>input_sequence_59458
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------------------------------------------------------------------------------CT
ATAA--ATAAGTAACTAACCCAGCGCTTCCGATGATCACACTCACACTCACCTCATCTATCTTGCTTCTTCCACTGTAGC
TAGCCATCTAGCATCACCTCGCCATGGGTGCTACCAAGCTGGTCGTGTCCGCTGCCCTCCTCGTCCTTCTAAGCATAGGG
CTGTCAAGCGCCATTAGGGTAGTGAACCACGCCGCCACCGCCGATGGTGGAGGCAGCGGGGGCGGAGGCGGCAGCGGGAC
CGGCACCAGCCAGGCCTCTGGCTACGGGTCCGGACACGGGACGTCCGAGGCGTACGACAAGAACAGCTACGTCTACGGCT
CTGGAGGAGGCCGCGGCGGTGGCAGCTGGGAAGGCAGAGAGCAGGCCGCGGCTGGTTACGGAGCTGGCGGCGCGTCCGGC
TCGGGCCACGGCGACTCGAGTAACACAGACACCGACGGTTTGTCTACGAACGCGAATGGACAAGGCGGCGGTGGTGGTTC
TGGAGGGAGCGCCGGGAAGGGCAGCGGCTCCGGCTCCGGCGATGGAAGCGGGTCAGGGATAGCTGATAGCTATGGACCAG
ACGGTTCGAGCTACGCCAACAGCGGAGGGGGCGGAGGTGGCGACGCCGGCGGTAGCGACGATGGGTTTGCCAGTGGTTCT
GGAGGTGGATCGGGGAGCAGCAGCGGTGAATCAACACCTTAATTAGCTA-GAG-----CTCATTTCATTTGGCTCCAAAT
AACACGGCTGGCCAGCTAGCTCTGGCCACGGCCTACTGTTCTTCCATTATGTCTAG----TGTGTCAACGTGTG-----A
CACGTATTGTATGTTTTTTGGATTGTTTAAGATGTACTCCCTCCGTCCGAAGAAACTTGTCCTAAACTTATCCCTCAAAT
GGATGTATCTAGCACTAAATTGGTGTTATACATTCATTTGAGGGACAAACTTTTTCGAACGGAGAAGTAGTAATATTTGG
ATTTTCTAGCACTAAGAAGCCAGGCCAATGGCCTTGTTTCTGAATAGCATAATGGTATTGCACTAGTGAACACACTCATA
GCAAACCCCATCGAGTCCCGAAAAACACTTACCCCAGATATTTGTGCAAAGAAACTGATACATGAGATGGTTGCAATTGG
AAACTCGATTTGGAATAATAGAAGTTCTAAATGAAAATA-----------------------------------------
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>chr6B_1_TraesCS6B01G102300
TCGGCGAAGACTTTGCCGAGTCCCCGGCGGCTAGTGCTCGGCAAAGTCAACTTTGCCGGCAGGTTTTGGGCTAAGTACCC
TTAGCCGAGAACTATACTCGACAAACTCTATGCCGAGTGTGAAACAACTTTCGCTGAGTTTTTTCAGTACTCGGCAAAAT
CGGAAATTCAGTTAGCGCATGAGCTACC-ATGAATCTTAACAACTGAAAGAAGCTCCTTAACTATTACTGGAGGTTGTTC
TAAAGAAAAACTATTGTCAGAGGCCCTCTAAATAAATGAAATTGTATGTGGCTAGGTCTCAGTCGACTGACTTAACTAAG
TCTCAGTCAAGTGACATAATATGTGAGAAGAAAAAGAAAAACTGAAAATGTTTTTTTACGGATCTCCATGCAAAATCAAA
GAAAGATAGCATCAATTGAGACATAACAAAGTCTCAGTCGACTGAGATTTAGTAAAACTGAATGTTATTAGAGGCGAGAG
GGGAGATGCGGTGGATGGGAAGGGGGTCCTAGGGCGGGCTGCGTCTATGGTTTTGTGCCCGCGATGAAGTCGCCCTAGGA
CTACGCAGGGCCGGCGGG-----GGTGGTGGCCAGGTTTATGTCTGCGAGCTGCTCTTTGAAGATTGTTAGGATATAATT
TCATGTCTCGGCT---------GCATTGCTTCCAACTCCAATCGAATTAATCTTCACTTGTTTTCTATGTTTTTTTCAGC
GGTAAGAATGAATCTTCACTTGTTTTTGCAAGTGAAACGCTGGTTGACCTTGGGTGCAGCCGTGCAGGTAATCGAGAAGC
CGACATGAAGATCGCACCGCCACACCGACTTCAATTTCCCCTGACAAAACTGATCACTGGAATATATAGTGTCAGACTAA
TCGCATCTGCACGCCAGTTTAAAAGATACGT---ATCAGCCCAGTAATTAAGAGAGCTG--TCAACAAAATCTTCCATCG
ATGCAAAATCTTCAGTGGCTAATACGTAATAATCACGCACCCTCGACGTG------------------TACTCCAGCGCT
ATAA--ATAAGTAACTAACCCAGCGCTTCCGATGATCACACTCACACTCACCTCATCTATCTTGCTTCTTCCACTGTAGC
TAGCCATCTAGCATCACCTCGCCATGGGTGCTACCAAGCTGGTCGTGTCCGCTGCCCTCCTCGTCCTTCTAAGCATAGGG
CTGTCAAGCGCCATTAGGGTAGTGAACCACGCCGCCACCGCCGATGGTGGAGGCAGCGGGGGCGGAGGCGGCAGCGGGAC
CGGCACCAGCCAGGCCTCTGGCTACGGGTCCGGACACGGGACGTCCGAGGCGTACGACAAGAACAGCTACGTCTACGGCT
CTGGAGGAGGCCGCGGCGGTGGCAGCTGGGAAGGCAGAGAGCAGGCCGCGGCTGGTTACGGAGCTGGCGGCGCGTCCGGC
TCGGGCCACGGCGACTCGAGTAACACAGACACCGACGGTTTGTCTACGAACGCGAATGGACAAGGCGGCGGTGGTGGTTC
TGGAGGGAGCGCCGGGAAGGGCAGCGGCTCCGGCTCCGGCGATGGAAGCGGGTCAGGGATAGCTGATAGCTATGGACCAG
ACGGTTCGAGCTACGCCAACAGCGGAGGGGGCGGAGGTGGCGACGCCGGCGGTAGCGACGATGGGTTTGCCAGTGGTTCT
GGAGGTGGATCGGGGAGCAGCAGCGGTGAATCAACACCTTAATTAGCTA-GAG-----CTCATTTCATTTGGCTCCAAAT
AACACGGCTGGCCAGCTAGCTCTGGCCACGGCCTACTGTTCTTCCATTATGTCTAG----TGTGTCAACGTGTG-----A
CACGTATTGTATGTTTTTTGGATTGTTTAAGATGTACTCCCTCCGTCCGAAGAAACTTGTCCTAAACTTATCCCTCAAAT
GGATGTATCTAGCACTAAATTGGTGTTATACATTCATTTGAGGGACAAACTTTTTCGAACGGAGAAGTAGTAATATTTGG
ATTTTCTAGCACTAAGAAGCCAGGCCAATGGCCTTGTTTCTGAATAGCATAATGGTATTGCACTAGTGAACACACTCATA
GCAAACCCCATCGAGTCCCGAAAAACACTTACCCCAGATATTTGTGCAAAGAAACTGATACATGAGATGGTTGCAATTGG
AAACTCGATTTGGAATAATAGAAGTTCTAAATGAAAATAATAAACAGAAATGATTTTTCGTCCAACATGACTGGGATTCA
TTCAGCTCATACAAGCCCTGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCCGACATGTTTCATATACCCTTTATCCCTCTGCATATTCCCATCAAAAATCATATTATCT
TTAACACCGCTAGCATTAGGAAGTGTTTGTATTTTTTTTAAAGATCTCTTCCATGGTATAGGTAAGTCCTCATTTTAAGT
TGAGCAAGGCTATGTACTTCTCTAACCATTCAATGCATGTTTTTAAGGAAGGTATTTGGCCAAAAATAATGCATATGACG
CCTCTAAACAATTTGGGCCCCTGGATGGAAGATTATAAAACCTGCTCTTAGAACTTCCTTCTAGTGAAAAAACATTTTTT
TTTGCGGGGATAGTGAAAAAACATTAACCTGAGCATCAGATAAACTAGATAATTCCCCCGCGCGTTGCTGCGGGACTTTG
TTGCAATAATTTTGGGGAAATTCTATTGAGCAAAAAGTAACAAATTTATTTTACTTGATTAATTGTTAGATACTACTACA
TAACAGGACGATAAATATCATAATATGTGGCTAATTTTTGCTGGAGTTGTCGACGCTTGTGCCTTTTTTCTCGTGACCAA
ATTGTACATGTGGGATTCCTTTCTTGATGTACTGAAAGTAATCTGAGCCAGTAGGAGCAAATGCTTGGCATTTTAAAAT
>chrUn_56
-------------------------------------------------------CCGACAGGTTTTGGGCCGAGTACCC
TTAGCCGAGAACTATACTCGACAAACTCTATGCCGAGTGTGAAACAGCTTTCGTCGAGTTTTTTCAGTTCTCAGCAAAAT
CGGAAATTCAGGTAGCGCATGAGCTACCCATGAATCTTAACAACAGAAGGAAGCTCCTTAACTATCACTAGAGGTTGTTC
TAAAGAAAAAC------CAGAGGCCTTCTAGGGCGGCGTCTATGGTTTTGTGCCCGATGGAGTC----------------
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--GAGATGCGGTGGATGGGAAGGGGGTCCTAGGGGG----GCGTCTATGGTTTTGTGCCCG--ATGGAGTCGCCCTAGGA
CTACGCAGGGCCGGCGGGCCGGGGGTGGTGGCCAGGTTTGTGTCTGCGAGCTGCTCTTTGAAGATTGTTAGGATATAATT
TCATGTCTCGGCTTTGCGTGCTGCATTGGTTCCAACTCCAAT-GAATTAATCTTCACTTATTTTTGTGTTTTTTTTCAGC
GATAAGAATGAATATTCACTTGTTTTTGCAAGTG--ACGCTGGTTGACCTTGGGTGCAGCCGTGCAGGTAATCGAGAAGC
CGACATCAAGATCGCATCGCCACACCGACTTCAATTTCCCCTGACAAAGCTGACCAGTGAAATATATAGTGTCAGACTAA
TCGCATCTGCACGCCAGTTTAAAAGATACTACGTATCAGCCGGGTAATTAAGAGAGCTG--TCAACAAAATCTTCCATCG
ATGCAATTTTTTTTCCTAATC-TACGTAATAATCAAGCACCCTCGACATG------------------TACTCCAGCGCT
ATAAATATAAGTAAATAGCCCAG-GCTTCCGATCATCACACTCAC--TCACCCCATCTAGCTTGTGTCTTCCATTGTAGC
TAGCCATCTAGCATCACCTCGCCATGGGTGCTACCAAGCTGGTCGTGTCCGCTGCCCTCCTCGTCCTTCTAAGCATAGGG
CTGTCCAGCGCCATTAGGGTAGTGAACCACGCCGCCACCGCCGATGGTCAAGGCAGCGGGGGCGGAGGCGGCAGCGGGAC
TGGCACCAGCCAGGCCTCTGGCCACGGGTCCGGCCACGGGACGTCCGAGGCGTACGACAAGAACAGCTACGTCTACGGCT
CCGGAGGAGGCCGCGGCGGCGGCAGCTGGGAAGGCAGAGAGGAGCCCGCGGCTGGTTACGGAACTGGCGGCGCATCCGGC
TCGGGCCACGGCGACTCGAGTAACACGGACACCGGCGGTTTGTCCACAAACGCGAATGGCCAAGGCGGCGGTGCTGGTTC
TGGAGGGAGCGCCGGGAAGGGCAGCGGCTCCGGCTCCGGCGACGGAAGCGGGTCAGGGATAGCTGATAGCTATGGACCAG
ACGGTTCGAGCTACGCGAACAGCGGAGGGGGAGGAGGTGGCGACGCCGGCGGTAGCGACGATGGGTTTGCCAGTGGTTCT
GGAGGTGGATCAGGGAACAGCAGCGGTGAATCAACACCTTAATTTGCTA-GAGGCGACCTCATTTCATTTGGCTCCAAAT
AATACGGCTGGCCAGCTAGCTCTGGCCACTGCCTACTGTTGTTCTATTATGTCTAG----CGTGTCAACGTGTTACCCTA
CACGTACTGAATGTTTCTTAGAATGTTTAAGCTGTA--------------------------------------------
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>chrUn_807
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---------------------ACAGCGACTTCAATTCCACCTGACAAGGCTAATCACTGAAAG--ATAGTGTCAGACTAA
TCGCATTTGGATGC------AAAAGATACGC---ATCAGCCCAGTAATTAAGAGGCCCAACTCACCAAAATCTTCCAT--
------AATCTTCAGTGGGTAA----TAATAATCACGCACGCTCAACATGCATGCTAATTTAAAACTATAACCAAGCGCT
ATAA--ATAACCACGTTACTCA---CTTCCGACCAT--CACTCAC--TTCATCAAGCTTGCTTGCTTCTTCCACTGGAGT
G-GCAATCTAGCATCGCCTCGCCATGGCTTCCACCAAGCTGATCCTGTCCGCTGCCCTCGTCGTCCTCCTAAGCGTGGGG
CTGTCCAGCGCCATTAGGGTAGTGAACCACGCCGCCACCGCCGACGGCCAAGGCAGTGGAGGAGGAGGAGGCGGCGGGAC
CGGCAACAGCCAGGCCTCCGGCTATGGGTCCGGCGATGGCACCGCCGAGGCGTACGACCAGGACAACTACGCCTATGGCT
CCGGAGGCGGTGGCGGCCGTGGCCGTTGGCGAGGCCGCGACAAGTCCGCGGCTGGTTCCGGAGCTGGCGGCGCGTCCGGC
TCGGGCCACGGAGACTCGAGTACCACGGACGCCGGCGGGTCTTCAACCAACGCGAATGGCCAAGGAGGCGGTGGTGGCGC
TGGGGGGAGCGATGGCAATGGCAGCGGCTCCGGCTACGGCGATGGAAGCGGGTCAGGGGTAGGTGAGAACTATGCACCGT
ATGGTTCGAGCTACGCGAGCAGCGGAGGGGGCGGGGGTGGCGACGGTGGCGGCCGCAACGGTGGGTTTGCCGCTGGTTCT
GGAGGTGGATCAGGGAGCAGCAGCGGTGAATCAACCCCGTAACTAGAGGCGAG-----CTCATTTCACTTGGCTCCAAAT
AATACGGCTGGCCAGCTAGCTCTGGCCACTGCCTAATGTTGTTCCATTATGTCTAGTGCATGTGTCAATGTGTG-----A
CACGTATTGTATGTTTCTTGG-----------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S------------SS-------
----------------------------------------------S------SS-------------S---S-------
-----------S--------------------------------S---S----------------S---S----------
-----------SSSSSS--------S----SSSSSSS-SSSS--SS-S--SSSSS-SSSS----SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS--------------------------------S-SSSS---------------------SS---S-------------
---------------------------------------S----------------------------------------
----------------------------S-------------S----------------S----SSSSS-----------
-S-----------S--------------------SS--------------------------------------------
------S---------S-------------------------------S----------S--------------------
------------------------------S-------------------------------------------------
------------------S----------------------------S--------------------------------
--------------S--------S---------S-----------SS-----S------S--------------------
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-----S------------------------------------------SS------------------------------
---------------------------------S----------------------------------------------
-S---------------------------------------S--S-----------------------------------
--------------------------S-------S---------S--S-----------S--------------------
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----------------S---------------------------------------------------------------
-----------S--------------------------------------------------------------------
--S--------------------------S----------S---------------------------------------
----------------S-----S--------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_306
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----------------------------------------------TGTGGCTAGGTCTCAGTCGA--------------
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>reverse_1872
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-------------------------------ATGTACTCCCTCCGTCCGAA-----------------------------
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>forward_1692
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------------------------------------------------------------------------GTGGTTCT
GGAGGTGGATCG--------------------------------------------------------------------
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>reverse_3089
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------------------------------------------------GTCGACGCTTGTGCCTTTTT------------
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