>input_sequence_59182
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---------------------------------------------------------------------------ATG--
-------------C---ACGTACGTACCC-----------------------------C------TACTGGTGCAGAGTT
TAGGAAGATCTTAGCTGCACTGCTG-------------------------------GTGGA---GATGGCAGGGAATCGT
GCCTGCATGTTTTCGGTGGCGTTGGCCCTTCTTGGAGTGCTCCTGGCATCCATTCCTACAAGTAATTCCCTTCCCTTCAG
ATCATCTATCGGTG-------------------------------------------AGCAAGCTAGAGTACTAACTTCG
GTTGCGCGTTTCACTGTTGGAAACACACAGCGGTGCAGTCCATCGGCGTGTGCTACGGAGTGAACGGCGACGGCCTGCCC
TCGGCCAGCGACGTCGTGCAGCTCTACCAGTCCAACGGCATCACCGGCATGCGCATCTACTTCCCGGACGCCAACGCCCT
GCAGGCCCTCAGCGGCAGCAACATCGGCCTCATCGTCGACGTGGCC---AACGAGGACCTCGCCTCCCTCGCCTCCGACC
GCTCCGCCGCCACCGCCTGGGTCCAGACCAACGTGCAGGC---CTACCAGGGCC---TCAACATCAAGTACATCGCCGCC
GGTAACGAGGTGGGCGACCAGGGCGGCGACACGGGGAACATCCTCCCGGCCATGCAGAACCTCGACGCCGCACTCTCCGC
GGCCGGGC---TCGG---CGGCATCAAGGTGTCCACGTCGGTCTCGCAGGGCGTGACCACCGG---GTACCCTCCCTCCC
AAGGCACCTTCTCCGCCGGATACATGGGTCCCATAGCGCAGTACCTGGCCAGCACCGGCGCCCCGCTGCTCGCCAACGTG
TACCCCTACTTCTCGTACGTGGACAACCAGGCCCAGATCGACATCAACTACGCGCTCTTCACGTCGCCGGGC---ACCGT
GGTGCAGGACGGCGCCAA------CGCGTACCAGAACCTGTTCGACGCCCTCGTCGACACGTTCTACTCCGCGCTGGAGA
GCGCCGGCGCCGGGAGCGTCAACGTGGTGGTGTCGGAGAGCGGGTGGCCGTCCGCCGGCGGCACGGCGGCGACCACGGAC
AACGCGCAGACGTACAACCAGAACCTGATCAAACATGTCGGACAGGGGACGCCCAAGAGGCCCAGTGCCATCGAGGCCTA
CGTGTTCGCCATGTTCAACGAGGACAAGAAGGGCCCGGCTGAGATCGAGAAGCACTTTGGGCTCTTCAAC---CCGGACA
AATCGCCGGCTTACCCCATCAGTTTCTAG---------------------------------------------------
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-----------------------------------------------------------------------------
>chr3B_1_TraesCS3B01G526000
TTTTTGAATTTTCCTAAATTTTAATTCGTAGATTTGTTTGTAGATTTTTGAAAATTCATGATATTTTTAATTTGTGAACA
TTTTTCCAAGTTCACAACGAATTTTAAAATTCATAAATATTCTTTCAAATTGGTGAACATTTCTATAAATTCACCGATTA
TTTAAAGACATGAACATACTTTAGTTCACGGACCATTTCAAAATTAGTAACAGATTT-TTTTCATAAAACAGTGAACCAG
TAGTAACAGAGAAATAATAA-AAAAGAACAGCGTGCATCGAAGGCGCGAGTGGAGTAACGAGCGAACAACGCAAACTAGG
GACCTTATTGCACCGCCGCCCATGCGGCGTGTGGTACCGACAATTTTCTCAAAATAAAATAAAATAAAAGTGTGGCTAGG
TCTCAGTGAAGTGACATAACGTGAAAGAAAAAACTGAAAAAAAATT-GCACTTAAGGCTGAGACTTAACAAAGTCTCAGT
TGACTAAGACTTATAGAAGACTCGTAAAATAAATTAGCGCTTAAGGCGCTGTAGAGGAGCTCTCGGACTATGCTACCACT
CGGTTTCCTCTTCGGCTCGCATCGGAGCTGGAACTGGTGTCCATGCTTCCAAAACCATTACCATCAACC-------ATAG
AACATGCCAACTAAGTCCAGTCAAAAGGATGTACGTATATCCTACGTACACTGGAATTCCACGCCCCGG-ACGACGAAGC
ACAGCTGTTTCCCCC-GAGTGCTGTGTACGCACTCGCCGCGATTGGTGGACGAGCTCGCCGTCGCCGGCGCGCGCGTAGC
TTACGGGCGATGTTTTGCGCCGAACCAGATCGTGACCTT-GGCACGCATTCCATTCCACGTACGAGGCCAGA---GCAAA
CGTCTACGTACCGTGCCAGCAGCGCTGGAAAACGG-----------GAGCTGGCACCGGC-----GACCGATTGCCGTGC
CAAACTGCCTAATTGCATTACATCCT-GCTTGTGTTGGGCG--TATAAATAGGGGGTGAATGTTTGCTTCATTTCATG--
-------------C---ACGTACGTACCC-----------------------------C------TACTGGTGCAGAGTT
TAGGAAGATCTTAGCTGCACTGCTG-------------------------------GTGGA---GATGGCAGGGAATCGT
GCCTGCATGTTTTCGGTGGCGTTGGCCCTTCTTGGAGTGCTCCTGGCATCCATTCCTACAAGTAATTCCCTTCCCTTCAG
ATCATCTATCGGTG-------------------------------------------AGCAAGCTAGAGTACTAACTTCG
GTTGCGCGTTTCACTGTTGGAAACACACAGCGGTGCAGTCCATCGGCGTGTGCTACGGAGTGAACGGCGACGGCCTGCCC
TCGGCCAGCGACGTCGTGCAGCTCTACCAGTCCAACGGCATCACCGGCATGCGCATCTACTTCCCGGACGCCAACGCCCT
GCAGGCCCTCAGCGGCAGCAACATCGGCCTCATCGTCGACGTGGCC---AACGAGGACCTCGCCTCCCTCGCCTCCGACC
GCTCCGCCGCCACCGCCTGGGTCCAGACCAACGTGCAGGC---CTACCAGGGCC---TCAACATCAAGTACATCGCCGCC
GGTAACGAGGTGGGCGACCAGGGCGGCGACACGGGGAACATCCTCCCGGCCATGCAGAACCTCGACGCCGCACTCTCCGC
GGCCGGGC---TCGG---CGGCATCAAGGTGTCCACGTCGGTCTCGCAGGGCGTGACCACCGG---GTACCCTCCCTCCC
AAGGCACCTTCTCCGCCGGATACATGGGTCCCATAGCGCAGTACCTGGCCAGCACCGGCGCCCCGCTGCTCGCCAACGTG
TACCCCTACTTCTCGTACGTGGACAACCAGGCCCAGATCGACATCAACTACGCGCTCTTCACGTCGCCGGGC---ACCGT
GGTGCAGGACGGCGCCAA------CGCGTACCAGAACCTGTTCGACGCCCTCGTCGACACGTTCTACTCCGCGCTGGAGA
GCGCCGGCGCCGGGAGCGTCAACGTGGTGGTGTCGGAGAGCGGGTGGCCGTCCGCCGGCGGCACGGCGGCGACCACGGAC
AACGCGCAGACGTACAACCAGAACCTGATCAAACATGTCGGACAGGGGACGCCCAAGAGGCCCAGTGCCATCGAGGCCTA
CGTGTTCGCCATGTTCAACGAGGACAAGAAGGGCCCGGCTGAGATCGAGAAGCACTTTGGGCTCTTCAAC---CCGGACA
AATCGCCGGCTTACCCCATCAGTTTCTAGAAGGCGGGA-CACATCTATACGCGTACGTACGTAGCAAGACAACAAGCATT
TCG--TTGCTCAGCTAAAATAAACTACTGCGGGCTTTGTACTT----GAAAGACCAACACCATTTTGATGTAGAATGCGA
GCATCATGCTTTGCATGGATGGCGGAAAAGGTCCCAAATTATTTGGATGACGAAAACGCTCAAATTATTCAACGGAGACA
AAC-AATAAGAGGCACACTGGCAATATTGTGATCTTTCATTTACCACTTCTTTCTGGCGAGCCCTCGGTGCCAGTTGGGT
AATAATTTCACTGGATCAACCGTTTCCTTGGCCTTTGGATCTGACATAAGTCACAACCCTAGGCCGTCTTATGCTGGCAA
CAGAAAACTCACACATGCAACATTTCTCTTGTATGTTTGCAACATCGCTACAACATTGTCCATTGTGATGCTTTGGGTTG
TTCACCTGGAAAAATCTCTGGCACATTCCATTAGTTTCTAATAGGGACACATCAATATGTACATACCTCGACCTTTACAT
AGCAAGATAAGTAGCTTTAGCTTGCTTAGTCTACTGGAATAAGTCATCTCTATTGCAGAATGCATGCGAAACATCATGTG
ATTTGCATGGATGGTAAAAAAAATGCTCAATTTATTCAAGGGAGCTCTTATATATATGTAAAACGACTGAAATGTTTGTT
AGTTTGCACCCATTACACTACCGTAATCTAACCGCCCTCCTTCTTCTTCCACCCCAGCTCTTGTTCTACCTCAGGAAACA
GAAAACGAGGGCTCCCCTCAGCCCTTCTTCCTCTCGCATTCAGCTAACCTTCCGTCCTCTCCTCTGGCTGTGACATCATG
CCTCTCTGCCGCTTGCGGCAGCATCCCCACCTTCACGGAGGAAGTTACCTAATCTGAGTGGTGGCCATCGCTAAAAGCAC
TTCCCTCCACCTGCGCATGTTAACCCTCGGGCTCGTCTTCGACAACGATGTGGTGGCCGGTTGCATCGTTGCCGGCT
>chr3B_4
---TTGAATTTTTTAAAATTGTAATTCCTAGATTTTTTTGTAGATTTTTGAAAATTCACAATTTATT-------TGAACA
TTTTTCCAAGTTCACTACTTATTTTAAAATTCATAAATATTCTTTCAAATTCGTGGACGTTTTTATAAATTCACCGATTA
TTTAAAGCCATGAACATGTTTTAGTTCACGGACCATTTCAAAATTAGTAACAGATTGGTTTCCATAAAACAGCGAACCAG
TAGCAACAGAGAAATAAGAAGAAGAAAACAGCGTGCAGCGAACGAGCGGGCGGAGTAACGAGCGAACAGCGCAAAGTAGT
GACCTTACTGCGCCGCGACCCATGCGGCGTGCGGTACCGACCATTTTTTCAAAATATAATAAAATATAGATGTGGCTAGG
TCTCAGTCAAGTGACATAACATGAAAGAAAAAACTAAAAAAAATTTTGCACTTAAGGCTGAGACTTAAGAAAGTCTCAGT
TGACTAAGACTTAAC-AAGACTCGTAAAATAAATTAGCGCTTAAGGCGCTGTAGAGGAGCTCTCGGACTATGCTACC---
--------------------------ACTGGAACTGGTGTCCATGCTTCCAAAACCATTACCATCAACCATAGAAGATAG
AACATTCCAACTCAGTCCGGTCAAAAGGATGTACGTATATGCTACGTACACTGGAATTCCACGCCCCAGTACGACGAAGC
ACAGCTGTTTCCCCC-GAGTGCTGTGTACGCACTCGCCGCGATTGGTGGACGAGCTCGCCGTCACCGGCGGGCGCGTAGC
TTACGGGCGATGTCTTGCGCCGAACCAGATGGTGACCTTGGGCGCGTATTCCATTCCACGTACGAGGCCAGA---GCAAA
CGTCTACGTACCGTGCCAGCAGCGCTGGAAAACGG-----------GAGCTGGCACCGGT-----GACCGCGTGCCGTGC
CAAACTGCCTAATTGCATTACGTCCT-GCTTGTGTTGTGCG--TATAAATAGGGGGTGAATGTTTGCTTCATTTCATG--
-------------C---ACGTACGTACCC-----------------------------CGGCCCCTACTGGTGCAGAGTT
TAGGAAGATCTTAGCTGCACTACTGGTGCAGAGTTTGAGTACACGAAGATCGACCAGTGGAGATGATGGCAGGGCATCGT
GCCTGCATGTTTGCTGTGGCGTTGGCCC---TTGGAGTGCTAGCAACA---ATTCCTGCAGGTAATTCCATCCACTTCAG
ATTATTTATCGGGCGCAGTTAGGTAACGCAAGCAGCTAGTACGTGCGCTATCAGTTAAGCAAGATAGGGTACTAACCCCA
GTTGCGCGTTCCACTGTTGGAAAAACACAGCGGTGCAGTCTATCGGCGTGTGCTACGGTGTGAACGGCGACGGCCTGCCC
TCGGCCAGTGAAGTCGTGCAGCTCTACCAGTCCAACGGCATCACCGGCATGCGCATCTACTTCCCGGACGCCGACGCCCT
GCAGGCCCTAAGCGGCTCCAACATCGGCCTCATCATCGACGTGGCC---AACGAGGACCTCGCCTCCCTCGCCTCCGACC
GCTCCGCCGCCACCGCCTGGGTCCAGACCAACGTGCAGGC---CCACCAGGGCC---TCAACATCAAGTACATCGCCGCC
GGCAACGAGGTGGGCGACCAGGGCGGCGACACGGGGAACATCCTCCCGGCCATGCAGAACCTCGACGGCGCCCTCGCCGC
GGCTGGGC---TCGG---CGGCATCAAGGTGTCCACGTCGGTCTCGCAGGGCGTGACCGCCGG---GTACCCTCCCTCCC
AAGGGACCTTCTCCGCCGGCTACATGGGGCCCATCGTGCAGTACCTGGCCACCACCGGCGCGCCGCTGCTCGCCAACGTG
TACCCCTACTTCTCGTACGTGGACAACCAGGCCCAGATCGACATCAACTACGCGCTCTTCACGTCGCCGGGC---ACCGT
GGTGCAGGACGGCGCCAA------CGCGTACCAGAACCTGTTCGACGCCCTCGTCGACACGTTCTACTCCGCGCTCGAGA
GCGCCGGGGCGGGGAGCGTCAACGTGGTGGTGTCGGAGAGCGGGTGGCCGTCGGCCGGCGGCACGGCGGCGACCACGGAC
AACGCGCAGACATACAACCAGAACCTGATCAAACATGTAGGGCAGGGGACGCCCAAGAGGTCCGGCGCCATCGAGGCCTA
CGTGTTCGCCATGTTCAACGAGGACAAGAAGGGCCCGGCTGAGATCGAGAAGCACTTTGGGCTCTTCAAC---CCGGACA
AATCGCCGGCGTACCCCATCAGTTTCTAGAAGGCGGGA-CGCATCTATACGCGTACGTACGTAGCAAGACAACAAACATT
TCCTTTTGCTCAGCTAAAATAAACTACTGCGGGCTTTGTACTT----GAATAAGCTGCCTCTAG----TGTAGAATGCGA
ACATCATGCTTTGCATGGATGGCGGAAAAGGTCCCAAATTATT-------------------------------------
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-----------------------------------------------------------------------------
>chr3D_553
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------CCACT
CGGTTTCCTCTTCGGTTCGCGCCGGAACTGGAACTGGAGTCCATGCTTCCAAAACCATTACCATCAACC-------ATAG
AACATGCCAACTCAGTCCGGTCAAAAGGATGTACGTATATGCTACGTACACTGGAATTCCACGCCGCAG-ACGACGAAGC
ACAGCTGTTTCCCCCCAAGTGCTGTGTACGCACTCGCCACGATTGGTGGACGAGCTCGCCGTCGCCGGCGCGGGCGTAGC
TTACGGGCGATGTTTTGCGCCGAACCAGATCGTGACCTT-GGCGCGTATTCCATTCCACGTACGAGGCCAGACTAGCAAA
CGTCCACGTACCGTGCCAGCAGCGCTGGAAAACGGAAGCTGCTGAAGAGCTGGCACCGGC-----GACCGCGTGCCGTGC
CAAACTGCCTAATTACATTGCACACTAGCTTGTGTTGTGCGTATATAAATAGGGGGTGAAGGTTTGGTTCATTTCATGCA
AAACACGCGCACAC---ACGTACGTACCC-----------------------------C------TACTGGTGCAGAGTT
TGGT-----------------------------------TGCACGAAGACGTACTAGCGGA---GATGGCAGGGCATCGT
GCCTGCATGTTTTCGGTGGCGTTGGCCCTTCTTGGAGTGCTTCTGGGATCCATTCCTGCAGGTAATTCCCTTCCCTTCAT
ATTATCTATCGGGCAGTAC-------------------GTACGTGCGCTATCGGGC-----------AGTACTAACTCCA
GTTGCGCGTTTCACTCTTGGAAACACACAGCGGTGCAGTCCATCGGCGTGTGCTACGGCGTGAACGGCGACGGCCTGCCC
TCGGCCAGCGAAGTCGTGCAGCTCTACCAGTCCAACGGCATCACCGGCATGCGCATCTACTTCCCGGACGCCGACGCCCT
GCAGGCCCTCAGCGGCAGCAACATCGACCTCATCATCGACGTGGCC---AACGAGGACCTCGCCTCCCTCGCCTCCGACC
GCGCCGCCGCCACCGCCTGGGTCCAGACCAACGTGCAGGC---CCACCAGGGCC---TCAACATCAAGTACATCGCCGCC
GGCAACGAGGTGGGCGACCAGGGCGGCGACACGGGGAACATCCTCCCGGCCATGCAGAACCTCGACGCCGCACTCTCCGC
GGCCGGGC---TAGG---CGGCATCAAGGTGTCCACGTCGGTGTCGCAGGGCGTGACCGCCGG---CTACCCTCCCTCCC
AAGGCACCTTCTCCGCCGGCTACATGGGACCCATCGCGCAGTACCTGGCCACCACCGGCGCGCCGCTGCTCGCCAACGTT
TACCCCTACTTCTCGTACGTGGACAACCAGGCCCAGATCGACATCAACTACGCGCTCTTCACGTCGCCGGGC---ACCGT
GGTGCAGGACGGCGCCAA------CGCGTACCAGAACCTGTTCGACGCCCTCGTCGACACGTTCTACTCCGCGCTCGAGA
GCGCCGGGGCCGGGAGCGTCAACGTGGTGGTGTCGGAGAGCGGGTGGCCGTCGGCCGGCGGCACGGCGGCGACAACGGAC
AACGCGCAGACGTACAACCAGAACCTCATCAAACATGTCGGGCAAGGGACGCCCAAGAGGCCCAGTGCCATCGAGGCCTA
CGTGTTCGCCATGTTCAACGAGGACAAGAAGGGCCCGGCTGAGATCGAGAAGCACTTTGGGCTCTTCAAC---CCGGACA
AATCGCCGGCGTACCCCATCAGTTTCTAAACGGCCGGCGCACATCTATACTCGTACATACGTAGCAAGACAACAAACATT
TCCTTTTGCTCAGCTAAAATAAACTACTGCGGGCTTTGTACTT----GAAGAAGGTGCCTCTAC----TGTAGAATGCGA
GCATCATGCTTTGCATGGATGGCGGAAAAGGTCCCAAATTATTTGGACGACGAAAACGCCCAAATTCTTCACCGGAGACA
AAAAAATAAGAGGCACACCGGCAATACTGTGATCTTTCTTTTACCACTTCTTTTTGGTGAGCCCTAGGTGCCGGTCGGGT
AATAATTTCACTGGATCAACCGCTCCCTTGGCCGTCGGATCTGACATAAGTGACGATCCTAGGACGTC-----CTGGCAA
TACAAAACTCCCACATGCAACATATCTCTTTTATGTTTGCCAACAT----------------------------------
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>chr3A_562
--------------------------------------------------------------------------------
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----TTCTTCTTCGGTTCGCGCCGGAACTGGAACTGGTGTCCATGCTTCCAAAACCATTACTATCAACATTCAACAGTAG
AACATGCCAACTAAGTCCAGTCAAAAGGATGTACGTACATGCTACGTACACTGGAATTCCACGCCCCGG-ACGACGAGGC
ACAGCTGTTTCCCCC-AAGTGCAGTGTACGCACTCGCCGCGATTGGTGGACGAGCTCGCCGTCGCCGGCGCGCGCGTAGC
TTACGGGCGATGTGTTGTGCCGAACCAGATCGTGACCTT-GGCGCGTATTCCATTCCACGTACTAGGCCAGA---GCAAA
CGTCTACGTACCGTGCCAGCAGCGCTGGAAAACGG-----------GAGCTGGCTAGCAGTGGTGGACCGCGTGCCTTGC
CAAACTGCCTAATTACATTACATCCTAGCTTGCGTTGTTCGT--ATAAATAGGGGGTGAATGCTTGGTTCATTTCATGCA
AACCGCACGCACGTACGACGTACGTACCAGGTGCAGAGTTTTGGAAGATCTAGCTGCAC------TACTGGTGCAGAGTT
TGGT-----------------------------------TGCAGGAAGACGTACTAGTGGA---GATGGCAGGGCATCGT
GCCTGCATGTTTTCGGTGGCGTTGGCCCTTCTTGGAGTGCTTCTGGCATCCATTCCTGCAGGCAATTCCCTTCCCTTCAT
ATTATCTATCGGTG-------------------------------------------AGCAAGCTAGAGTACTAACTTCG
GTTGCGCGTTTCACTATTGG-AAAACACAGAGGTGCAGTCCATCGGCGTGTGCTACGGCGTCAACGGCGACGGGCTGCCC
TCGGCCAGCGAAGTCGTGCAGCTCTACCAGTCCAACGGCATCACCGGCATGCGCATCTACTTCCCGGACGCCGACGCCCT
GCAGGCCCTCAGCGGCTCCAACATCGGCCTCATCATCGACGTGGCC---AACGAGGACCTCGCCTCCCTCGCCTCCGACC
GCTCCGCCGCCACCGCCTGGGTCCAGACCAACGTGCAGGC---CCACCAGGGCC---TCACCATCAAGTACATCGCCGCC
GGCAACGAGGTGGGCGACCAGGGCGGCGACACGGGGAACATCCTCCCGGCCATGCAGAACCTCGACGCCGCCCTCGCCGC
GGCCGGGC---TCGG---CGGCATCAAGGTGTCCACGTCGGTGTCGCAGGGCGTGACCACCGG---GTTCCCTCCCTCCC
AAGGCACCTTCTCCGCCGGCTACATGGGTCCCATCGTGCAGTACCTGGCCACCACCGGCGCCCCGCTGCTCGCCAACGTG
TACCCCTACTTCTCGTACGTGGACAACCAGGCCCAGATCGACATCAACTACGCTCTCTTCACGTCGCCGGGC---ACCGT
GGTGCAGGACGGCGGCAA------CGCGTACCAGAACCTGTTCGACGCCCTCGTCGACACGTTCTACTCCGCGCTCGAGA
GCGCCGGCGCCGGGAGCGTCAACGTGGTGGTGTCGGAGAGCGGGTGGCCCTCAGCCGGCGGCACGGCGGCGACCACGGAC
AACGCGCAGACGTACAACCAGAACCTGATCAAACATGTCGGGCAAGGGACGCCCAAGAGGCCCAGCGCCATCGAGGCCTA
CGTGTTCGCCATGTTCAACGAGGATAAGAAGGGCCCGGCTGAGATCGAGAAGCACTTTGGGCTCTTCAAC---CCGGACA
AATCGCCGGCGTATCCCATCAGTTTCTAGAAGGCGGGA-CACATCCATACGCCTACGTACGTAGCAAGACAACAAACATT
TCC--TTGCTCAGCTAAAATAAACTACTGCGGGCTTTGTACTTCCTTGAATAAGCTGCCTCTAC----TGTAGAATGCGA
ACATCATGCTTTGCACCGATGGTGGAAAAGGTCCCAAATTATTTGGATGACGAAAGCGCTCAAATTGTTTAACGGAGACA
AAC-AATAAGAGGCACCCTGGCAATACTGTGATCTTTCTTTTACCACTTCCTTCTGTCGAGCCCTAGGTGCCGGTTGGGT
AATAATTTCACTGGATCAACCGCTCCCTTGGCCGTCGGATCTGACATAAGTCACGATCCTGGGACGTC-----CTGGCAA
TAGAGAACTCCCACATGCAACATTTCTGTTGTATGTTCGGCAACAT----------------------------------
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>chr3D_1223
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---------------------------CAGAGGTGCAATCCATCGGCGTGTGCAACGGGATGCTCGGCGACAACCTGCCG
TCGCCGGCCGACGTGGTGCAGTTCTACCAGTCCCAGGGCATCGGCGCCATGCGCATCTACGCGCCGGACCCCGAGACGCT
CCGGGCCCTCGACGGCACCGGCATCGACCTCATCATGGACGTGGGC---AACGGCGACCTCGCCGCCCTCGCCTCCGACC
CTGCAGCGGCGGCCGGCTGGGTCCGGGACAACGTGCTCGC---CTACCCGGGC---GTCCGCGTCAAGTACGTCGCGGCC
GGCAACGAAGTGGACG------GCGACGACACGCGGAACATCCTCCCGGCCATGAAGAACCTCAACGACGCGCTCGCCGC
GGCCGGCC---GCGG---CGACGTCAAGGTGTCCACCGCGGTCAAGATGAGCGTGCTCGCGTCCTCCTCGCCGCCCTCTG
ACGGCGCGTTCAAGGACGTGTACATGACGGACGTGGCCCAGCTGCTCAAGGCCACTGGCGCGCCGCTCCTCGCCAACGTG
TACCCCTATTTCGCCATAAAGGGCGACC---CCAACATCGACCTCAGCTACGCTCTCTTCCA---GCAGAGC---ACCAC
GACGGTGAGCG---ACAACGGCCTCACCTACATCAACCTCTTCGACGCTATGGTCGACGCGGTGTACACTGCGATGGAGA
AGGTGGGCGCAGCTGGCGTGCCCATCGTGGTCTCCGAGAGCGGGTGGCCGTCGGCAGGCGGCGTTGAGGCAAGCGTCGAA
AATGCGCAGACGTACAACCAGAACCTGATCAACCACGTCGGGAATGGAACGCCCAAGAGGCCCGGGCCGCTGGAGATGTA
CATCTTCGCCATGTTCAACGAGAACCAAAAGGACGGGGACGAGACGGAGAAGAACTTTGGGCTGTTCAACGGCCCCGACA
AGTCGCCGGTGTACCCTCTAAGTTTC------------------------------------------------------
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-----------------------------------------------------------------------------
>chr3B_1228
--------------------------------------------------------------------------------
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--------------------------------GTGCAATCCATCGGCGTGTGCTACGGCATCATCGCAAACAACCTCCCA
CCGCCGAGAGAAGTGGTGCAGCTCTACAGGTCCAAGGGCATCACCAACATGCGCATCTACTCCGTCCAGCTCCAGGCGCT
CGACGCGCTCCGCGGCTCCGGCATCAGCCTCATGCTCGGCACCACC---AATAACGACGTCGCCGCCCTCGCCGGCAGCC
TCTCCGCCGCCACCTCCTGGGTGCAGGCCCACGTAAAGCCCTACCACAGCGCTGGGGTGACCATCCGGTACATCGCCGTC
GGCAACGAGGTCACGG------GCGGCACCGCGCAGCGCATCCTCGCAGCCATGCGGAACCTCAACAAGGCCCTGGCAGC
AGCCGGTC---TCGGCGACGCCATCAAGGTGTCCACGGCGGTGAGGTTCGACGTGCTCAGTAACTCCTACCCACCCTCCG
CCGCCGTGTTCGCTCACCCATACATGGTCGACATCGCCCGGCACCTGGCCAGCACCAGCGCGCCGCTGCTCGCCAACGTG
TACCCGTACTTCGCCTACAGCAGCAACCCGAGGGACATCAAACTCAACTACGCGACGTTCCA---GCCGGGCGCGACGCC
CGTGAGGGACGCCCGCACCGGGCTCGTCTACACGAACCTCTTCAGCGCCATGGTCGACGCCATGTACGCCGCGCTGGAGA
AGGCCGGGGCGCCGGGCGTGAGGGTGGTGGTGTCGGAGAGCGGGTGGCCGTCCGCCGGTGGGCTCGGGGCGACGCCGGAG
AACGCGCGGGCGTACAACCAGGGCCTCATCAACCACGTGGCGCACGGCACGCCCAAGAAGCCTGGGCCATTGGAGGCGTA
CGTGTTCGCCATGTTCAACGAGAACCAGAAGCCCGGGGCGGAGACAGAGAGGCACTTTGGGCTCTTCTAC---CCCAACA
AAACGCCCGTGTACCCCATCAATTTC------------------------------------------------------
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>chr3D_1228
--------------------------------------------------------------------------------
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--------------------------------GTGCAATCCATCGGCGTGTGCTACGGCGTGATCGGCAACAACCTCCCC
TCCCGGAGCGACGTGGTGCAGCTCTACAGGTCCAAGGGCATCAACGGCATGCGCATCTACTTCGCCGACGGGCAGGCCCT
CTCGGCGCTCCGCAACTCCGGCATCGGCCTCATCCTCGACATCGGC---AACGACCAGCTCTCCAACTTCGCCGCCAGCA
CCTCCAACGCGGCGTCCTGGGTCCAGAACAACGTCCGGCCCTACTACCCGGCC---GTGAACATCAAGTACATCGCCGCC
GGCAACGAGGTCCAGG------GCGGCGCCACGCAGAGCATCGTCCCGGCCATGCGGAACCTCAACGCGGCCCTCTCCGC
CGCCGGCC---TGGG---CGCGATCAAGGTGTCCACCTCGATCCGGTTCGACGCGGTGGCCAACTCCTTCCCGCCCTCCG
CCGGCGTGTTCGCGCAGTCGTACATGACGGACGTCGCCCGGCTCCTGGCGAGCACCGGCGCGCCGCTGCTCGCCAACGTG
TACCCCTACTTCGCGTACCGCGACAACCCGCGGGACATCAGCCTGAACTACGCGACGTTCCA---GCCGGGC---ACCAG
CGTGCGTGACCAGAACAACGGGCTGACATACACAAGCCTGTTCGACGCGATGGTGGACGCCGTGTACGCGGCGCTGGAGA
AGGCCGGCACGCCGGGCGTGAAGGTGGTGATTTCCGA-----------------CGGGCGGGTTCGCGGCGTCGGTGGAC
AACGCGCGGACGTACAACCAGGGGCTGATCAACCACGTCGGCGGGGGCACGCCCAAGAAGCGGGAGGCGCTGGAGACGTA
CATCTTCGCCATGTTCAACGAGAACCAGAAGACCGGGGACGCCACGGAGAGGAGCTTCGGGCTCTTCAAC---CCGGACA
AGTCGCCGGCCTACAACATCCAGTTCTA----------------------------------------------------
--------------------------------------------------------------------------------
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>chr3D_1228
--------------------------------------------------------------------------------
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--------------------------------GTGCAATCCATCGGCGTGTGCTACGGCATCATCGCAAACAACCTCCCA
CCGCCGAGGGAAGTGGTGCAGCTCTACAAGTCCATGGGCATCACCAACATGCGCATCTACTCCGTCCAGCTCCAGGCGCT
CGACGCGCTCCGCGGCTCCGGCATCAGCCTCATGCTCGGCACCACC---AATAACGACGTCGCCGCCCTCGCCGGCAGCC
TGTCCGCCGCCACCTCCTGGGTGCAGGCCCACGTAAAACCCTACCACAGCGCCGGGGTGACCATCCGGTACATCGCCGTC
GGCAACGAGGTCACGG------GCGGCACCGCGCAGCCCATCCTGGCGGCCATGCGGAACCTCAACAAGGCCCTGGCGGC
GGCCGGCCTGGGCGG---CGCCATCAAGGTGTCCACGGCGGTGAGGTTCGACGTGCTCACCAACTCCTACCCACCCTCCG
CCGCGGTGTTCGCTCAGCCCTACATGGTCGACATCGCCCGGCACCTGGTCAGCACCAGTGCGCCGCTGCTCGCCAACGTG
TACCCGTACTTTGCCTACAGCAGCAACCCGAGGGACATCAAGCTCAACTACGCGACGTTCCA---GCCGGGCGCGACGCC
CGTGAGGGACGCCCGCAGCGGGCTCGTCTACACGAACCTCTTCAGCGCCATGGTCGACGCCATGTACAACGCGCTGGAGA
AGGCCGGGGCGCCGGGCGTGAGGGTGGTGGTGTCGGAGAGCGGGTGGCCGTCGGCCGGCGGGCTCGCGGCGACGCCGGAG
AACGCGCGGGCGTACAACCAGGGCCTCATCAACCACGTGGCGCACGGCACGCCCAGGAAGCCTGGGCCCATGGAGGCGTA
CGTGTTCGCCATGTTCAACGAGAACCAGAAGCCCGGGGCTGAGACAGAGAGGCACTTTGGGCTCTTCTAC---CCCAACA
AAACGCCCGTATACCTCATCAATTTCGTAGGAG-----------------------------------------------
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>chr3A_1228
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--------------------------------GTGCAATCCATCGGCGTGTGCTACGGCGTGATCGGCAACAACCTCCCC
TCCCGGAGCGACGTGGTGCAGCTCTACAGGTCCAAGGGCATCAACGGCATGCGCATCTACTTCGCCGACGGGCAGGCCCT
CTCCGCGCTCCGCAACTCCGGCATCGGCCTCATCCTCGACATCGGC---AACGACCAGCTCTCCAACATCGCCGCCAGCA
CCTCCAACGCGGCGTCCTGGGTCCAGAACAATGTCCGGCCATACTACCCGGCT---GTCAACATCAAGTACATCGCCGCC
GGCAACGAGGTGCAGG------GTGGCGACACGCAGAGCATCGTCCCGGCCATGCGCAACCTCAACGCGGTCCTCTCCGC
CGCCGGTC---TCAG---CGCCATCAAGGTGTCCACCTCGATCCGGTTCGACGCGGTGGCCAACTCCTTCCCGCCCTCCG
CCGGCGTGTTCGCGCAGTCGTACATGACGGACGTGGCCCGGCTCCTGGCGAGCACCGGCGCGCCGCTGCTCGCCAACGTG
TACCCCTACTTCGCGTACCGCGACAACCCGCGGGACATCAGCCTGAACTACGCCACGTTCCA---GCCGGGC---ACCAC
CGTGCGTGACCAGAACAACGGGCTGACCTACACATCCCTGTTCGACGCGATGGTGGACGCCGTGTACGCGGCGCTGGAGA
AGGCCGGCGCGCCGGGCGTGAAGGTGGTGATTTCCGAGAGCGGGTGGCCGTCGGCTGGCGGGTTCGCGGCGTCGGCGGAC
AACGCGCGGACGTACAACCAGGGGCTGATCAACCACGTCGGCGGGGGCACGCCCAAGAAGCGGCAGGCGCTGGAGACGTA
CATCTTCGCCATGTTCAACGAGAACCAGAAGACCGGGGACGCCACGGAGAGGAGCTTCGGGCTCTTCAAC---CCGGACA
AGTCGCCGGCCTACAACATCCAGTTCTA----------------------------------------------------
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>chr3A_1228
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--------------------------------GTGCAATCCATCGGCGTGTGCTACGGCGTGATCGCCAACAACCTCCCG
CCGGCGAACGACGTGGTGCAGCTCTACAGGTCCAAGGGCATCACCGGCATGCGCATCTACTTCGCCGACGCCAAGGCCCT
CTCCGCGCTCCGTAACTCCGGCATCAGCCTCATCCTCGACGTCGGA---AACGACCAGCTCGCCAGCCTCGCCGCCAGCA
CCTCCAACGCGGCGTCCTGGGTGCAGAAAAACGTCCGGCCATACTACCCGGCC---GTGAACATCAAGTACATCGCCGCC
GGTAACGAGGTCCAGG------GAGGCGCCACCCAGAGCATCGTGCCGGCCATGCGGAACCTCAACGCGGCTCTCTCCGC
CGCTGGGC---TCGG---CGCCATCAAGGTGTCCACCTCCATCCGGTTCGACGAGGTGGCCAAGTCCTTCCCGTCCTCCG
AGGGCGTGTTCGCGAATGCCTACATGACGGACGTGGCCCGGCTCCTGGCGAGCACCGGCGCGCCGCTGCTGGCCAACGTG
TACCCCTACTTCGCCTACAAGGACAACCCGCGGGACATCCAGCTGAACTACGCCACGTTCCG---GCCGGGA---CCCAC
GGTGCGGGACGACAAGAACGGGCTGACCTACACGTGCCTGTTCGACGCGATGGTGGACGCCGTGGTCGCCGCCCTGGAGA
AGGCCGGGGCGCCGGGGGTAAGGGTGGTGGTGTCGGAGAGCGGGTGGCCGTCGGCGAGCGGGTTCGCTGCGACGGCGGAC
AACGCGAGAGCCTACAACCAGGGACTGATCGACCACGTCGGCGGGGGCACGCCCAAGAGGCGTGGCGCGCTGGAGACGTA
CATCTTCGGCATGTTCAACGAAAACTTCAAGAGAGGGGAGCTCGTGGAGAAGCACTTCGGGCTGTTCAAC---CCGGACA
AGTCGCCGGCGTACCCCATCCAGTT-------------------------------------------------------
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>chr3D_1237
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-----------------------------------------ATCGGCGTCTGCTACGGCGTGGTGGCCAACAACCTCCCG
CCGGCTAACGAGGTGGTGCAGCTCTACAGGTCCAAGGGCCTCACCGGCATGCGCATCTACTTCGCCGACGCCAAGGCCCT
CTCCGCGCTCCGCGGCTCAGGCATCGCCCTCATCCTCGACGTCGGCGGCACCGACGTGCTGGCCAGCCTCGCCGCCAACG
CCTCCAACGCGGCGAACTGGGTCCGGGACAACGTGCGGCCCTACTACCCGGCC---GTGAACATCAAGTACATCGCCGCC
GGCAACGAGGTCCTGG------GCGGCGACACGCAGAACATCGTCCCGGCCATGCGGAACCTCAACGCGGCCCTCAATGG
CGCCGGCC---TCGG---CGCCATCAAGGTGTCCACCTCGATCCGGTTCGACGCGGTGACCAACACCTTCCCGCCGTCCA
ACGGCGTGTTCGCGCAGGCCTACATGACGGACGTGGCCCGGCTCCTGGCCAGCACCGGCGCGCCGCTGCTCGCCAACGTG
TACCCCTACTTCGCCTACAAGGACAACCCGCGGGACATCCAGCTGAACTACGCGACGTTCCG---GCCGGGC---ACCAC
GGTGCGGGACCAGAACAACGGGCTGACCTACACGTGCCTGTTCGACGCCATGGTGGACGCCCTGGTGGCAGCGCTGGAGC
GGGCCGGCGCGCCGGGGGTGAGGGTGGTGGTGTCGGAGAGCGGGTGGCCGTCGGCGAGCGGGTTCGCGGCGACGGCGGAC
AACGCGAGGGCGTACAACCAGGGGCTGATCGACCACGTCGGCGGGGGCACGCCCAAGAGGCCCGGCTTGCTGGAGACGTA
CATCTTCGCCATGTTCAACGAGAACTTCAAGACCGGGGAGCTGACCGAGAAGCACTTCGGGCTGTTCAAC---CCGGACA
AGTCGCCGGCGTACCCCATCCAGTT-------------------------------------------------------
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>SNPs
SSS---------SSS-----S------S-------S----------------------SS--S-S--SSSSSSS------
---------------S--SS-------------------------------S---S--S---S-----------------
-------S---------SS-------------------------------------S----S----------S-------
---S-------------S-----S-S-----------S----S-S---S-S-----------------S------S---S
-------S---S----SS-------------S---------S-----S--------S---------S-SS----------
-------S------------S--------------S-------S------------------------S-----------
-------------SSS----------------------------------------------------------------
---------------S----SS----S-----------------------------------------------------
----------------------------------------S---------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S--S---------------------------------
----------------------------------------------------------------------SS--------
-------------------------------------S------------------------------------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------S-----
-----------------------------------------S---------------S--S-------------------
--S-----------------------------------------------------------------------------
----------------------------------------------------------S---------------------
--------------------------------------------------------------------------------
----------------------------------S---------------------------------------------
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----------------------------------S---------------------------------------------
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-----------------------------------------S--------------------------------------
--------------------------------------------------------------------------------
----------S----------------------------------------------------------------S----
--S-----------------------------------------------SS-S-SS-SS-SSSSSSS------------
------------------------------------------------------------------S-------------
--------------------------S-----------S--------------------------S------S-------
----------------------S-S--------S-S------------------S-S------S----SSSSS-------
S---------S-----------------------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_582
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--GTTTCCTCTTCGGCTCGCAT----------------------------------------------------------
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>reverse_2697
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--------------------------------------------------------CCCTAGGCCGTCTTATGCTG----
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