>input_sequence_59350
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-------------------ATGGCGCGGTTTGCTGCGCT------------CGCCGCGCTTCTGCTCGCCGTGGCGGTGG
GCGGCGCCGCGGCGCAGGGCGTGGGCTCCGTCATCACGCAGTCCATGTACGCGAGCATGCTGCCCAACCGCGACAACTCG
CTGTGCCCGGCC-AGGGGGTTCTACACGTACGACGCCTTCATCGCCGCCGCCAACACCTTCCCGGGCTTCGGCACCACCG
GCAGCGCCGACGATGTCAAGCGCGAGCTCGCCGCCTTCTTCGGCCAGACCTCACACGAGACCACCGGTATG--TCAGTT-
---AGT--------------------GTTGATTTCGATTGTTGTTTTCAAT------GGAATTCGTGGCTGCCTTGATTA
ACTGAA-----------------------GTACGTGTTTGTGCATGCCGTGTCAACGTGCAGGCGGGACGAGAGGCGCCG
CCGACCAGTTCCAGTGGGGCTACTGCTTCAAGGAGGAGATAAACAAGGCCACGTCCCCACCCTACTATGGACGGGGACCC
ATCCAATTGACAGGGTGAGCAAAATCGCAAATTA-TG---GC--------------------------------------
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---------------CTACTA------CTTTGAAGCATCT------------TCCACATG--------CAAAATGATAC-
TTGGTCAACCCAA--ATATCACAGGCTCAAATAATCTGTAG--AA-AAATCTGGTTGAAA---AGTACAGCAGTGTTGAC
ATTCTAGCTAGCCGCTAATCCCGACCTGATCCAAATAAGCTTTCGTTTTCGCGTGCAAC-AATTGTTAATAACAGCAAAT
ACCCAGCTGGGTCTTGGTTGCTTTGCCGAAAAGA-TTGTTCT-GATGAACCAGTAA---TTCCTCGTGC----GAATGAC
CAGGCAGTCCAACTACGATCTCGCCGGGAGAGCCATCGGGAAGGACCTGGTGAGCAACCCGGACCTGGTCTCTACGGACG
CGGTGGTGTCGTTCAGGACGGCGATGTGGTTCTGGATGACGGCGCAGGGCAACAAGCCGTCAAGCCACGACGTCGCCCTA
GGCCGCTGGACGCCGACGGCCGCCGACACCGCTGCCGGTCGGGTGCCCGGATACGGCGTGATCACTAATATCATCAACGG
CGGGCTCGAGTGTGGCATTGGCCAGAACGATGCCAACGTCGATCGCATCGGCTACTACATGCGCTACTGCAGCATACTCG
GCACGGCCACCGGGGGCAACCTCGACTGCTACACCCAGCGAAACTTCGCTAGTTAG------------------------
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>chr1A_1_TraesCS1A01G203600
CACATTTACATGAATTATGTCTAAATCTGTCTGTATTGCGAACGAAGGTGTACGACTCGTTAGATGACCGGCTCCTGTAC
CACTATCTACGTCCGCGTCTGTTTTTGGGGGCGGGGTTGGAGATGCCCTTACTACTGGCAAGCGAGATGTACATATTTTG
CGTCACTTATCTACACATTTGCCAGTCTAGTTTGTTCAACGCAAATTGTCATTTGCCAGTCTAGTTTGTTCAACGCAAAA
TTTGGTCCGATTACTACCATGTTTTATCTAATGTGTTAAATTTAAAATAC----AACAGGAAATTCCTCTTGTTGACGAA
ACGCTGATCTCTTCCCTGCTCCAACCACCTATCTTTACCGAGTCCCAATCCATGTGATATTTGATGGCTTCGTGTTCGGT
CTGGATTCGACCATTGGACGCCGAGCTGGAGTTTTTCCACGAGCCGTCGACGACGTAGAAGCTTCTTCCAGTCCTCCCAT
TCATGCGCTGTACAAGGCTGACCAACGCGAGGCACTGCACCCCCAAAA---AAACAGTAGCAGTACAACCACATGATGTT
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-----------------------------------------------------------------------------CAG
CAGCCATGTGTATCTGTACACCGTCCCAAGAAGTCTGCGCGTATCGCCAACGCCCTGAAAAGAACTTGTTTGTGCAGACG
TGTGGAATTCACGTAGAGATATGTA----TACATGGGAGGCCACATGCGTCTGCAAGCACGCGGCTGCGAGAGTGATAAC
GATACGCCACATGCCTCTTGTTTAAAAAAAAAAGATAC------------------------------------------
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---------------------GCCACATGCC-TCCATCGTCCTGACACCGCGGCCCGTCAAATTTTCGCCCCGCA---AA
GA-------CGGGCGCAACGTGGAAAAGTATACGCCCGCGAC-----------------------GAACCGTGCATAATC
ACCGCGTTATCC---------CCGCGCTGCACCCGAGCAGAGCTGCTATAAGTACCGCTGCAGA-----CC---CAGCAG
CTTCGTCACACAGGCCTCTCTCCA-CTCTCCT-------TGAGCTATACTA-----CATTACACGAGCTGGTCAGCTGTA
GGTG--AGCTAGTGAGC--ATGGCGCGGTTTGCTGCGCT------------CGCCGCGCTTCTGCTCGCCGTGGCGGTGG
GCGGCGCCGCGGCGCAGGGCGTGGGCTCCGTCATCACGCAGTCCATGTACGCGAGCATGCTGCCCAACCGCGACAACTCG
CTGTGCCCGGCC-AGGGGGTTCTACACGTACGACGCCTTCATCGCCGCCGCCAACACCTTCCCGGGCTTCGGCACCACCG
GCAGCGCCGACGATGTCAAGCGCGAGCTCGCCGCCTTCTTCGGCCAGACCTCACACGAGACCACCGGTATG--TCAGTT-
---AGT--------------------GTTGATTTCGATTGTTGTTTTCAAT------GGAATTCGTGGCTGCCTTGATTA
ACTGAA-----------------------GTACGTGTTTGTGCATGCCGTGTCAACGTGCAGGCGGGACGAGAGGCGCCG
CCGACCAGTTCCAGTGGGGCTACTGCTTCAAGGAGGAGATAAACAAGGCCACGTCCCCACCCTACTATGGACGGGGACCC
ATCCAATTGACAGGGTGAGCAAAATCGCAAATTA-TG---GC--------------------------------------
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---------------CTACTA------CTTTGAAGCATCT------------TCCACATG--------CAAAATGATAC-
TTGGTCAACCCAA--ATATCACAGGCTCAAATAATCTGTAG--AA-AAATCTGGTTGAAA---AGTACAGCAGTGTTGAC
ATTCTAGCTAGCCGCTAATCCCGACCTGATCCAAATAAGCTTTCGTTTTCGCGTGCAAC-AATTGTTAATAACAGCAAAT
ACCCAGCTGGGTCTTGGTTGCTTTGCCGAAAAGA-TTGTTCT-GATGAACCAGTAA---TTCCTCGTGC----GAATGAC
CAGGCAGTCCAACTACGATCTCGCCGGGAGAGCCATCGGGAAGGACCTGGTGAGCAACCCGGACCTGGTCTCTACGGACG
CGGTGGTGTCGTTCAGGACGGCGATGTGGTTCTGGATGACGGCGCAGGGCAACAAGCCGTCAAGCCACGACGTCGCCCTA
GGCCGCTGGACGCCGACGGCCGCCGACACCGCTGCCGGTCGGGTGCCCGGATACGGCGTGATCACTAATATCATCAACGG
CGGGCTCGAGTGTGGCATTGGCCAGAACGATGCCAACGTCGATCGCATCGGCTACTACATGCGCTACTGCAGCATACTCG
GCACGGCCACCGGGGGCAACCTCGACTGCTACACCCAGCGAAACTTCGCTAGTTAGACAGTGTATCCACGCCTTATGAAT
AAGTGTCTATACTTATGCCATTGTGGAATAAATAATTCAACATGTGATCAGTTGATTCGTATGGTAATACGACTAAGTTG
TTGCAACAAATTATGGAAATTAAATAAAATCAGATGATA---------TTGTTATGTTGTGTACACAAGATAATGTATAA
CAGGCCGACCAGAGTGATAGCTGTGTGTTTTTTTCCGGGGAAAGTATGATAGCTGTGTTGCTTGTCCAATCAGTAGTGCC
CTCATGTCGCGAACCAATTTGTGATTAGATGGTTAGAAGGACACAAGGATAGTGGTAT--CCAGCTCATCAGGGTTCAAG
TTCCATACTTGACATTTTGTGCTCGCATTATTTCTGGATTTATTTCAGTTCTCCGGCGATGTTCGTTCAGTGGGAGAAGA
CATTCGGTCAACTGCGAGACGTCTATGGTGACTTTATAAAATCTCAAGACACTATACCAACTCAGTCTCTCGGAGGTGCT
TATAGGGGTAGGATGTGCGTGT-TGTGTTCATAAGGGTAAGTGTACTTTAGTGTATGTGAGCGATTTCAATTGTACTGTG
TTAAAGAAAAGCAGTACCCTTATGTCCGGCTATAGGGCAGCCTCGCCTAAAGAGAGCGTTGTTGTACTGCATCGTCACAA
TGTGCGGGTGGAGATGATTTTTTTTCTTTTTTTCAATGTTTATTGTTTTTACCTTTTCCTTTATTTTTTTACTTTTATTT
ATACTTCCAAATATTCCAAACATATTTGATATATATTACCAAAAACACTCTCACATAAAACATTTCGAAAATGTTAATCA
AGTATTTAAAAAATATTAAATGTGTATAGAAAAATGTTGCTCGTGTATATGGAAAATGTATACAGAAAAATACATAATGT
GTATTAAAAAAGTTGATCATGTATTCAAACTTTGGCACCTTTTGGGTTCCTTTGCTATATTTAGAGAATTAGTTAATTTC
AAGATATTTAATGGAGGTAAATGATTGT
>chr1B_5
----TTTAAATGAATTATGTCCAAATCTGTTTGTATTGTGAACGGAGGTGTACGACTCGTTAGATGGACGGCTCCTGTAT
AACTATCTATGTCCGCGTCCGTTTTTGAGGGCGGGGTTGGAGATGCCCTTACTACTGGCAAGTGAGATGTACATTTTTTG
TGTCTCTTATCTACACATTTGCCTGTCTAGTTTGTTCAACGCAAAT----------------------------------
TTTGGTCCGATTACTACCATGTTTTATCTACAGTATTAAATTTAATTAAAACACAACTGGAAATTCCTCTTGTTGACGAA
ACGCTGATCTCTTCCCTGCTC--ACCACCTATCTTTACCGAGTCCCGATCCATGTGATATTTGATGGCTTCGTGTTCGGT
CTGGATTCGACCATTGGACGCCCAGCTAGAGTTTTTCCACCAGCCGTCGACGACGTAGAAGCTTCTTCCAGTCCCCCCAT
CCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATCAGCAG
CAACCATGTGTATCTGTACACCGTCGCAGGAAGTCTGCGCGTATCACCAACGCCCTGAAAAGAACTTGTTTGTGCAGACG
TGTGGAATTCACGTAGAAGTA--TA----TACATGGGAGGCCATATGCGTCTGCAAGCACGCGGCTGCGAG---------
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-------AGTGATAACGAGACGCCACATGCG-TCCATCGTCCAGTCACCGCGGCCCGTCAAATTTTCTCCCCGCA---AA
GA-------TGGGCGCAACGTGGAAAAGTATAGGCGCGCGAT-----------------------GGACCGTGCATCGTC
ACCGCGTT-ATCCCCGCGCTGCAC-------CCCGAGCATGGCAGCTATAAGTACCGGTGCAAA-----CCAAGCAGCAG
CTTCATCACACAGGCCTCTTGCAAGCTCTCCT-------TGAGCTATAC--------ATTACACGAGC-GATCTGCTGTA
CGTG--AGCTAGTGAGC--ATGGCGCGGTTTGCTGCGCT------------CGCCGCGCTTCTGCTCGCCGTGGCGGTGG
GCGGCGCCGCCGCGCAGGGCGTGGGATCCGTCATCACGCAGTCCATGTATGCGAGCATGCTGCCCAACCGCGACAACTCG
CTGTGCCCGGCC-A-GGGGTTCTACACGTACGACGCCTTCATCGCCGCTGCCAACACCTTCCCGGGCTTCGGAACCACCG
GCAGCGCGGACGATGTCAAGCGCGAGCTCGCCGCCTTCTTCGGCCAGACCTCCCACGAGACCACCGGTACG--TCAGTCT
GTCAGT--------------------GTTGATTTCGATTGTTGTTTTCAAC------GGAATTCGTGGCTGTCTTGATTA
ACCGAA-----------------------GTACGTGTTTGTGCATTCCGTGCCAACGTGCAGGCGGGACGAGAGGCGCTG
CCGACCAGTTCCAGTGGGGCTACTGCTTCAAGGAGGAGATAAACAAGGCCACCTCTCCACCCTAATATGGGAGGGGACCC
ATTCAATTGACAGGGTGAGCAAAATCGCAAATTA-TTATAGCT-------------------------------------
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-------------------TA------CTCTGAAGCATCT------------TCGACATG--------CAAAATGATATA
TAGGTCAACGAAA--ATATCACAGACTCAAATAATCTGTAG--AAGAAATAACAACAAAGACCTGATCCAA---------
-----------------------ACCTGATCCAAATAAGCTTTCGTTTTCGCGTGCAATTAATTGTTAATAACAACAAAG
ACCCGGCTGGGTCTTGGTTGCTTTGCCGAAAAGG-TTGTTCT-GATGAACCAGTAA---TTCCTCGTGC----GAATGAC
CAGGCAGTCCAACTACGATCTCGCCGGGAGAGCGATCTGGAAGGACCTCGTGAGCAACCCGGGCCTAGTGTCCACGGATG
CGGTGGTGTCCTTCAGGACGGCCATGTGGTTCTGGATGACGGCGCAAGGCAACAAGCCATCGTCCCACGACGTCGCCCTC
CGCCGCTGGACGCCGACGGCCGCCGATACCGCTGCCGGTCGGGTGCCTAGATACGGCGTAATCACCAATATCATCAACGG
CGGGCTCGAGTGTGGCATGGGCCAGAACGATGCCAACGTCGATCGCATCGGCTACTACATGCGCTACTGTGGCATGCTCG
GCACAGACACTGGAGGCAACCTCGACTGCTACACCCAACGAAACTTCGCTAGCTAGAAGT--------------------
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>chr1D_108
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---------------------------GGGGCGGGGTTGGAGATGCCCTTACTACTGGCAAGCGAGATGTACATCTTTTG
CGTCTCTTACCTACACATTTGCCTGTCTAGTTTGTTCAACGCAAAT----------------------------------
TTTGGTCCGATTACTACCATGTTTTATCTACTGTATCAAATTTAAATAAAACAGAACAGGAAATTCCTCTTGTTGTCGAA
ACGCTGATCTCTTCCCTGCTCCAACCACCTATCTTTACCGAGTCCCAATCCATGTGATATTTGATGGCTTCGTGTTCGGT
CTGGATTCGACCATTGGACGCCCAGCTAGAGTTTTTCCACCAGCCGTCGACGACGTAGAAGCTTCTTCCAGTCCCCCCAT
CCATGCGCTGTACAAGCCTGACCAACGCGAGGCACTGCGCCAAAAGAATTTAACCAGTACTAGTACAACCACATGATGTT
CCGCAGCCCCCGGCCGCTGCACTGCTAC----------------------------------------------------
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--------------------------------------------------------------------------CAGCAG
CAGCCATGTGTATCTGTACACCGTCCCAAGAAGTCTGCGCGTATATCCAACGCCCTGAAAAGAACTTGTTTGTGCAGACG
TGTGGAATTCACGTAGAGATATGTAGTTGTACATGGGAGGCCACATGCGTCTGCAAGCACGCGGCTGCG-----------
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-----ACAGTGATAACGATACGCCACATGCG-TCCATCGTTCAGTCACCGCGGCCCGTCAAATATTCTCCTCGCA---AA
GA-------CGGGCGCAACGTTGAAAAGTATACGCGCGCGAC-----------------------GGACCGTGCGTCGAC
ACCGCGTT-ATCCCCGCACTGCAC-------CCCGAGCATGGAAGCTATAAGTACCGGTGCAAA-----CCAAGCAGCAG
CTTCATCACACAGGCCTCTTGCAAGCTCTCCACTCTCCTTGAGCTATA--------CATTACACGAGCCGATCAGCTGTA
GGTG--AGCTAGTGAGC--ATGGCGCGGTTTGCTGCGCT------------CGCCGCGCTTCTGCTCGCCGTGGCGGTGG
GCGGCGCCGCGGCGCAGGGCGTGGGCTCCGTCATCACGCAGTCGATGTACGCGAGCATGCTGCCCAACCGCGACAACTCG
CTGTGCCCGGCCA-GGGGGTTCTACACGTACGACGCCTTCATCGCCGCCGCCAACACCTTCCCGGGCTTCGGCACCACCG
GCAGCGCCGACGACGTCAAGCGCGAGCTCGCCGCCTTCTTCGGCCAGACCTCACACGAGACCACCGGTACG--TCCGTCC
GTCAGTCAATCAGTCAGTCAGTCAGTGTTGATTTCGG-----------------------------GGCTGCCTTGATTA
ACCGAA-----------------------GTGCGTGTTTGTGCATGCCGTGCCAACGTGTAGGCGGGACGAGAGGCGCCG
CCGACCAGTTCCAGTGGGGCTACTGCTTCAAGGAGGAGATAAACAAGGCCACGTCCCCACCCTACTATGGACGGGGACCC
ATTCAATTGACAGGGTGAGCAAAACCGCAAATTA-TG---GC--------------------------------------
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---------------CTGCC---------TTGAAGCATCT------------TCCACATG--------CAAAATGATATA
TTGGTCAACACAA--ATATCACAGACTCAAATAATCTGTAG--AAGAAATCTGCTTGAAA---AGTACAGCAGTGTTGAC
ATTCTAGCTAGCCGCTAAA-CCGGCCTGATCCAAATAAGCTTTCGTTTTAGCGTGCAAT-AATTGTTAATAACAACAAAT
ACCCAGCTGGGTCTTGATTGCTTTGCCGAAGAGATTTGTTCT-GATGATAAAATAA---TTCCTTGCGC----AATTGAC
CAGGCAGTCCAACTACGATCTTGCCGGGAGAGCGATCGGGAAGGACCTGGTGAGCAACCCGGACCTGGTCTCCACGGACG
CGGTGGTGTCCTTCAGGACCGCGATGTGGTTCTGGATGACGGCGCAGGGCAACAAGCCTTCGAGCCACGACGTCGCCCTA
GGCCGCTGGACGCCGACCGCCGCCGACACCGCTGCTGGTCGGGTGCCTGGATACGGTGTAATCACTAATATCATCAACGG
CGGGCTCGAGTGCGGCATGGGCCGGAACGATGCCAACGTTGATCGCATCGGCTACTACATGCGCTACTGCGGCATGCTTG
GCACGGCCACCGGAGGCAACCTCGAATGCTACACACAGCGGAACTTCGCTAGCTAGACAGTGTATGGACGCGTTATGAAA
AAGTGTCTATACTTATGCCATCGTGGAATAAATAATTCAACATGTGATCAGTTGATTCGTATGGTAATATGACTAAGTTG
TTGTAACAAATTATGAAATTTGAATAAAATCACATTGCATCAACTGGTTTGTTATGTTGTATACGCAAGATGAAGTATAA
CAGGCCGACCAGTGTGGTAGCTGTGTTTTTTTTCCCGGGGAAAGTGTGATAGCTGTGTTACTTGTCCGACCAACAGTGGC
CTTACGTCACGAATCAATCCATGGTTGGATGGTTTGAAGGACACAAAGATACTGGTATCCCCAGCTCAACAGGGTTCAAA
TCTTAGACTTGACATTTGATGCTCGCATTATTTCTCAATTTATTTCAGGTTTTCGGTGATGTTTGTTCAGTGGGAGGAGG
CGTTCCCGTCGATTGCGAGGTGCGTGTGGTATTCG-TAAAATCTCAAGATGCTATACGTGGTCAGTCTCTCGAAAGCGCT
CATAGGGATAGGGTGTGCGTACGTGTGTTCATAGGGATGAGTGTACGCTCGTGTATGTAAGCGATTTCGATTGTACTATG
TAAAAAAGAAGCAGTACCCTTATGTCTCGCTATAGGGCAGCCTCGCCTGAAGACAGCGTTGTACTATG---TCATCCCAA
CATGCAGGAGGATGATCATTTTTTTCCC-TTTTCCATCTTTATTGTTTTTACCTTTTGCTTTC-TTTTTTACTTTTATTT
ATACATCCAAATATTCTAAAC-------ATATATATTACCAAAAACACTCTCACATAAAACATTTGAAAAATGTTACTCA
AGTATTTAAAAA-TATTAAATATGTATAGAAAAATGTTGTTCATGTATATGAAAAATTTATACAAAAAC-TATATAGTGT
GTGTTAAAAAATTTGATCATGTATTCAAA---------------------------------------------------
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>chr5D_743
AACGATACG-----------------------------------------------------------------------
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-----------------------CACATGCG-TCCATCGCCCTGTCACCGCGGCCCGTCAAATTTTCTCCCTGCAAAGAA
GA-------TGGGCGCAAAGTAGAAAAGTATACGTGACGGCCTGGCGGGACAGACGCGTGGAGTGGAACCGTGCATCGTC
ACCGCGTT-TCCTCTGCGCAGCTGCGCTGCACCCGAGCAGAGCAGCTATAAATACCTCTGCAACAACCTCC---AAAATT
CTTCATCACACAGGCATTTTACAAACCTCCCTGAGTTATACTATAAG----------ATTACACTAGCTGATCAGCTGAA
GGAGCTGG----TTAGC--ATGGTGCGTTCTGTCGCGCTCGCCGTGTGCGCCGCCGCGCTTCTGCTCGCCATGGCGGCCG
GCGGTGCGGCGGCGCAGGGCGTGGGCTCGGTCATCACGCGGGCGGTGTACGAGACCATGCTGCCAAACCGGGACAACTCG
ATCTGCCCGGCCAA-GGGGTTTTACACGTACGACGCCTTCATCGCCGCCGCCGGCACCTTCCCGGGGTTCGGCACCACCG
GCAGCGCGGACGACGTGAAGCGCGAGCTCGCCGCCTTCTTCGGCCAGACCTCCCACGAGACCACCGGTACG--TCCATCA
GTCAGT--------------------GTGGATTGCGGTTATTTGTTTATTATAAACAGAAATTCGTGGCACTTTTGATTC
GGACATGACTA--TACCTTGATTAGTC--GTATATGTTTGTGCATGGCGTGTCAACGTGCAGGAGGGCC-----------
----CCAGTTTCAATGGGGCTACTGCTTTAAGGAAGAGAAAACCATGGCCACGTCTCCACCCTACTATGGACGGGGACCG
ATTCAATTAACAGGGTAAGCAAAATCACAAGTTA-TTACAGC--------------------------------------
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---------------CTATAGGGCAATACTATTTTCTAGAATATACTAGTACTCCAGATG--------CAAAACGATGTA
TTGGTCAACACGA--ATATCGCAGGCTAAAAATATCTGTAG-AAA-AAAACTGCTCGAAA---AGTACAGCAGTGCTGAC
ATGCAAAC-----------------------------------------------------------AATAAGCACAGAA
ACCCGGCTGTGTCTTGGTTGCTCTGCCGACAAGA-TTGTTCT-GATGAACCAATGA---TTCGTCGTATGATTGATTGAG
CAGGCAGTCCAACTACGATCTCGCCGGGAAAGCGCTGAAACTGGATCTGGTAAGCAACCCGAACCTGGTGTCGACGGACG
CCGAGGTGTCCTTCAGGACGGCCATGTGGTTCTGGATGACGGCGCAGGGCAACAAGCCGTCGTGCCACGACGTCGCCCTC
CGCCGCTGGACGCCGACGGCCGCCGATACGGCCGCTGGGCGGGTTCCCGGCTACGGCGTGATCACCAACATCATTAACGG
CGGAAGGGAGTGTGGCAAAGGCATGAACCCGGAGAACGTTGACCGCATCGGCTACTACACGCGCTACTGCGGCATACTCG
GCACGGCCACCGGGGACAACCTCGACTGCTACACCCAGCAGAACTTCGCTA-----------------------------
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>chr1B_746
TCAAACTTTGGCACCCTTTTGGGTTGCTTTGCTATACTTAGGGCATTAAGTTAATTTCAAGATATTTAATGGAGGTAAAT
GATTATTGATTTTTAACAAGATGTAAATATGAATTCTAAAACAGTTGAAACTTGTCATGAACTCAGGATACAACTCATAG
AGGGCGTGGTAGAAAATTGAGAGAGTTAAAAAAATGTTGTGATGCACTTCCTTCAAAACTGAAGAGTTCCCGAATAAGTA
TGTGAGTTTCATAGGGAAATTGTGGGGTTTGAAGGGGAACTTAGATTTATGTCATCGTTTCCCCTTGAAACTTCTTCTAT
GTTGAAGATACACCATTTCTAGTTTCATGTTTAGTTTTGCCACTTTTCTAGGTTAATTTGATATGTGACCAACGTTCCTC
GAGACCGTCTTCAGTTTGTAAATAACCTACTCGTAAATTTTTCAAAAATTTATCAAATTTAACTACATACTGTACATGTC
ATGTAATGAGACCATGCAAAGTTTCATATGTTCCAGACAACATTAAAATATTCTAATTTATTTAGAATCCTCTTGCATGT
TTTAAATTAAGTTCATGTGTTTGAACTTTCACATATGCATATTTGATAGTACCAAAGTTTTGTTTCATAAGAACTAAGTG
TATGCTAACTACCTTATTTATGATATTTCTTATTTTCTTGGAAAAATATTTAAATCTACATTCATATTTGAATTAATTTC
AATGAAAATATGCAACTTTATTCATAAAATGCATAAAATATAGCAAATAATGAAACCTACACCATTCCAACCATTTATTA
TACAATATCATAAAAATAAAACACTAAAACTAAAATAGAACACAAAAACATTAAAAAAACTGTAAAACTAACTAATATCA
TTCCAATGGCGGGCATGTCTGGTGGCCCATAATTCCTACCCATGGCTACCACAGTGCCAAATCGGGCCCACATTACCATT
GACGTTCACGGGTGTTTGACCGCCATTGGTACCATCGACATCAATGGCGAACAATATTTGTTGCTCGTCACTGGTAAAGT
TTGGCCCACGTATAACCTTAGATCAGATTACCAATGACGGGTGCCTCTGCCGTCACTCGTGAGGTCCTATCTATAAGCGC
ATCTCCAAAAAGGACCCTCAAACCTCCATTATATGTCCGGGCCGTAGTGTCTGTACCACTTTTTTCATCCAATTTGGTCA
TGTATTTGTCCGATTAGCAGTCCCGACGTACGGATTTTGGTACCCAAGAGACAAATGTGTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCATGCACTTGACCAATCATGTATGATGATATTTTCTATGTGTTTATGAATAAAGATAGTTCTTG
GACATTATCAATAATGTGTATCAACAAGTACGTGACTTGTTTGTGGGACTATGCATGTGACTGTCCTAAATGGTCCCTAG
TCGAAAGGGCTGTGGACGCTCAGCCAACTAGACTAGCATATGACACGGTGGGTGGCTCGGTCGCACTAACCATGGAGCAT
TGGATACTAGCCGGATAATATAGACTCGGAAGGATCTGGTCGGATTTGATCGCTTCGGCCCTGTCACTAGGGCTTTGCAT
GTGTTGGAAGTCGCCACCTCCACTCGTCGCCGACTGTGTGATCGAACCTAGCAGTCAGCCGCACGGTGTTCTTCTTGCAC
GCGCGGATACCGTTAGAAGCGGTGCACTTGCGCCGCTACGGCGAACCAACACGTGGGATCCGACAACCGGTTGTTTGAGG
GAGATCGGCCGAAGAGGAGACGAACCCCGCGGACACGCTGCGCCAACTCTACTTCCGTTGTACTGCATTGCGCGTCTAGT
GGTAACGATTAGTAATCCATCTCTCGTAGCATGTTCTTGGTTGATCTGCGCGTAGAATTTTTTTAATTTGCAGTCAACGC
CCCCCTAGCGTAGAACCCAATATCCCGCTCTCCTCCCAACCGCGCATACATGGTCTCCCTCCACCCCCTCTTCTCCCAAC
CAGACATTAAACCATAAATATTCCACGGGATGTATGGTTCCCACCTACGTTTCCTCCTTCCAACTGGATACTTTCTGATT
TGCATTGAATGACTCATCCCGCATAATATCCGTGGACAACCTCCGGACATAAAAACAGAGATATATGGGAAGATTTTGCG
GGTCGGCGGTGCAGATGCCCTAAGCATTCTTCTAGTAGTGTGTGTCGTTGTTAGAAATAAAAAAAGGAGAAATTTCAATA
TAGTGAAGTTAGTTGGAGGGTACACCACACCTAGGTTTAGAAGTGACATTAAAGTTTGGTTATGTGAAAATAACAGTAGA
CCGTATGATTTTCTAATGAAACCTCCACTGGTTCCTGATATAATTTGATGGCTTGAGTTCTAGTATATCTGGATTGGATC
ATTGGGCGCGGAGTAGCGTATTTCCAATCCACGGGCCGGCCGGCGACGACGACGTAGAAACTTCTTTCGGAGGCCCCCGC
CCATGCGCTGTGCAAGTGCAAGTCTGACCGGCGTGATGCGCTGTACCTAATGAAGCTTAGCAAGTACAGCCAGAACCATA
TGAAATTCTTAGCAGCCAGCGGCCGCCGGACGCTAGCTGCAGCATGCATGTGACTGCACACTATGCCAAGAAGCCCGAGC
GTATCGACAACGCCCGGAAAAGGACCCTTTTGTGCAGATGCGTGGAATTCCGTATGTACTCTAGCATGGATGAGACGGAC
TATGAACAATAGTCATGATGCGCCACATGCCGTCCGTTGTCCTATCACC-CGGCCCGTCGGATTTTCTCCCCGCA---AA
TGAAGATCGCGCGCGCAACGTGGAAAAGCCGGAT------------------------------------GTGCATCGTC
AGCGCATT-TCC---------GTGCGCTGCACCCAAGCTGAGCAGCTATAAATACAGCTGCAAA-----CCA------AG
CTTCATCACACAAGCGTCCTGCAAGCTCTCCTCTTGCGCTATACCACACAGGAGTGCATTACACGAGCTGATTAGCTGAA
GGTG--GG----TTGGC--ATGGCGAGGTTTGCTGCCCTCGCCGTGTGCGCCGCCGCGCTCCTGCTCGCCGTGGCGGTGG
GCGGCGCCGCGGCACAGGGCGTGGGCTCGGTTATCACGCGGTCGGTGTACGCGAGCATGCTGCCCAACCGCGACAACCCG
CAGTGCCCGGCCA-GGGGGTTCTACACGTACGATGCCTTCATCGCCGCCGCCAACACCTTCCCGGGTTTCGGCACCACCG
GCAGCTCGGACGACATCAAGCGCGAGCTCGCTGCCTTCTTCGGCCAGACCTCACACGAGACCACCGGTACG--TCAATCA
GCCACT--------------------GTTGATTTCGATTGCTGTTTTCAAC------GGATTTCGTGGCACTTTTGATTT
GGACAT----CGCTGCCTTGGTTAATCGTGTACGTGCTTGTGCATGCCGTGTCAACGTGTAGGAGGGACGAGAGGCGCCG
CCGACCAGTTCCAATGAGGCTACTGCTTCAAGGAAGAGATAAGCAAGGCCACGTCTCCACCCTACTATGGACGGGGACCC
ATCCAATTGACAGGGTAAGCAAAATCCCAAATTG-TG---GC--------------------------------------
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---------------CTATATGACAATCTCTATAGCATCT------------TCCACATG--------AAAAACAGTATA
TTGGTCAACACTG--ATATCACAGACTGAAATAATCTGTAGAAAA-AAATCTGCTTGAAA---AGTACTGCTGTGTTGAC
ATTCTAGCTAGCCGCTAATCACGACCTGATCCAAATAAGCTTTTGTTTTCGCGTGTAAT-AATTGTTAATAACAACAAAA
ACCCAGTTG------GGTTGCTTTGCCGAAGAGA-TTGTTCTCGATGAACAAATAA---TTCCTTGTGC----CAATGAC
CAGGCGGTCCAACTACGATCTCGCCGGGAGAGCCATCGGGAAGGACCTGGTGAGCAACCCGGACCTGGTGTCCACGGACG
CGGTGGTGTCCTTCAGGACGGCCATGTGGTTCTGGATGACGGCGCAGGGCAACAAGCCGTCGAGCCACAACGTCGCCCTA
CGCCGCTGGACGCCAACGGCCGCCGACACCGCTGCCGGTCGGGTGCCCGGGTACGGCGTAATCACCAACATCATCAACGG
TGGGCTCGAGTGCGGCATGGGCCGGAACGACGCCAACGTCGACCGTATCGGTTACTACACGCGCTACTGCAGCATGCTCG
GCACGTCCACCGGGGGCAACCTCGACTGCTACACCCAGAGGAACTTCGGTAGCTAGAAGT--------------------
--------------------------------------------------------------------------------
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>chr1A_855
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------C
AGCGCATT-TCC---------CTGCGCTGCACCCGAGCCGAGCAGCTATAAATACAGCTGCAAA-----CC---AAGCAG
CTTCATCACACAAGCGTCCTGCAAGCCCTCCTCCTGCGCTACACCGCACAGGAGTGCATTACACGAGCTGATCAGCTGAA
GGTG--AG----TTGGCCTATGGCGAGGTTTGCTGCCCTCGCCGTGTGCGCCGCCGCGCTCCTGCTCGCCGTGGCGGCGG
GGGGTGCCGCGGCGCAGGGCGTGGGCTCGGTCATCACGCGGTCGGTGTACGCGAGCATGCTGCCCAACCGCGACAACTCG
CTGTGCCCGGCCA-GAGGGTTCTACACGTACGACGCCTTCATCGCCGCCGCCAACACCTTCCCGGGCTTCGGCACCACCG
GCAGCGCCGACGAAATCAAGCGCGACCTCGCCGCCTTCTTCGGCCAGACCTCCCACGAGACCACCGGTACG--TCAGTCA
GCCACT--------------------GTTGATTTCGTTTGATGTTTTCAAC------GGATTTCGTGGCACTTTTGATTT
GGACATGCATCGCTGCCTTGGTTAATCGTGTTCGTGCTTGTGCATGCCGTGTCAACGTGTAGGAGGGACGAGAGGCGCTG
CCGACCAGTTCCAGTGGGGCTACTGCTTCAAGGAAGAGATAAGCAAGGCCACGTCCCCACCATACTATGGACGGGGACCC
ATCCAATTGACAGGGTAAGCAAGATCCCAAGTTTATG---GT--------------------------------------
--------------------------------------------------------------------------------
---------------CTATAAGACGATCTCTGAAACACCA------------TCCACATG--------AAAAACAGTATA
TTGGTCAACACTG--ATATCACAGACTGAAATAATCTGTAGAAAA-AAATCTGCTTGAAA---AGTACAGCTGTGTTGAC
ATTCTAGCTATCCGCTAATCACGACCTGATCCAAATAAGCTTTCGTTTTCGCGTGCAAT-AGTTATTGATAATAACAAAG
ACACGGTTGGGCCTTGGTTGCCTTGGCGATGAGA-TTGTTCT-GATGAACCAATAACTCTTCCTCGTGC----GATTGAC
CAGGCGGTCCAACTACGATCTTGCCGGGAGAGCGATCGGGAAGGACCTGGTGAGCAACCCAGACCTAGTGTCCACGGACG
CGGTGGTGTCCTTCAGGACGGCCATGTGGTTCTGGATGACGGCGCAGGGAAACAAGCCGTCGTGCCACAACGTCGCCCTA
CGCCGCTGGACGCCGACGGCCGCCGACACCGCTGCCGGCAGGGTGCCCGGATACGGAGTGATCACCAATATCATCAACGG
CGGGCTCGAGTGCGGAATGGGCCGGAACGACGCCAACGTCGACCGCATCGGCTACTACACGCGCTACTGCGGCATGCTCG
GCACGGCCACCGGAGGCAACCTCGACTGCTACACCCAGAGGAACTTCGCTAGCTAGAAGT--------------------
--------------------------------------------------------------------------------
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----------------------------
>chr1D_865
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---------TCC---------CTGCGCTGCACCCGAGTTGAGCAGCTATAAGTACAGCTGCAAA-----CC---AAGCAG
CTTCATCACACAAGCGTCCTGCAAGCTCTCCTCTTGCGCTATACCACACAGGAGAGCATTACACGAGCTGATTTGCTGAA
GGTG--AG----TTGGC--ATGGCGAGGTTTGCTGCCCTCGCCGTGTGCGCCGCTGCGCTTCTGCTCGCCGTGGCGGTGG
GCGGCGCCGCGGCGCAGGGCGTGGGCTCGGTCATCACGCGGTCGGTGTACGCGAGCATGCTGCCCAACCGCGACAACTCG
CTGTGCCCGGCCC-GGGGGTTCTACACGTACGACGCCTTCATCGCCGCCGCCAACACCTTCCCGGGCTTCGGCACCACCG
GCAGCGCCGACGACATCAAGCGCGACCTCGCTGCCTTCTTCGGCCAGACCTCGCACGAGACCACCGGTACGAGTCAGTCA
GCCACT--------------------GTTGATTTCGGTTGCTGTTTTTAAC------GGATTTCGTGGCACTTTTGATTT
GGACAT----CGCTGCCTTGGTTAATCGTGTACGTGCTTGTGCATGCCGTGCCAACGTGTAGGAGGGACGAGAGGCGCTG
CCGACCAGTTCCAATGGGGCTACTGCTTCAAGGAAGAGATAAGCAAGGCCACGTCTCCACCCTACTATGGACGGGGACCC
ATCCAATTGACAGGGTAAGCAAAATCCCAAGTTTATG---GC--------------------------------------
--------------------------------------------------------------------------------
---------------CTATAAGACGATCTCTCA---AACA------------TCATCCACATGAAAAAAAAAACAGTATA
TTGGTCAACACTG--ATATCACAGACTGAAATAATCTGTAGAAAA-AAATCTGCTTGAAA---AGTACAGCAGTGTTGAC
ATTCTAGCTAGCCGCTAATCACGACCTGGTCCAAGTAAGCTTTCGTTTTCGCGTGTAAT-AATTATAAATAACAAGAAAA
GCCCAGTTG------GGTTGCTTTGCCGAAGAGA-TTGTTCT-GATGAACAAATAA---TTCATTGTGC----GATTGAC
CAGGCGGTCCAACTACGATCTCGCCGGGAGAGCCATTGGGAAGGACCTGGTGAGCAACCCGGACCTAGTGTCCACGGACG
CGGTGGTGTCCTTCAGGACGGCCATGTGGTTCTGGATGACGGCGCAGGGCAACAAGCCGTCGAGCCACAACGTCGCCCTA
CGCCGCTGGACACCGACGGCCGCTGACACCGCTGCCGGCCGGGTGCCCGGATACGGAGTAATCACCAATATCATCAACGG
CGGGCTCGAGTGCGGCATGGGCCGGAACGACGCTAACGTCGACCGCATCGGCTACTACACGCGCTACTGCAGCATGCTCG
GCACGTCGACCGGGGGCAACCTCGACTGCTACACACAGAGGAACTTCGCTAGCTAGAAGT--------------------
--------------------------------------------------------------------------------
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>chr5B_1015
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----------------------------------------------TGCGCCGCCGTGCTTCTGCTCGCCGTGGCGGCGG
GCGGCGCGGCGGCGCAGGGCGTGGGCTCGGTCATCACGCGGCAGGTGTACGACACCATGCTGCCCCACCGGGACGACTCC
ATCTGCGAGGCCAA-GGGGTTTTACACGTACGACGCCTTCATCGCCGCCGCCAGCACCTTCCCGGAGTTCGGCACCACCG
GCAGCGCAGACGACGTGAAACGCGAGCTCGCTGCCTTCTTCGGCCAGACCTCGCACGAGACCACCGGTACG--TCAGTC-
---GGT--------------------GTTGATTGCGGTTGTTTGTTTATTATAATTCG---TTCGTGGCACTTTTGATTC
GGACAT----GACTGCCTTGATTAGTCGTACATATGTTTGTGCATGGCGTGTCAACGTGTAGGAGGACC-----------
----CCAGTTCCAATGGGGCTACTGCTTCAAGGACCAGATAGACAAGACCATGCTTGCACCCTACTATGGACGGGGACCG
ATTCAATTAACAGGGTAAGCAAAATCGCGAGTTAAATATTTTCTACTCCCTCCGCCCGGAAATACTTGTCATCAAAATGA
ATAAAAGACGATGTATTTAGATGTATTTCAGTTTTAGATACATCATTTTTTGTCCATTTTGATGACAAGTATTTTCGGAC
GGAGGGAGTACAATACTATAGGGCAATCTCTGA---ACTA------------TCTTCATG--------CAAAATGATGTA
TTGGTCAACATGAATATATCATAGGCTGAAAGTATCTGTAGAAAA-AA--CTGCTTGAAAAGTAGTACAGCAGCGTTGAC
ATGCTTAA------------------TGATGCAAATAA-------------------------------TAAGCACAGAC
A-------------------------CGACAAGA-TTGTTCT-GATGAACCCATGA---TTCCTCGTGTGATTGATTGAC
CAGGCAGTCCAACTACGATCTCGCCGGCAAAGCGCTGAAATTGGATCTGGTAAACAACCCGAACCTGGTGTCCACGGATG
CCGAGGTGTCCTTCAGAACGGCCATGTGGTTCTGGATGACGGCGCAGGACAACAAGCCGTCGTGCCACGACGTTGCCCTC
CGCCGCTGGACGCCGACGGCCGCCGATACCGCCGCTGGGCGGGTTCCCGGCTACGGAGTGATCACCAACATCATCAACGG
CGGGATCGATTGTGGCAAAGGCATGAACCCTTCGAACGTCGACCGCATCGGCTACTACACGCGCTATTGCGGCATACTCG
GCACGGCCACCGGGGACAACCTCAACTGCTACACCCAGCAGAACTTCGCTA-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>SNPs
S-------S------------S--------S-------S---------------------------SS-----------S
S--------S---------S------------------------------------------------------S-----
----S-----------------------------------------SS--S--SSSS-S-SS--SS-SSS-S-SSS-SS-
------------------------------S---------------S--S------------------------------
--------------------------------------------------------------------------------
----------------------S----S------------S---------------------------------S-----
S---------------S------------------------SSS---------S-----SS-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
------------------------------------------------------------------------S-SSS-SS
--SSSS-SSSSSSSS-SSSSSSSS-SSSSS-SSSSSSS------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S----------------------S------------
-----------------------------------S----------------------------------------SS--
--------S-------------S--------------------S------------------S-----------------
----S--------------SS-S--------------------------SS-------------------S---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S--------S-
--------------------------------------------------S-----------------------------
--S-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
---------S-------------------------------------------S--------------------------
----------------------------------------------------------S---------------S-----
--------------------------------------------------------------------------------
------------------------------------------------------------------------S-------
----------S--------------------------------------------------S------------------
--------------------------------------------------------------------------------
------------------S-------------------------------------------------------------
----------------------------------------------------S------------SS----S-------S
---------------------S-----------------------------------------------S----------
---S-----------S--S--S----------S--SSS----------------------S---S------S-S------
------------S---S---------S------S-----------S-------------S-------S-S--SS----S-
--S-S---S----S----SSS--S--S-------S-----------S----S----------------S----------S
-SSS-S-----------SS----------------SS-----------S-S-S---S------S------------S--S
-S---SSSSSSS-SSSSSSSSS-SSSS-SS-S-SSS-------------SS------SSSS-----------S-S-S---
S------S----S-------SS-----------S--S-S-------SS-S--------S---------S--------S--
-S---S-S------------------SS--------------------S----S--------SS--SSSSS--S--S---
SS---S--S---SSSSSS--------SSS-----S--S-------------------S----SS----------------
----S-----------S----SSSSSSS-------------------------------------SS---------S---
------------S--------S-----------------S--S--------S-----S------S---SS--S---S---
--S--------S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_982
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--TACGCCACATGCCTCTTGTT----------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------
>reverse_5200
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------A
CATTCGGTCAACTGCGAGA-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
