>input_sequence_59452
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-------------------CCATAAATAGCCCCGCTCCAACGCCATCTCCACTTCGCCAACCCCCCCTCTCCGCCTCTGC
CCACCACCTCCGTTACTCCTC----CCTCGCCGCTCCACTCCTCTCGCCGCCGGCCGTCGGGAAGCTCCATCAGCTCGAT
CCAGCGGCTTGACAGCCATGTCGGGGAGCTACTCCTCGCGGCTCCGCGCCGGGGGCGGCGGCGGGGGCCTGGGCGCGACG
ACGGTGCTGGCGGCCAAGGTGGCGTTCGCGTCGGCCGCGCTGGCCGCGGCCGCGTGCATGGTGCCGCAGCTCGTGTCCGG
CGCCGACGCCTTCCTCTGGAAGCTCTACCTCTTCGTCACCGTGCACGTCATCATCTTCGTCATCTGGAAGCTCTCCGACA
GCAAGCACTTCCACGCCGC---GCAGCAGCAGCACAAGGACCCCTGGGCGCCGTCGCCGCTCC---ACCACCCCGCTGCC
GCGGCGCCCCCGCTGCTGACGGAGCCGGCCGTGCTGGCCGCCGTCAAGCGCAGGGTGGACTTCGCGCCCGCCCCCGCCGT
CTTCTCCGCCGCGCCGGCCGAGGTGTACCGCGTGCCCCCGCCCGTGTCGCGCTGGCACGAGGCTGCCGACTCGGCGGTGG
TCGAGGAGGTCGTCTCCCCTGTCTCATTCGGCGGCGAGTCGTGCGTCACCACGGAGTCCGATGAGGACGCTTCCTCCGCC
GCCGTGTCAGCCTACATCGCCACCGCCGACGAGGGCAGGAGCGTCTCGCCTGGACTGGCGCC------------CGCACG
GGAACACGCGGTCCTCGAGCGTGGGGTCTCCCTGCCCCCTCGCCGGGCTACCGCGCCCACGGACGAACACTTCGACGGCG
CCGACGACAACCACGACGGCGGCGGCGG---------CGACGACGACCTGGACGCGACGTGGAACGCCATCATGCAGAAG
ACGCGCCCGGCGACGGCGCCGGCCGCATCCACCACCTCCCCTCCAGCCCCACGCTCGTCGCCTCCCCGGCCAACCCCATC
GCCGCGGCCGCGAGCCCGGGAGCCTTCCGTCGGCGCGGCGGAGCTGAGCAAGCGGTCAGAGGATTTCATCAAGAAGATCC
ACAACTCCTTCGGCCGGCACCAATAATCCCACCCACCCACCCACCATCATCCCCAAAATCCCAAGCCAATCCAA------
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>chr2A_1_TraesCS2A01G554900
CTTTTACGTTTTGGGGGCGAGCTCGGCTTGGGCTTGGCTTTTATAGGGCCGGGCTTGTGAAAACCTGGCTCGGAAAATAC
CCGTCTAATTTGAAGATCTACCTAGGTAAGTCTTGGGCTCAACCATATTTTCTAGAAAATACCCGTCTTATTTTCTAGAT
TTTTGTGGTCTATTTGGTACATAGGAAAAAAATATAAAAAAAGAGTATGTTGGTTGGAAGTTTTCTTTTGGCGAAAATGA
TCATCCATTTGGTTTAAACGAATGGAGTAGAGGAAAAACATAGGATTTTTTTTCTTTATTCGCATTTGAAACAATAACAC
ATATGAATTTTACTTTGCACTTGGACCTCTTCTTAGAA--ATACTACGCACGGAAAAAAAGACTGGTATCTTTAGTTTCA
GAG-ATAACATTCTATTTGTAGATTCATGTGTTTTGCCTTTGGTTTGACTATATTTTGCCTTTGGTTTGACTA------T
ATTTATTTGGAAAAACATAGGATTTTTGAAAT------------------------------------------------
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------------------------------------------------------------GTACCGGACCTTCTGAAATG
CCAA---TCCAAGATCCAATCATGCATGGGAACTGGATGGGCGCGTGCCATACACGGCAGTGCACAACTGCA--------
-TATTGCCGACGATATTTTGCTGATCTGATTTGATCTATTTGGTGGTGGTGTGGTAGGGTTTCCAGGG---AAGGGAATC
GACGCTGTGTAATCCCGCAGAAATGGAAACATATCGCCCGTCAGCGCACAACCACGAATTTCTTCGGCAGTAACCGCATT
TTCTCCCGAGTGTACGCGGCAAGACATCTGAATCCGAAGCTCATCCGTTCAAAGTGTTAATTTCTGCCCTTGTTCCAAAA
TTAATCAATTAATTCCGGATGATCCCG------ACCTTATCTCGACGTCAACCTCCAAATTACGGGTGTAATTTTCTTCC
AAATTACCCCTGATCGCGATCGCATTCCCGGTGAAACTTCCAAATTTGCTCGCTAAGTTAATTTTTTCCAAAAAAAAATA
TGGTCGCCGCCCTC-CCCACCATAAATAGCCCCGCTCCAACGCCATCTCCACTTCGCCAACCCCCCCTCTCCGCCTCTGC
CCACCACCTCCGTTACTCCTC----CCTCGCCGCTCCACTCCTCTCGCCGCCGGCCGTCGGGAAGCTCCATCAGCTCGAT
CCAGCGGCTTGACAGCCATGTCGGGGAGCTACTCCTCGCGGCTCCGCGCCGGGGGCGGCGGCGGGGGCCTGGGCGCGACG
ACGGTGCTGGCGGCCAAGGTGGCGTTCGCGTCGGCCGCGCTGGCCGCGGCCGCGTGCATGGTGCCGCAGCTCGTGTCCGG
CGCCGACGCCTTCCTCTGGAAGCTCTACCTCTTCGTCACCGTGCACGTCATCATCTTCGTCATCTGGAAGCTCTCCGACA
GCAAGCACTTCCACGCCGC---GCAGCAGCAGCACAAGGACCCCTGGGCGCCGTCGCCGCTCC---ACCACCCCGCTGCC
GCGGCGCCCCCGCTGCTGACGGAGCCGGCCGTGCTGGCCGCCGTCAAGCGCAGGGTGGACTTCGCGCCCGCCCCCGCCGT
CTTCTCCGCCGCGCCGGCCGAGGTGTACCGCGTGCCCCCGCCCGTGTCGCGCTGGCACGAGGCTGCCGACTCGGCGGTGG
TCGAGGAGGTCGTCTCCCCTGTCTCATTCGGCGGCGAGTCGTGCGTCACCACGGAGTCCGATGAGGACGCTTCCTCCGCC
GCCGTGTCAGCCTACATCGCCACCGCCGACGAGGGCAGGAGCGTCTCGCCTGGACTGGCGCC------------CGCACG
GGAACACGCGGTCCTCGAGCGTGGGGTCTCCCTGCCCCCTCGCCGGGCTACCGCGCCCACGGACGAACACTTCGACGGCG
CCGACGACAACCACGACGGCGGCGGCGG---------CGACGACGACCTGGACGCGACGTGGAACGCCATCATGCAGAAG
ACGCGCCCGGCGACGGCGCCGGCCGCATCCACCACCTCCCCTCCAGCCCCACGCTCGTCGCCTCCCCGGCCAACCCCATC
GCCGCGGCCGCGAGCCCGGGAGCCTTCCGTCGGCGCGGCGGAGCTGAGCAAGCGGTCAGAGGATTTCATCAAGAAGATCC
ACAACTCCTTCGGCCGGCACCAATAATCCCACCCACCCACCCACCATCATCCCCAAAATCCCAAGCCAATCCAAATCAAA
A-ATTTCTCGGCTGTGTAAAGATCAT---ATCCCCTTAAATTAGTCT---------TTCTTCTTCCCTTCCTGGTGTGCC
CTGTACCGATCGCCGGAGCAGAGGCGAGGCGAGCTCGTCAGAACCGCCACATTTAGGTAACTAACCGAATCCAGAGCTCG
ATCTCGATCTGCTTCCCCGTTTCAATGGCGATTTTGTGAGTTGCTGCCGAGCCGATGAAAATTCAAAAGT-AAAAAAGTT
GGTTGCTTGCTTGCTTGATTGCCCGGACTGCTTGTTGGCCGGAGTGAGTTGTCGCTTGCCACTTTGACGCAAAGGGATGG
TCGGCTCGTGCTCTGGCAGCCCGGTCCACCTCTTTCCCTTTCGGTGCCATTAGGATCCAACACACGATCCATTGCTTACC
ACTTAAGTTGGACC---------CTTCTACTTCTTCTTCTTCCTCCGTCCATCCAACAATGATAGG------------AA
CTAGCTAGAGTC-AAAATTGTTGGTGAATTTCTGAAATTTCTGTCA---GAATCTTCAGTCGGAAAGTGTCATGCCTATG
----TTTGTTGTGAAAGTTACATGTGTGTGT------------------TTGTACAGTGACATGTAGTATGGCCAAGTGG
CAGCATCCA----CAAATTGACAAGTTTGTTTCCATGCTTGTTGGAATTTGCAGCCTGTGAAGGTTCTGGATGTTCTGGA
TGGATGGTGGTGCTGTGGGACTAGCAGTGTGGCTGGCTGGAGATGATCCTGACCTTTTAATGTGCTGAAATGATGGTTTG
G---------TTGGTGCATGCTTGGTTGTTAGGTTATCTCTTTGTTTTTTGGGTGGTTCTATTCCCCTCTGGTGGTGGCC
TGGACCTGCATCTGTTCTTGGTTGCTTTCCATACTACA----GCTCTTATACAGATTATCACAACAGTGCTTTTTTTATG
ACATCACAACAGTGCAAATTATGGTGTTAATTCATAATCCTGGGGGGCAGTGGGTGTGTG--TG--CTTGTGATTATGAA
CTGTTGCTGCCACATGGTGTGCCTCTGTATGTGTGT
>chr2B_83
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--GTCTAATTTGAAGATTTATCTAGGTAAGGCTTGGGCTCAACCATATGTAGCTCT-----------TTATGTTCTAGAT
TTATGTTGTCTATCTGGAACATAGGAAATATA---AAAAAGTGAGTACATTGGTTGGAAGTTTCCTTTTCGTGACACTGT
TCAACGATTTGGTTTAAACGAATGGAGTAGAGGAGAAACAGAGTGATTTTTTTCATTGTTCGTGGTTGAAAGGAAAA-AC
ACATGAATTTTACTTTCCACTTGAACCTCTTCTTAGAATTATACTATGCACGGAAAACAAGTTTGATGTCTTTA------
----------TCCTAATTATATTTTCACGTGGTTCACCTTTAATTTGACTACATTTATTAGAATTCTTGTGTCTTTTCTT
ATTTATGTGAAACAAACATGCAAATTTTCAAAAATCTTTTGTTTTTCAG-CCCTTTATTCAGTACATGCATTCCTTTC-T
ATTACTATATTTTTCG-TATTCCAATGTTTCCATGAACCAATTAAACCATTTAAAAAGTTAGCATAGATGTGAGCATGGG
TTTCCACCCCCACTGATTGTT------AACTTGAATTCAAATGCATTTCTTGTTGCAGTCGCAAACTTCCGCAAAGTTTT
AAATTTACGTCGCGCTATGATCAACTTGCGTGCAAAATCATAAAAAATGGAAGAAAAAATTATAACACAACAATGTCACT
CATGAACAACATTTCTTATAATAACGCCATATCAAGGTGATACAAGCATCACAACTGACATCCGCGTTGTTAAGATACAC
ACACCTGCCACACATGCACAAATGAAATACGTAGCTAAAGTGGACTAAAATCACTTAATGGTTGTCGAGGCTCTTAAAAA
GAAGTGTCTCCACAACCTTTGACAGTTTA---------------------------------------------------
--------------------TTTTTTTTAGAAGTTTTTCTTTGAACGCAGTACAGACACAAATCCTAATACATAGACACA
TACACTCAGCTCTATGAATGCATGAATGCAAAATCTATCCCTATGAACATCTACGAGTGATTGAGCCGACACATCATCTT
GGGATTGATGTCGCCACAAACGCCTTCGTCGTCGACATATCCATCTTCTCCCAGTGAATACACATCATCGGAAGCTCTGA
ACTGAATCCAAAAAAAAAGTGTGCAACAATGTCAAGTCCAAGACTTGAACCTTGGTCGGTTGGGGACAACACTGTTTTCC
TAAATATCCTACCACACGCTGGTTCACA----------------------------------------------------
---------------------------------------------------------AATTTTTATCAGTTTGTCTAATT
CACGTCTAGATGTTTTTTAAGGA---------------------------------------------------------
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--------------------------------TGTGAAAGTGCCTC-------------------------CCTGAAATG
CCAATTTTCCAAGATCCAATCATGCATGGGAATCGGATGGGCGCGTGCCATACACGGCAGTGCACAACTGCA--------
-TATCGCCGATGACATTTTCCTGATCTGATTTGATCTCTCTGGTGTTGTTGTGGTTGAGTTTCCAGTGCACAA-----CC
TACGCTATGTAATCTCGCAGAAATGGAAACATATC------------------ACAAATTCTTTTTACATTAGTCACAAT
TTCTCCCAAATGTATCCGGCAAGACATCTTAATCCGAAGCTCTTCCGGTCAAAGTGCTCATTTCTGGCCTTCTTCCAAAA
TTAACCAATTAATTCTGGATGATCGCAAACCTTATCTCATCTGAATGTGAACCACCAAATTACCGGAGTAATTTTCTTCC
AAACTACCCATGATCGCGATCGCATTTTCGGTAAAACTTCCAAAATTGCTCGCTAAGTTAATTTTTTCCAAAAGAA---A
TGGACGCCGCCCCG-CCCCCCATAAATAGCCCCGCCCCAACGCCATCTCCACCTCGCCAACCCCCCCTCTCCG-CTCTGC
CCACCACCTCCCCCGCTCCATTACTCCTCGCCGCTCACTCCTCGTCGGCGC-------C------------CGGTTAGAT
CCAGCGGATAA----CCATGTCGGGAAGCTACTCCTCGCGTCTCCGCGCCGGGGGCGGCGGCGGGGGCCTGGGCGCGACG
ACCGTGCTGGCGGCCAAGGTGGCGTTCGCGTCGGCCGCGCTGGCCGCGGCCGCCTGCATGGTGCCGCAGCTCGTGTCCGG
CGCCGACGCCTTCCTCTGGAAGCTCTACCTCTTCGTCACCGTGCACGTCATCATCTTCGTCATCTGGAAGCTCTCCGACA
GCAAGCACTTCCACGCCGC---CCAGCAGCAGCACAAGGACCCCTGGGCCCCGTCGCCGCTCC---ACCACCCCGCCGCC
GCGGCGCCCCCGCTCATGACGGAGCAGGCTGTGCTGACCGCCGTCAGGCGCAAGGTGGAGTTCGCGCCCGCGCCCGCCGT
CGTCTCCGCCGCGCCCGCCGAGGTGTACCGCGTGCCCCCGCCCGTGTCGCCGTGGCACGAGGCTGCCGACTCGGCGGTGG
TTGAGGAGGTCGTGTCCCCTGTCTCGTGCGGCGGGGAGTCGTGCGTCACCACGGAGTCTGAGGAGGACGCCTCCTCCGCC
GCCGCGTCGGCCTACATCGCCACCGCCGACGCGAGCAGGAGCGTCTCGC------------C------------CGCACG
GGAGCGCGCGGTCCTCGAGCGCGGCATCTCCCTTCCCCCTCGCAAGGCCACCGCGCCCACGGACCAACACTTCGACGGAG
CCGATAACAACCACGA------CGGCGGCGGCGGCGACGACGACGACCTGGACGCGACGTGGAACGCCATCATGCAGAAG
ACGCGTCCGGCGACGGCGCCGGCCGCATCCACCACCTCCCCTCCAGCCCCGCGCTCGTCGCCTCCCCGGCCATCCCCATC
GCCGCGGCCGCGAGCCCGGGAGCCGTCCGTCGGCGCGGCGGAGCTGAGCAAGCGGTCAGAGGATTTCATCAAGAAGATCC
ACAACTCCTTCGGCCGGCACCAATGATCGCACCCACG----CACCTTCAACCCAAAAATCCCATACCAATCCAAATCCAA
AGTTTTCTCGGTTGTGTAAAGATCATCATATCCCCTTAAATTAGTTCTCCTTCTCCTTCTCCTTCCCTTCTTGGTGTGCC
CTGTGCCGGTCGCCGGAGCAGAGCAGAGGCGAGCTCGTCAGAACCGCCACATTTAGGTAACCAACGAAATCCAGAGCTCG
ATCCCGATCTGCTTCCCCGTTTCAATGGCGATTTTGTGAGTTGCTGCCGAGCCGATGAAAATTCAAAAGTAAAAAAAGTT
GGTTGCTTGCTTGATTGCT----CGGACTGCTTGTTGGCCGGAGTGAGTTGTCGCTTGCCGCTTTGGCCCAAAAGAATGG
TCGGCTCGTGCTCTGGCAGCCCGGTCCACCTCTTTCCCTTTCGGCGCCATTAGGATCCAACACACGATCCGTTGCTTACC
ACTTAAGTTGGATCCTTCTACTTCTTC---------TTCTTCCTCTATCCATCCAAGAGAGAGAGATAGATAGATACTA-
CTAGCTAGAGTCAAAAATTGTTGGTGAATTTCAT-----------------------------AAAGAGTTATGCC-ATG
----TTAGTTGTGAAAGTTACATGTGTGTGTGTGTGTGTG--------TTTGTACAGTGACATGTAGTATGGCCAAGTGG
CAGCATCCACCCCCAAATTGACAAGTTTGTTTCCATGCTTGTTGGAATTTGCAGCCTGTGAAGGTTCTGGATGGTCTTGA
TGGAGGCTGGTGCTGTGGGACTAGCAGTGTGGCTGGCTGGGGGTGATCCTGACCTCTTAATGTGCTGAAATGATGGTTTG
GGTTGGTGGCTTGGTGCATACCTGGTTGTTAATGATTAATA-----TTTTGGGTGGTTCTATTCCCCTTTGGTGG---CC
TGGACCTGCATTTGTTCTTGGTTGCTTTCCATACTACATACAGCTCTTGTACTGATTATCAGTTATTACT----------
-----ACAATAGTGCTAATTATGGTGCTAATACTCCTGT--------CAGTGGGTGTGCG--TGCGCTTGTGATTACAAA
CTGTTGGTGCCCCATGGTGTGCCTCTGTATGTATGT
>chr2D_147
--------------------------------------------------------------------------------
------------------------------------------------------------------CTTATTTTCTAGAT
TTTTGTGGTCTATTTGGTACAC----AATAAA---AAAAAAAGAGTATGTTGGTTGGAAGTTTTCTTTTGGCGGCAATGA
TCATCCCTTTGGTTTAAAGGAGTGAAGTACAGGGAACACGGAA-GAATTTCTTCTTTATTCGCATTTGAAAGGAAAAAAC
ACAAGAATTTTACTTTCCACTTGGACATCTTCTTAGAA--ATACTACGCACGGAAAACAAGACTGGTGTCTTTAGTTTCA
GAAAATAACATGCTAATTGTAGATTCATGTGGTTTGCCTTCGATTGGACTGTATTTATTAGAATTCTTGTGTCTTCTCTT
ATTTATGTGAAACAAACATGCAAATTTAAAAAAAACATTTGTTTTTCAGTCGTTTTATGCGATACATGCAATCCTTTTGT
ACTACTATGTTTTTCTATATTCAAATGTTTTCGTGAACCAATTAAACCATTTCAAAA-TTAGCATACATGTGAGCACAGA
CTTGCACAGGGTACAAATTGGTTGTTAAGCTTATATTCAAATGGATTTTTTTGTTTTTTTGGAAACTTTCGATCTATTCA
TTTTCAATCATGGCAGTACAACGAA-------------CACAAAAAATGATAGAAAGTACATTCAAATCCGTAGACCACG
TAACGATGACAACAAGCACTAAAGCGAGCCGAAGACGCACCGCCGACCTCGTCCTCCCTTGCCAGAGCCGGGCCGAACTA
GTTGTAGTAGACAGTCGGTTGATGCCTTACGGACTCCCTACAGCCGCCGCCTCTTCCTCCTCCTAAAAAAAGCAGCTAGG
GTTTCTGCCTCTCGCCGGCTTCGACGCAGGTCCGCCTCGTCTCCGGTGGCCCTAGGGCCATCGAGGCGCGGTGGATCTTG
CCAAGGGCCGGCGAGAGGGCTTCTTTTTAGTCGTTTCTTTCTACTTTGTTAGGGTTTGTGTTCTGCTCAGGAAGACGAAA
CGGCGGCGGCTTTCTGAAGATGGAATAAAGGTCTCCCTGCCTAGCCCCCGTTCCAGTGGTGCGTCTAGCATCGTTGGTGG
GCGTGTGGAGGTGTGTCTCCGGCGGATCTATCTTTGGTGGATTTGCTCGGATCTCGTTGGTGTTCGTCTACGTTCGTGTG
TCTTCGGATTGGATCCTTCCGATCTATGTTATTCTTCATCTGCGGCGATTGCTGTTCTGGTGCGCTGGTCCTATGGGGCC
TTAGCACGACGACTTCCCGACTGTCTACTACAACAAGTTGTGCCCGACTCTGACGATGGAGGGGCGATGACGGCGGCGCG
CCTTCGGCTCGCTTCAATGCTTGTAGTCGTCGCTAGGTGGTCGACGGATCTGGATGTAATTTTTATTATTTTTGGTATTC
GTTGTACTGCCATGATTGAAGATGAATAGATCGGAAGATTTCCCGCAAAAAAGAAGAAGACAGATGGTCCGGATAAATGA
GAAAAACCAGACCCAATAATCATACATGGCACGATTAATTAAGGAAAACCGACGAAAACCCCACACACCCAACTAGCACT
CGAGAAAAACATCGTCCGAAATCCAATAGAGTTGTGAAAATGCCATTCCCAAAATGTACCGTACCGAACCTCCTGAAATG
CCAATTTTCCAAGATCCGATCATGCAAGGGAATTGGATGGGCGCGTGCCATAGACGGCAGTGCACAACTGCACATTCATA
TTATTGCCAATGATATTTTCCCGATCTGATTTGATTTCTTTGGTGGTGTTGTGGTAGGTTTTCCAGGG---AA-----TC
GACGCTGTGCAGTCCCGCAGAAATGGAAACATATCGCCCGTCAGCACACAATCACGATTGTTTTTGACAG----------
-----------------------------TAACCCGAAGTTCTTCCGGTCAAAGTGCTCATTTCTGCCCTTGTTCCAAAA
TTAATCAATTAATTCTGGATGATCCCG------GTCTTATCCGAATGTGAACCACCAAATTACCGGAGTAATTTTCTTCC
AAACTACCCCTGATCGCGATCTCATTTCCGGTGAAACTTCCAAATTTGTTAACTTAGTTAATTTTTTCCAAAGAAA----
TGGACGCCGCTCTGCCCCCCCATAAATAGCCCCGCTCCAACGCCATCTCCACTCCGCCAA-CCCCCCTCTCCGGCTCTGC
CCACCACCTCCCTTACTCCTCG---CCGCGCCGCTCCACTCCTGTCCCCGCCGGCGTAC------------CAGCTCGAT
CCAGCGGCTAGCCAGCCATGTCGGGAAGCTACTCCTCGCGGCTCCGCGCCGGGGGCGGCGGCGGGGGCCTGGGCGCGACG
ACGGTGCTGGCGGCCAAGGTGGCGTTCGCGTCGGCCGCGCTGGCCGCCGCCGCCTGCATGGTGCCGCAGCTCGTGTCCGC
CGCCGACGCCTTCCTCTGGAAGCTCTACCTCTTCGTCACCGTGCACGTCATCATCTTCGTCATCTGGAAGCTCTCCGACA
GCAAGCACTTCCACGCCGCACAGCAGCAGCAGCACAAGGACCCCTGGGCACCGTCGCCTCTCCACCACCAACCTGCCGCC
GCGGCGCCTCTGCTCATGACGGAGCAGGCCGTGCTGGCCGCCGTCAAGCGTAGGGTGGACTTCGCGCCCGCCCCCGCCGT
CGTCTCCGCCGCGCCGGCCGAGGTGTACCGCGTGCCCCCGCCCGTGTCGCGCTGGCACGGGGGTGCCGACTCGGCGGTGG
TGGAGGAGGTCGTCTCCCCTGTCTCGTGCGGCGGCGAGTCGTGCGTCACCACGGAGTCCGAGGAGGACGCCTCCTCCGCC
GCCGCGTCGGCCCACATCGCCACCTCCGACGCGAGCAGGAGCGTCTCGC------------CGGTGCTGGCGCCCGCTCG
GGAACGCGCGGTCCTCGAGCGCGGGATCTCCCTGCCCCCTCGCAAGGCCACCGCGCCCACGGACGAACACTTCGACAGCG
CCGACAACAACCACGA------CGGCGG---------CGACGACGACCTGGACGCGACGTGGAACGCCATCATGCAGAAG
ACGCGTCCGGCGACGGCGCCGGCCTCAACCACCTCCTCCCCTCCGGCCCCGCGCTCGTCGCCACCGCCACCGACCCCTGC
GTCGCGGCCGAGGGCGCGCGAGCCATCCGTCGGCGCGGCGGAGCTGAGCAAGCGGTCGGAGGATTTCATCAAGAAGATCC
ACAACTCCTTCGGCCGGCACCAATGATCGCACCCAC----CCACCGTCAACCCAAAAATCCCAAACCAATCCAAATCGAA
A-TTTTCTCGGTTGTGTAAAGATCAT---ATCCCCTTAAATTAGTCT---------TTCTTCTTCCCTTCTTGGTGTGCC
CTGTGCCGGTCGCCGGAGCAGAGCAGAGGCGAGCTCGTCAGAAGCACCACATTTAGGTAACTAACCGAATCCAGAGCTCG
ATCTCGATCTGCTTCCCCGTTTTAATGGCGATTTTGTGAGTTGCT-----GCCGATGAAAATTCAAAAGTAAAAAAAGTT
GGTTGCTTGCTTGATTGCT----CGGACTGCTTGTTGGCCGGAGTGAGTTGTCGCTTGCCGCTTTGGCGCAAAGGGATGG
TCGGCTCGTGCTCTGGCAGCCCGGTCCACCTCTTTCCCTTTCGGTGCCATTAGGATCCAACACACGATCCATTGCTTACC
ACTTAAGTTGGACC---------CTTC---------TTCTTCCTCTATCCATTCAAGAGAGATGGATAGATT--------
CTAGCTAGAGTC-AAAATTGTTGGTGAATTTCTGAATTTCCTTTCTGATGAATCTTCAGTCAGAAAGGGTTATGTCTATG
CTGTTTTGTTGTGAAAGTTACATGTGTGTGT------------------TTGTACAGTGACATGTAGTATGGCCAAGTGG
CAGCATCCA----CAAATTGACAAGTTTGTTTCCATGCTTGTTGGAATTTGCAGCCTGTGAAGGTTCTGGATGTTC----
TGGAGGGTGGTGCTGTGGGACTAGCAGTGTGGCTGGCTGGAGATGATCCTGACCTCTTAATGTGCTGAAATGATGGTTTG
GGTTGGTGGCTTGGTGCATGCCTGCTTGTTAATGATTAATA-----TTTTGGGTGGTTCTATTCCCCTTTGGTGG---CC
TGGACCTGCATTTGTTCTTGGCTGCTTTCCATACTACA----GCTCTTGTACTGATTAT---------------------
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>chr3B_2506
TTT-----------------------------------------------------------------------------
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----------------------------------------------------GGATCCAACACACTATCCATTGCTTACC
ACTTAAGTTGGATC---------CTTC---------TTCTTCCTCTATCCATCCAAGAGAGGTAGATAGATAGATACTAA
GTAGCTAGAGTCAAAAATTGTTGGTGAATTTCTGAAACTCCTTTCA---GAATCTTCAGTCAAAAAGAGTTATGCATATG
----TTAGTTGTGAAAGTTACATGTGTGTGTGTGTGTGTG--------TTTCTCCAGTGACATGTAGTATGGCAAAGTGG
CAGCATCCA-CCCCAAATTGACAAGTTTGTTTCCATGCTTGTTGGAATTTCCAGCCTGTGAAGGTTCTGGATGGTGTTGA
TGGAGGCTGGTGTTGTGGGACTAGCAGTATGGCAGGTTGGAGATGATCCTGACCTCTTAATGTGCTGAAATGATGGTTTC
GGTCGGTGGCTTGGTGCATGCCTGGTTGTTAATGATTAATA-----TTTTGGGTGGTTCTATTCCCCTTTGGTGG---CC
TGGACCTGCCTTTTTTCTTTGTTGCTTTCCATACTACATACGGCTCTTATACTGATTATCAATTACTACT----------
-----ACAACAGTGCTAATCATGGTGCTAATACTCCTGC--------CAGTTGGTGTGTG--TG--CTTGTGATTACAAA
CTGTTGCTGCCACATGGTGTGCCTCTATATGT----
>chr3B_2506
TTT-----------------------------------------------------------------------------
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----------------------------------------------------GGATCCAACACACTATCCATTTCTTACC
ACTTAAGTTGGATC---------CTTC---------TTCTTCCTCTATCCATCCAAGATAGGTAGATAGATAGATACTAA
GTAGCTAGAGTCAAAAATTGTTGGTGAATTTCTGAAACTCCTTTCA---GAATCTTCAGTCAGAAAGAGTTATGCATATG
----TTAGTTGTGAAAGTTACATGTGTGTGTGTGTGTGTG--------TTTGTCCAGTGACATGTAGTATGGAAAAGTGG
CAGCATCCA-CCCCAAATTTACAAGTTTGTTTCCATGCTTGTTGGAATTTCCAGCCTGTGAAGGTTCTGGATGGTGTTGA
TGGAGGCTGGTGTTGTGGGACTAGCAGTATGGCAGGTTGGAGATGATCCTGACCTCTTAATGTGCTGAAATGATGGTTTC
GGTCGGTGGCTTGGTGCATGCCTGGTTGTTAATGATTAATA-----TTTTGGGTGGTTCTATTCCCCTTTGGTGG---CC
TGGACCTGCCTTTTTTCTTGGTTGCTTTCCATACTACATACGGCTCTTATACTGATTATCAATTACTACT----------
-----ACAACAGTGCTAATCATGGTGCTAATACTCCTGC--------CAGTTGGTGTGTG--TG--CTTGTGATTACAAA
CTGTTGCTGCCACATGGTGTGCCTCTATATGT----
>chr4B_2506
TTT-----------------------------------------------------------------------------
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----------------------------------------------------GGATCCAGCACACTATCCATTGCTTACC
ACTTAAGTTGGCTC---------CTTC---------TTCTTCCTCTATCCATCCAAGAGATATAGATAGATAGATACTAA
GTAGCTAGAGTCAAAAATTGTTGGTGAATTTCTGAAACTCCTTTTA---GAATCTTCAGTCAGAAAGAGGTATGCCTATG
----TTAGTTATGAAAGTTACATGTGTGTGTGTGT------GTGTGTGTTTGTACAGTGACATGTAGTATGGAAAAGTGG
CAGCATCCACCCCCAAATTGACAAGTTTGTTTCCATGCTTGTTGGAATTTGCAGTATGTGAAGGTTCTAGATGGTGTTGA
TGGAGGCTGGTGTTGTGGGACTAGCAGTATGGCTGGCTAGAGATGATCCTGACCTCTTAATGTGCTGAAATGATGGTTTG
GGTTGGTGGCTTGGTGCATGCCTGGTTGTTAATGATTAATA-----TTTTGGGTGGTTCTATTACCCTTTGGTGG---CC
TGGACCTGCATTTGTTCTTGGTTGCTTTCCATACTACATACAGCTCTTGTACTGATTATCAGTTACTACT----------
-----ACAACAGTGCTAATCATGGTGCTAATACTCCTGC--------CAATGGGTGTGTGTGTG--CTTGTGATTACAAA
CTGTTGCTGCCACATGGTGTGCCTATGTATGT----
>chr4A_2506
TTT-----------------------------------------------------------------------------
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----------------------------------------------------GGATCCAACACACTATCCATTGCTTACC
ACTTAAGTTGGATC---------CTTC---------TTCTTCCTCTATCCATCCAAGAGAGATAGATAGATAGATACTAA
GTAGCTAGAGTCAAAAATTGTTGGTGAATTTCTGAAACTCCTTTCA---GAATCTTCAGTCAGAAAGAGTTATGCCTATG
----TTAGTTGTGAAAGTTACATGTGTGTGTGTGTGTGTGCGTGTGTGTTTGTACAGTGACATGTAGTATGGCAAAGTGG
CAGCATCCACCCCCAAATTAACAAGTTTGTTTCCATGCTTGTTGGAATTTGCAGCCAGTGAAGGTTTTGTATGGTTTTGA
TGGAGGCTGGTGCTGTGGGACTAGCATTATGGCTGCCTGGAGATGATCCTGACCTCTTAATGTGCTGAAATGATGGTTTG
GGTTGGTGGCTTGGTGCATGCTTGGTTGTTAATGATTAATA-----TTTTGGGTGGTTCTATTCCCCTTTGGTGG---CC
TGGACCTGCAGTTGTTCTTGGTTGCTTTCCATACTACA------------------------------------------
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>SNPs
S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS---------------S--S---------S-----------------S-SSSSSSSSSSSSSSSS--------------
----------------------------S---SSS---------------------------------------S-----
----------------------------------------S--SSS-------------------------SS-S--S--
-S--------------S----------------------------------------S---------S------------
--S--------S---S---------------S----------S-------------SSSSSSSSSS---SS-S-------
------S--S--S--SSSS-S-SS---S---S------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------S----S--------
--------------------------------S-----------------------------------------------
----------S--------S-----------------S----------S------------------------SSSSS--
---------------------------------------------S-----S---------S--S-S-----SS-S--S-
-------S-S----SS-------------S------------S----S--------S-S---------------------
---------------S------------------S-------SS-S--S----S---------S--S-------------
---S----------------------S-------------------------------------------------SSS-
---S---------S----S------------------------------------------------------S------
-----------S-------------------------------S-----------SSS-SSSSSSSSSSSS---------
---------S-S-------------S------------------------------------------------------
-----------------------------------------------------S--------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S--------------------------S---
--------------SS---------S------------------------------------------------------
-S------------------------------------------------------------------------------
-S-----------------------S-S---------------------------------S--------S---------
----S---S----------------------S-S---------------SSSSSSSSSSSS-------------------
-----S---------------S---S-----------------SS---S-------------------------------
-----S----------SSSSSS----------------------------------------------------------
-----S--------------------------------------------S-----------------------------
------------------------S-------------------------------------------------------
------------------------S---S-------SSSS-----S---S---S----------S------------S--
--S--------S----------------------------------------------------------S---------
----S---S--------------SS-------------------------------------------------------
--------------------------------------------------------------------------------
-------------S---S-SSSS-------------------------------------S-----S-------------
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---------------------------SSSSSSSSS---------SS---------S-SS-----S--------------
---------------------------------------S--S------------------S-----S--S---------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
----S--------------------------------------------------S------------------------
-------------------------------SSSSS-SSSSSSSSS----------------------S------SSS--
-----------S----------------------------------------S--------SSSSSSSSSSSSSSSSSSS
SSSSS----------S----------S----S-SSSSS-SSSSSSSS-----------------------------SS--
--------------------------------S---
>forward_72
----------------------------------------------------GCTTGTGAAAACCTGGCTCG--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------
>reverse_2386
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------CTCCATCAGCTCGAT
CCAGC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------
>forward_1982
--------------------------------------------------------------------------------
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------------------------------------------AGCGCACAACCACGAATTTC------------------
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>reverse_3398
--------------------------------------------------------------------------------
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-------------------------------------CACCCACCATCATCCCCAAA-----------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------
>forward_2129
--------------------------------------------------------------------------------
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-----------------------------CCCGACCTTATCTCGACGTC-------------------------------
--------------------------------------------------------------------------------
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>reverse_3410
--------------------------------------------------------------------------------
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-------------------------------------------------TCCCCAAAATCCCAAGCCAA-----------
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--------------------------------------------------------------------------------
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------------------------------------
>forward_3399
--------------------------------------------------------------------------------
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-------------------CCAATAATCCCACCCACCCA-----------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------
>reverse_4478
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------GAA
CTGTTGCTGCCACATGG-------------------
