
----SSS------------------------------------------SS--S--S--------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------SSS---------------------------------------------------------
--------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
----------------------------------S---------------------------------------------
-------------------------------------S------------------------------------------
------S-----------------------------------S-------------------------------------
----------------------------------------------S--S-----------------------------S
--------------------------------------------------------------------------------
------------------------------------S-------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
----------------------------------SSSSSSS---------------------------------------
------------------------------------------S----SS---------S---SS----------------
-----------------SSS-------SSS-S-SSS-SS---S-------------S------------SS---------
------------------------------------S-------------------------------------------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S-----------------------S--------------------------S-
---------SSSSSSSSS------------------------------------------------------S-------
-------------SSSSSSSS-----------------------------------------------------------
------------------------------------------S-------S---------------------S-------
----SSSSSS-----------------------S-------------SS---------------------SSS-------
--------S----------------------------------------------------SS------------S----
S------------------------------S---------------S------S-------------------------
---S-------------------------------------------------------------------------S--
-------------------------SSSSSSS-----------------------------------SSSSSS-------
-----------------S------------------------S-S--------SSSSS
>forward_396
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TTGTGGTGCTACCGGTGTAC----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------
>reverse_2363
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------ATTTGCGTGTGCTCCTGTGA------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------
