>input_sequence_59114
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------ATGGCGGAGGCTGCACCGCTTTCCCCCCAC
CGCAGCCTCCCGGAAGAAATCTCCATCTGGGAGATCCTCGTCCGCCTGCCCCCCAAAGCCCTCCTCCGTTGTCGTGCCGT
TTGTCGCACCTGGCGCGGTGCCACCTCCACCCACGACTTCCTCCTTGCTCACCATGCCCGCCAGCCCGCCCTCCCCCTCT
TCTACGCCTCCAATTTCAAGTGCGACGGCGACCGCGTCAAGTCCCTAGACATCATTCCCTTCGACCACCGAGTAGGGATC
GCCGCCGCCGACCGGCTCCAGTCCGTCGCACGAA------TTGACCTCTCCTATCCCGGTCTGGAGATCTCCTGCGATGG
TCTCCTCGTCTTCTCCGTAGGCGAA------AACAGAAATTTGTCTGTCTACAATCCCGCAACTCGTCAATATGCTCCAC
TCCCACAGATTGCTGGCTTCATGTTACTGGGGATGTACCTGCACAGCCCAACCGGCGAGTACAGATTATTGTT-------
-----GTACTTGAGTGATGCAAATCTGGGACACA---------ATGGCTCCTATGTCTTTTCAGTAGGCTCCGACCAGCC
GCCAAGGTACAAAGGGTATCCCAATGCATTTGAATTGATGTTCACCAGACCCATTTTGTTCCGTGGTAGCCTGCATTGGC
AAATTCTAAA------GAGCGCGGGCAACATGTTAAAGGTATTCAACACGACCGTTGAGTCATTCCGGCAGATGCGTGCT
CCGCTTCTTCCTTACCCCGCTCACCTGTTTGAGATGGATGGAATGCTCAGCATGTTCAGCTTTGATGAGGCAACCAACAC
AACCATTGATATCTGGATGTCACAAGACTATGACAATGAGGTATGGGCCTTGAAATACCGGGTTAAATTACCAGTTGCAG
ATCTCACAGTGCGGTTTGGAAAGTTTGTTGAGTATTGGAATTTCATGGTCACTTCTAGGGATGGTGATGTGTCCATGCTG
GTCAAATTTGGTGAGTGGCTACTTCAGTTTGACATCAATGGCAAGTTTAGTGCCAGTTTCCATTTTAGAGGCCTTTTTCC
TGCTGAACATTGTCTCAAGCAAACTCTTGTTCAGCATACATTCTTTCCAATGCTACAGGGTTATGTTGTGAAAAATTCGC
CTTTCATCGGATGTGATAGCTGTCCAGTGAGGCAACGCTTCTAA------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>chr3A_1_TraesCS3A01G466600
CACCGCCCCGGTTGACTTGGCATAAAATCCTGAAGAAAATCTCTAGGTGCACCACAATGTGTACCTCATCAGAACCCCCA
GTAAATAACGTGTCGCATCCCTATTGGTTGGTTTTTCACTGATTGAAAAAAGCCAAAAAAACAGGGTAAAAGAAACCTGG
TCAGATTTAGTATATGTATAATGTATAAAGAAAAGATCTATATCAAAACTAGTATTTTTAATGTAAAAATATTTTGTACT
TGCATATTTTATAAACCAAAAGTATACATGTACATCGGACGATAGTCGTCGCAACAATTAAATAAGGGCATATTCCATCC
TTTAGAAAGTAAAAAAATTAAATAATTTCCAATTTAGCACAAATGTCTAGTAACAAAAAATAAACATGCTGGTGTGGATT
TTTTTTTCCTAA--TTTGTTACAATAGCACTTCAAGTACCAAAGGATCGCGTTCCTTTTTTGTGGTTTCATTTTAACTAA
AGTGGAATAGATGGAAATTGCTTTTTGTATAGAGATAGCGCGTCAAAATTGTGCTTGAAAATATTTAATGGAGATAAACT
TGAAGATTTTTGGAAAGTAA-GTTCTAGAAAGATTGCTCGGTCCAACTACAATACATATTAGATATTAATTAATTCATCA
CTTTGCATTTTCGCAATACATGTTTTTTTT-GCAACAGATAGTTCTTGGAAAAAATGTGTTGCTCATATGGTAAATTTTA
GAAACTTCTTTCCCTAACTATTTT-CTTAATTTAAT---TA-GGCCTGAACTTTAATTTTGCATCGGGCCCCCAAATTCT
CAG-TACGGCCCAGTGGCCATTCTCTCGTCTGATGGAACCCTAGGGATCAGATCCCTGGTGGTTTGTCTCAAAAAAAAAG
ATCCCTGGTGGTTCCCATATATATTCTATCTGCCCTAGAGCTCCATCGCCCCCGCCGTCACTTCCACTTCACACCACTCC
TCTTGCTTTGCTATCGAGATCCAGATTGAGCTCCCGGCCAGCCGACGACCATGGCGGAGGCTGCACCGCTTTCCCCCCAC
CGCAGCCTCCCGGAAGAAATCTCCATCTGGGAGATCCTCGTCCGCCTGCCCCCCAAAGCCCTCCTCCGTTGTCGTGCCGT
TTGTCGCACCTGGCGCGGTGCCACCTCCACCCACGACTTCCTCCTTGCTCACCATGCCCGCCAGCCCGCCCTCCCCCTCT
TCTACGCCTCCAATTTCAAGTGCGACGGCGACCGCGTCAAGTCCCTAGACATCATTCCCTTCGACCACCGAGTAGGGATC
GCCGCCGCCGACCGGCTCCAGTCCGTCGCACGAA------TTGACCTCTCCTATCCCGGTCTGGAGATCTCCTGCGATGG
TCTCCTCGTCTTCTCCGTAGGCGAA------AACAGAAATTTGTCTGTCTACAATCCCGCAACTCGTCAATATGCTCCAC
TCCCACAGATTGCTGGCTTCATGTTACTGGGGATGTACCTGCACAGCCCAACCGGCGAGTACAGATTATTGTT-------
-----GTACTTGAGTGATGCAAATCTGGGACACA---------ATGGCTCCTATGTCTTTTCAGTAGGCTCCGACCAGCC
GCCAAGGTACAAAGGGTATCCCAATGCATTTGAATTGATGTTCACCAGACCCATTTTGTTCCGTGGTAGCCTGCATTGGC
AAATTCTAAA------GAGCGCGGGCAACATGTTAAAGGTATTCAACACGACCGTTGAGTCATTCCGGCAGATGCGTGCT
CCGCTTCTTCCTTACCCCGCTCACCTGTTTGAGATGGATGGAATGCTCAGCATGTTCAGCTTTGATGAGGCAACCAACAC
AACCATTGATATCTGGATGTCACAAGACTATGACAATGAGGTATGGGCCTTGAAATACCGGGTTAAATTACCAGTTGCAG
ATCTCACAGTGCGGTTTGGAAAGTTTGTTGAGTATTGGAATTTCATGGTCACTTCTAGGGATGGTGATGTGTCCATGCTG
GTCAAATTTGGTGAGTGGCTACTTCAGTTTGACATCAATGGCAAGTTTAGTGCCAGTTTCCATTTTAGAGGCCTTTTTCC
TGCTGAACATTGTCTCAAGCAAACTCTTGTTCAGCATACATTCTTTCCAATGCTACAGGGTTATGTTGTGAAAAATTCGC
CTTTCATCGGATGTGATAGCTGTCCAGTGAGGCAACGCTTCTAAACGGCCTAGCGGTATCCTTATGAGCTACAATATCGA
GTTTGAGCCCGCAGGC--TTCTTTGTTGATGCATG--AAGTTGTGATCAGGAAGCTCTCACTGTTATGTGGTTGCGTGAA
ATCTATGCATGTTTTGGTACCAAATTACCAAGTCATTTTGGTGTGTGTCTGAAAGATGTGCTCCGGTCTGCCTCATGTCT
CGGCTATACTCCTATTTA------------------TTAGGTAGCAATCTACATGCCTCGTGTTTCTGTTTCTTGAACTG
GAGGATTGACTTTACCTTTTTTCTTGGTCTTC-GTTTTATTCCATGAAATTATGTACTGCTC-TTCTCAAAGATGAATTC
TTATTATCTAGCAATCTTGATGTGTCTCATGTTTCTAAGTTCTGTTCTAGCTGACCATTGAATGTGAAACTTGAATGTGG
CAGATTGATTATCCTCTCAATTTCTTAACTTGCTAATATCCTCATGAGCTGC--TATGTATAAAATGGGTCCACCTATGG
GCTGGCTAGTTTCTTTATTATGATCAAGAAGCTATCACTATTACATTGTTGCATAAATTTCGTGTGTGTGAACATCCTAT
TGGGCCGAATGGCTACCAGTTCTGTTGTGGCTGGTTATGAAATTAGGACATATTATCCTCTTTAATGACTGGAAAGTTGA
ACTTGGGTTTTTAAAGAGCTTGAAGAACTGCTCGTTGAAGTGCATGATTGCATTATAGTCAACTTAGAGAAATGTTCGTT
CATTCCTCTTCATGTATTCATTGCTTCTGGTTAGATACTTAGATGTTAAAAAGCAATGCTATAAACCTGTCTTTGCTGTT
GCGTTGTTTGTGATTAAGCTTATCATGGTCAGGCTGGGGTACAAGATTGTTTTCTCCTTTAGACTCTGTAACTACCAGCC
ATGTTCATTCCCTCTGATCAGTGCAAGACCGTCTCGAGTACCATTGGTCTCAAGCAGATTGTCTCAAGTTCACTCTGATC
ATTTGTTATCGGATGTGCCATTGCAGGATC
>chr1D_183
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------GTATAAAGAAAAGATCTAAATCAAAACTAGTATTTTTAATGTAAAAATATTCCGTGCT
TGCATTGTTTATGAACCAAAAGTATACATGTACATCGGACCATAGTCGTTGCAACAATTAAATAAGAACATATCACATCC
TTTAGAAAGTAAACAAATTAAATAATTTCCAATGTAGCACAAATGTCTAGTAACAAAAAATAAACATGCTGGTGTGGATT
TTTTTTTTCCTGACTTTTTTACAATAGCACTTCAACTACCAAAGGATCGAGTTTCTGTTTTGTGGTTTCATTTTAACTAA
AATGGAATAGACGGGAATT--GTTTTTGACAAAGATAGCACTTCCAAATTGTGCTTGAAAATATTTAATGGAGATAAACT
TGAAGATTTTTTGAAAGG-A-GTTCTAGAAAGATTGCTCGTTCCAACTAAAATACAGATTAGATATTTATTAATTCATAA
CTTTGCATTTTCGCAATACATGTTTTTTTT-GCAACA-----TTCTTGGAAAATTTGTGTTGCGCATATTTTAAATTTTT
AAAATATCTTTCCCTATCTATTTTTCTTAATTTAATTACTA-GACCTGAACTTTGATTTTGCACCGGGCCCCCAAGTTCT
CAGGTACGGCCC--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>chr4A_199
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------TAAATCAAAACTAGTATTTCTAATGTAAAAATATTCCGTACA
TGCATTGTTTATGAAC-AAAAGTATACATGTACATCGGACCATAGTCGTTGCAACAACTAAATAAGGACATATCCCATCC
TTCAGAAAGTAAACAAATTAAATAATTTCCAATTTAGCACAAATGCCTAGTAACATACA-------------TGTGGATT
TTTTTTTCCTGA--TTTGTCACAATAGCACTTCGACTACCAAAGGATCGTGTTCCTTTTTTGTGGTTTCATTTTAACTAA
AATGGAATAGACCGG-ATT--TTTTTATACAAAGATAGCACTTCAAAATTGTGCTTGGAAATATTTAATGGAGATAAACT
TGAAGATTTTTTGAAAGG-AAGTTCTAGAAAGATTGC----TCCAACTAAAATACATATTAGATATTTATTAATTCATAA
CTTTGCATTTTCTCAGTACATGTTTTTTTTTGCAACACATAGTTCTTGGAAAATTTGTGTTGTGCATCTGGTAAATTTAA
AAAACTTTTTTCGCTAACTATTTTTCTTAATTTAATTACCAGGGCCTGAACTTTGATTATGCGCCGGGCCCCCAAATTCT
CAAGTACGGCCC--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>chr3D_265
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------TACATGTACGTCGGACCATAGTCGTTGCAACAATTAAATAAGGGCATATTCCATCC
TTTAGAAAGTAAACAAATTAAATAATTTCCAATTTAGCACAAATGTCCAGTAACAAAAAATAAACATGCCGGTGTGGATT
TTTTTT-CCTGA--TTTGTTACAATAGCAGTTCAACTACCAAAGGATCGCGTTCCTTTTTTGTGGTTTCATTTTAACTGC
AGTGGAATAGATGGAAATTGCTTTTTTTACAGAGATAGCACTTCAAAATTGTGCTTGAAAATATTTAATGGAGATAAACT
TGAATATTTTTTGAAAGG-AAGTTCTAGAAAAGTTGCTCGGTCCAACTAAAATACAGATTAGATATTAATTAATTCGTCA
CTTTGCATTTTCGCAATAAATGTTTTTTTT-GCAAGAGATAGTTCTTGGAAAAAATGGGTTGCACATATGGTAAATTTTA
AAAACAACTTTCCCTAACTATTTT-CTTAACTTAAT---TA-GGCCTGAACTTTGATTTTGCATTGGGCCCCCAAATTCT
CAGGTACGGCCCTGTGGCCATGCTCTGGTCTGATGGAACCCTAGGGATCAGATCCCTGGTGGTTCCCGTATATATATAT-
----------------ATATATATCCTATCTGCACTAGAGCTCCATCGCCCCCGCCGTCACTTCCACTTCACACCATTCC
TCTTGCTTTGCTATCGAGATCCAGATTGAGCCCCTGGCCAGCCGGCGACCATGGCGGAGGCTGCACCGGTTCCCCTCCAC
CGCAACCTCCCGGACGAAATCTCCATCTGGGAGATCCTCGTCCGCCTGCCCCCCAAAGCCCTCCTCCGCTGTCGTGCCGT
CTGTCGTGCCTGGCGCGGTGCCACCTCCACCCACGACTGCCTCCTCGCTCACCACGCCCGCCAGCCCGCCCTCCCCCTCT
TCTACGCCTACAATTTCAAGTGCGACGGAGACCGCGTCAAGTTCCTAGACATCATTCCCTTCGACCACCGAGTAGGGGCC
GCCGCCGCCGACCGGCTCCAGTCCGTCGCGCAAA------TTGACCTCTCCTATCCTGGTATGGAGGTCTCCTGCGATGG
TCTCCTCGTCTTCTCCGTAGGCGAA------AACAGAAATTTGTCCGTCTACAATCCGGCAACTCGTCAATATGCTCCAC
TCCCACAGATTGCTGG-TTCATGTTGCTGGGGATGTACCCGCACAGCCCAACTGGCGAGTACAGATTATTGTT-------
-----GTACTTGAGTGATGCAAATTTGGG---------ACACGATGGCTCCTATGTCTTTTCATTAGGCTCCGACCAGCC
GCCGAGGTACAAAGGGTATCCCAATGCATTTGAATTGATGTTCACCAGACCCATTTTGTTCCGTGGTAACCTGCATTGGC
AAATTCTAGA------GAGCGCGGGCAACATGTTAAAGGTATTCGACACCACCGCTGAGTCGTTCCGGCAGATGCGTGCT
CCGCCTCTTCCTTACCCCGCTCACCTGTTTGAGATGGATGGAATGCTCAGCATGTCCAGCTTTGATGAGGCAACCAACAC
AACCATTGATATCTGGATGTCACAAGACTATGACAACGAGCTATGGGCCTTGAAATACCTGGTTAAATTACCAGTTGCAG
ATCTCACTGTGCAGTTTGGAAAGTTTGTTGAGTATTGGAATTTCATGGTCACTTCTAGGGATGGTGGTGTGTCCATGCTG
GTCAAATTTGGTGAGTGGCTACTTCAGTTTGACATCAATGGCAAGTTGATTGCCAGTTTCCATTTTAGAGGCCTCGTTCC
TGCTGAACATTGTCTCAAGCAAACTCTTGTTCAGCATACCTTCTTTCCAATGCTACAGGGTTATGTTGTGAACAATTCAT
CTTTCATCGGAT--GTTAGCTGTCCAGTGAGGCAGCGCTTCTAAATGGCCTAGCGGTATCCTTATGAGCTACAATATCGA
GTTTGAGCCCGCAGGCTTTTCTTTGTTGATGCATGTCAAGTTGTGATCAAGAAGCTCTCACTGTTATGTGGTTGCCTGAA
ATCTATGCATGTTTTGGTACCAAATTACCAAGTCATTTTGGTGTGTGTTTGAAGGATGTGCTCCGGTCTGCCTCATGTCT
CTGTTGTACTCCTATTTA------------------TTAGTTAGCAATCTACATGCCTCATGTTTCTGTTTCTTGAACTG
GAGGATTGACTTTACCTTTTCTCTTGGTCTTC-GTTTTA---CATGAAATTATGTACTGCTC-TACTCAAAGATGAATTC
TTATTATTTTGCAATCTTGATGTGTCTCATGTTTCTAAGTTCTGTTCTAGCTGACCACTGAATGTGAAAATTGAATGTGG
CAGATTGATTATC--CTCAATTTCTTAACTTGCTAATATACTCATGAGCTGC--TATGTATAAACTGGGTCCACCTATGG
GCCGGCTAGTTTCTTTATTATGATCAAGAAGCTATCACTATTACATTGTTGCATAAATTTCGTGTGTGTGAATATCCTAT
TGGGCCGAATGGCTACCAGTTCTGTTGTGGTGGGTTATGAAATTAGGACATATTATCCTCTTTAATGACTGGAAAGTTGA
ACTTGGGTTTTTAAAGAGCTTTAAGCACCGCTCGTTGAAGTGCATGATTGCATTATAGTCAACTTAGAGAAATGTTCGTT
CATTCCTCTTCATGCATCTGG-----------------TTAGATGTTAAAAAGCTATGCTATAAATCTGTCTTTGCTGTT
GCGTTGTTTGTGATTAAGCTTATCATGGTCAGGCTGGGGTACAAGATTGTTTTCTCCTTTAGACTCTGTAACTACCAGCC
ATGTTCATTCCCTCTGATCAGTGCAAGACCGTCTCGAGTACCATTGGTCTCAAGGAGATTGTCTCAAGTTCACTCTGATC
ATTTGTTATTGGATGTGCCATTGCAGGATC
>chr3D_922
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------CCGCCGTCACTACCACTCCACCGCTCTCT
TCAGAT----CTAACGAGATCTAGGGCGTGAGCTTCCG--GCCGGCGACCTTGGCGGAGGACACACCACCTCTCCTTCAC
CGTTGCCTCCCGGACAAGATCTTCATCCAGGAGATCCTCGTTCGCCTGCCCCCAAA-GCCCTCCTCCGCTGTTGCGCCGT
TTGCCGCGCCTGGCGCGGCGTCACCTCCACCCGCGACTTCCTCCTCACTCGCCACGCCCGCTAG-CCCCCCTCCCCCTCT
TCTACGCCTACAATCAGAAATGCGCCCGCGGCCGTATCAAGTCCCTAGACATCATTCCCTTCGACCACCGAGTAGGGGTC
ACTGCCGCCGACCGGCTCCAATCCGTCGCGTGAA------TTGGCCTCTCCTATCCCGGTCTGGAGGCCTCCTGCGACAG
TCTCCTCGTCCTCTCTGAAGGTGAAGGCAACAACAAAAATTTGTTCATCTGCAATCCGGCAACTCGCCAGTATGCTCCAC
TCCGACAGCTTTCTGGCTTCATGTTTTTGGGGATGTACCCGCACAGCCCAACCGGCGAGTACATATTATTGCT-------
-----GTACTTTAGCAATGTAAAACTGGCACCTGG---------TGGCTCCTATGTCTTTTCATTAGGCTCCGGCCAGCC
GCCGAGGTACACAGGTTATCCTGATGCATTTGAATTAATGTTCACCTGACCCATTTTGTTCCGTGCTAACCTGCATTGGC
AAATTCTAGA------GAGCGCAGGCAACATGTTAAAGGTATTTGACACCACTGCTGAGTCATTCCGACAGATGCGTGCT
CTGCTTCTTTCTTACCCCGCTCACCTGTTTGAGATGAATGGAATGCTCAGCATGTCCATCTTTAATGAGGAAACCAACAC
AACCATTAATATCTGGATGTCACATGACTATGACAACGAGGTATGGGCCTTGAAATACCAGGTAGAATTGCCGGTTGCAG
ATCTC-----GCAGTTTGGAAAATTTGTCGAGTATTGGAATTTGGTGGTCGCTTCTAGGGACGGTG-TGTGTTCATGTTG
GTCAAATTTGGCGAGTGGCTACTTCAGGTTGATATCAATGGCAAGTTGATTGCAGGTTTCCATTTCAGAGGCCTCATTTC
TACTGAACATCGTCTCAAGCAAACTCTTGTTCAGCATACCTTCTTTCCGACGTTAAAGGGTTGTGTTGTGAACGATTCAC
CTTTCATCTGATCGGATAGCTACCTAGTGAGGTGGCGCTTTTGAACGGCCTATCAGTATCCTTATGAACTGCAGTATCGA
GTTTGAGCCCGGAGGC--TTCTTTGTTGATGCATGTAAAGTTGTGATCAAGAATCTCTTGATGTTATGTGGTTGCGTGAA
ATCTATGCATGTTTTGGTACCAAATTACCAAGTTGTTCTGGTGTGTGTTTGAAAGATGTGCTCCGGTCTGCCTCTTGTCT
CTGTTGTACTCCTCTTTATTAGTTTGCAATCCTATTTTAGTTAGCAATCTGCATGCCTCATGTTTCTGTTTCTTCAACTG
AAGGATTGACTTTGCCTTTTGTCTAGGTCTTTTGTTTTATTCCCTATAATTATGTATTGCCTGTTCTCAAAGATGAATTC
TTATTATTTAGCAATCTTGACGTGTCTCATTTTTCTATGTTTGGTTCTAGGCTTCTAGCTGACC-----ATTGAATGTGG
TAGATTGATTATCCTCTCAATTTCTTAACTTGCTAATATCCTCACGAGCTGCAATATGTATAAGTTGGGTCCACCTATGA
GCTAGTTAGTTTCTTTATTATGATCAAGAAGCTATGACTATTACATTGTTGCATGAATTTTGTGTTTCTGAATATCCTTT
TAGCCTGAATGGCTACCAGTTCTGTGGTAGCCGGTGATGAAATTAGGGCTGATTATCCTTTTTGATGATTAGCAAGTTGA
ACCTTGGGTTTCAAAGAGCTTGAAGCACTACTCGTTAAAGTGCATGAATTCATTATAGTCATCTT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>chr3A_1027
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------CCAA
CGCAGCCTCCCCGACGAGATCTCAATCTGGGAGATCCTCGTCCGCCTCCCTCCCAAAGCTCTCCTCCGCTGCCGCGCCGT
GTGCCGCGCCTGGCGCAGCGCCACCTCCACCCGCGACTTCCTCCTTGCTCACCACGGACACCAGCTCACCCTTCCCCTCC
TCTACGGCTGCACCAACCTCGGCGTCCAAGGCGAGG------TCCTAGACATCATTCCCTTCGACCACCGCCCAGGGCTA
GCCGCCGCCGACCAGCTTCAGTCCGTCGCGCGACTTGGCCTTGGCCTCTCCTATCCTTGTGTGGAGGCCTCCTGCGACGG
TCTCCTCCTCCTCTCCCTAGGCCGGAGAGACTTC---------TTCGTCTGCAATCCGGCAACTCGTCAGTATGCTCCAC
TCCAACAAATTTATGCCTACGTGCTGCTGGGGATGTACCCGCACAGCCCAACCGGCGAGTACAGATTATTGCTCTACTGG
GACGAGGATTTGATTTATCCAGATCTGGCACCTGGCACACAAGATGGCTCC--TGTCTTCACAATAGGCTCCGGCGAGCC
GCCCAGGTACACAGGGTACCCTGATTCAGGCATATTGATGTTTAGCAACTCCATTTTGTTTCATGGTAGCCTGCATTGGC
ACATAGACAAGGATGCGAGCACAAGCAACATGATAATGTTATTTGACACCACCTCTGAGTCCTTCCGGCAGATGCGCGCT
CCGGTTGTTCCTAGCCACGCTTCCCTGTTTGAGATGGATGGAATGCTCGGCATGTCCAGCTTTAATCATGCAGC---CAC
AACCATTGATATCTGGATGTCACAAGACTATGATAGCGAGGCCTGGGCCTTGAAATACCGTGTTGATTTGCCGGTTACAG
ATCTCACTGCGCAGTTTGGAAAGTTTACCGAAACTTGGAATTTGGTGGTCACTTGTTGGAACGGTGATGTGCTCATGCTG
ATCAAATTTGGTGAGTGGCTACTTCAGGTTGACGTGGATGGCAAGTTGGTTGCCAGTTTTCACCGCAAATTAGTCCGTTT
TACTCAATTCCAACTCAAACAAACTCTTGTTCCACATACCTTCTTTCCGACACTAGCGGGTTATGCTGTGAACACTTTGC
CTTTCAT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS------------------S--------------------------------SS-----
-----SS-----S---------------------------S--------S------------------------------
-------------S------------------------------------------------------------------
----------S------------------------S--------------------------------------------
--------------------------S--S---------S-S--------------------------------------
-----------S-----SS------------------------------S------------------------------
---------------------------------------------------------------S----------------
S-----------------------------------------------------S-------------------------
------------S--------S----S-------------------------------------SSSS-SS-S-S-S-SS
SSSSSSSSSSSSSSSS--------S--------S----------------------------------------------
-------------------------------S--S---------S--------------------------S---S----
--------------S-----------------------------------------------------S-----------
-------S----------------------------------------------S-------------------------
---------S-------------------------------------------------------------------S--
-----------------------------S------------------------------------S-------------
---------------------------------------------S-----------S----------------------
-------------------------S-------------S----------------------------------------
-------------------------------SSS-----------------------------S----------------
---S----------------------------------------------------------------------------
--------------------------------------------S----S----S-------------------------
-------------------------------------------------------S------------------------
------------------------------------S-------------------------------------------
-------S----S-------------------------------------------------------------------
-----------------------------------------------S-S------------------------SS----
---------------------------------------S--------------------------------S-------
------------SS--------------------S---------------------------------------------
-------------------------------------------------S------------------------------
------------------------------------------------S-------------------------------
-S-S-S----------------------------------S------------------S--------------------
--------------------S-----------------------------------------------------------
-------S-------------------------------------------------S-----------S----------
----------------------------------------------------------------S---------------
------------------------------------------------------------------------S-------
-------------------------------S------------------------------------------------
-------------------------S------------------------------------------------------
--------------S--SSSSSSSSSSSSSSSSSSSSS----------------S----------S--------------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
---------S--------------------
>forward_82
--------------------------------------------------------------ACCTCATCAGAACCCCCA
GT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>reverse_1347
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------ATCTCCTGCGATGG
TCTCCT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>forward_107
--------------------------------------------------------------------------------
-------ACGTGTCGCATCCCTATTGG-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>reverse_1466
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------ACTGGGGATGTACCTGCACA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>forward_108
--------------------------------------------------------------------------------
--------CGTGTCGCATCCCTATTGGT----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>reverse_1816
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------TCAGCTTTGATGAGGCAACCA----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>forward_1347
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------CTCCTATCCCGGTCTGGAGA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>reverse_3026
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------CCTGTCTTTGCTGTT
GCGTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
