>input_sequence_59096
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-----------------------------------------------------------------ATGTCGCGGTTGGCG
TCGGCGCTGCTTGCCCTGGCGACGGCGGCCGCGGTGGCGGTGGCGGTGGCGGCGCGGCCGGCGGTGGACGTGACCGCGAC
GGTGGCCTTCGGGGAGGGCTACACGCCGCTCTTCGGCTTCGACAACATCCTCCGCTCCGCCGACGACCGCACCGTCAGCC
TCCTCCTCGACCGCACCACCGGTACGTACGTACGAGTGCGGTCATCCATCCATCCTCCGTCCTCCCCGGCTGGCCGGCCG
GCCGTACGTTCGTGGCATGCGCGCGCATGGCG--GCTTGGTTTCCTCCGTTAATTTCTGGGGCGTTTGTCTGTTTTTCAT
-----GCAACGTACGTCAGTTATCAGTTAATGGTAATTAAAAT----GGGCAGGGTCGGGGTTCATCTCGTCGGCCATGT
ACCAGCACGGCTTCTTCAGCGCGTCCATCAAGCTGCCGTCCGACTACACGGCGGGGGTGGTGGTGGCGTTCTACACGTCC
AACGGCGACGTGTTCCCCAAGACGCACGACGAGCTGGACTTCGAGTTCCTGGGCAACATCCGGGGCAAGCCGTGGCGGAT
GCAGACCAACATGTACGGCAACGGCAGCGTCAGCCGGGGCCGGGAGGAGCGCTACGTGCTGCCCTTCGACCCCACCACCG
AGTTCCACCGCTACTCCATCCTCTGGGCGCGCGACGCCGTCGTCTTCTACGTCGACGACGTGCCCGTGCGCCACCTGCGC
CACGCCCGCGCCGGCCGCGACTTCCCGGCCAAGCCCATGTCGCTCTACGCCACCGTCTGGGACGCTTCCAACTGGGCCAC
CTCCGGCGGCCGCTACCGCGTAGACTACCACTACGGGCCCTTCGTCGCCTCCTTCACCGACCTCGCCCTCGCCGGTTGCC
GCGCCTCCTCCCCCACGGAAGAAGGCTGCGCCGACGCGCTGGCCGCGTCCGACCCCGCCGTCATGACGCTCGCCAAGCAG
CAGGCCATGCGCCAGTTCAGGGAGCGCAACATGGTCTACTCATACTGCTACGACACCAGGCGCTACCCCGTGCCCTTCCC
GGAGTGCGACCTCGTCGAGTCGGAGCGGAGCAGGTTCAAGGACAGCGGCCACCGGCTCGCGCTCAGGCGCCGCCGCGTCG
GCCGCCGGCCGC---------------CCAACAAGGCCGACATGTAG---------------------------------
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>chr6A_1_TraesCS6A01G088000
AACTTGGATGGCCTTCCATAGGCTTTAGTTTGAGCCTGAAGAGCGGTACCCTCGTTCAGCAATTTCCGCAGC---AACGA
CCTCGCCGTTCCCATTAGGGAATGC--ATGGTGCTATTTTAGGAGTGCCACCTAGGATAAATGATGAAAATAATGAGGTG
GAAAGGAGAGAAATTATAAAAAAAGACTTGTCTTCTCTTATTTAAGAAATGATTTTTTAGCACAATATGTCTCATCATAT
TTTTAGGAATATCTAATTATTAAAGATAAGACTAAAAGATAACCCATTGTAGACATGTTTTTTTGTCATCTCTAAATTAC
ATGCAAGACTTAAGATAAAACTATCTTATCAACCATTGTATAAG---------ACCCCACCCTCCTTATCCCGTGTCCGT
AAGGAAAGATTGGTCGACATTGATTTTGATT----ATTTGGCAATTCTCTTGAGCACGGCATACCCGCCCAGTTCATTT-
--TTTTTGCCAGGATTTACCGTGCTCTGAGAAGGAATTTGCCATCCTCGAGACAATGTAAATTACAAGCTCGCAAAAAGA
AAATAGACAATGTAAATGAGAAACGTCCATTTTGCCATGCCTTCCCAGGAACGTCAGCACAACAGCGTTCCCATTTATTT
ATTTTCTCCCCTGAATCCGTCCCTGGCCAACTGTTGAGATAGTTTCCTTGTACGCGTCCGTTTCCAAAACAATTTCCATC
CGCGCGTCTGCATGCACGCCATGAATGGATAAAAGCTAAGCAGACCTAAGCCAAAGCTAACTCCTCCTATTTCTCCGGCG
GTCACGGGGCCGTCTTCCGGCCTCCCTGCACCGTTTCTCCACCTCCGCCTC---AATTTGTCACCCACCCAAGAATAAAC
CGACCCGAAAACAGCCTGAGTGAATAATTAGGCAAGCACCAAAACTGAGGATATACCAGGAAATAGCTTTAGTATAGTTC
CA-TCCAAGCAGAGGAGAGGGGCGGAGAGGGGATCGATCGATCGATCGCTCTCGCGGCCGGCGGCATGTCGCGGTTGGCG
TCGGCGCTGCTTGCCCTGGCGACGGCGGCCGCGGTGGCGGTGGCGGTGGCGGCGCGGCCGGCGGTGGACGTGACCGCGAC
GGTGGCCTTCGGGGAGGGCTACACGCCGCTCTTCGGCTTCGACAACATCCTCCGCTCCGCCGACGACCGCACCGTCAGCC
TCCTCCTCGACCGCACCACCGGTACGTACGTACGAGTGCGGTCATCCATCCATCCTCCGTCCTCCCCGGCTGGCCGGCCG
GCCGTACGTTCGTGGCATGCGCGCGCATGGCG--GCTTGGTTTCCTCCGTTAATTTCTGGGGCGTTTGTCTGTTTTTCAT
-----GCAACGTACGTCAGTTATCAGTTAATGGTAATTAAAAT----GGGCAGGGTCGGGGTTCATCTCGTCGGCCATGT
ACCAGCACGGCTTCTTCAGCGCGTCCATCAAGCTGCCGTCCGACTACACGGCGGGGGTGGTGGTGGCGTTCTACACGTCC
AACGGCGACGTGTTCCCCAAGACGCACGACGAGCTGGACTTCGAGTTCCTGGGCAACATCCGGGGCAAGCCGTGGCGGAT
GCAGACCAACATGTACGGCAACGGCAGCGTCAGCCGGGGCCGGGAGGAGCGCTACGTGCTGCCCTTCGACCCCACCACCG
AGTTCCACCGCTACTCCATCCTCTGGGCGCGCGACGCCGTCGTCTTCTACGTCGACGACGTGCCCGTGCGCCACCTGCGC
CACGCCCGCGCCGGCCGCGACTTCCCGGCCAAGCCCATGTCGCTCTACGCCACCGTCTGGGACGCTTCCAACTGGGCCAC
CTCCGGCGGCCGCTACCGCGTAGACTACCACTACGGGCCCTTCGTCGCCTCCTTCACCGACCTCGCCCTCGCCGGTTGCC
GCGCCTCCTCCCCCACGGAAGAAGGCTGCGCCGACGCGCTGGCCGCGTCCGACCCCGCCGTCATGACGCTCGCCAAGCAG
CAGGCCATGCGCCAGTTCAGGGAGCGCAACATGGTCTACTCATACTGCTACGACACCAGGCGCTACCCCGTGCCCTTCCC
GGAGTGCGACCTCGTCGAGTCGGAGCGGAGCAGGTTCAAGGACAGCGGCCACCGGCTCGCGCTCAGGCGCCGCCGCGTCG
GCCGCCGGCCGC---------------CCAACAAGGCCGACATGTAGCGTGCACGCACCTAGCAGCCATATCTTCTCTTC
TCTTCTCTTGTGTTCATTAATTAGGGACGGAGATTTGGGTTGGTTGATTATGTATTACTCGGCGGAATTTGGCAGTAGCA
TCCCAAAGCGGAATTTGGGTGACACGTACGGTTACTCGGCGGGCACATTGCATGAAAACGTACG-ACGACCTACACGGTG
TGCTCCCTTCCTTCCTCC-----TCTGCTTTG----CTCTTCTCCCCCACCGGGGATGG----GCTCCGTTTCAGGCGCC
GTGGGG-AAAAACGTACGTTCATTCTGGATTTTCTTTGAAAAGCTACGTCGGACTAATTTTTTAAGGGTGTGGCTAGGTT
TTAGTTGACCAAGATTTAACCAAGTCTCAGTCAAGTGAC-TAATATATAA-------AAAGAAAAAGAAGCTAAAATGAA
AATTTTGCAAAGATTTTCGCGCAAGAT----CGAACGAATATAGTATTCACTGTTGATTGAGACTTCGGCGTAATTTTTT
TTTTGAAAGTTGAACTACATTATTGAAAGGTCAACACTGCTTTTGGGTGGCTAGCTTTCATCTAG---ATGGGAATTAAG
TAAATCACATCTAGCTCGTACATCATTTCATTTGGCGCGAATATCTGTGTGAATTTTTTT-AGATGTGACTTCATTGTTA
T-----------------------------------------------------------AACCGTCGGAGTTTCCTTCT
AAAAAGTTTTGGAAGCCTGGTTTTATTTTAAAAGGTCATGCTTGCAAACATACCACTGCTGAAATAGTTTTTCC------
--------------------------------------------CTAAATCAACATAGCAT----AATGATGCGAAAGCC
CGTTGAGATCATCAAATGACATCTCCACCATCGCATCATCTTGAAGCCTAGTCTATTTTGGCTATCGTGCGGCCAAGCCT
TCATATATTACGCTTGTGTTACATGTGTTTGACTCCAACACCTCA-------CATAGTCTAATCAAGTTGTGGCCTTTTA
CAAATATATCGGATACCAATTCCAATAAACTTCATCTTAACGAACATGTCTTTGTCATCTTGAAGTTGTCAGCTTCAC
>chr6B_25
------------------------TTAGTTTCGGCCCGAAGAGCGGTACCCTGGTTCAGCAATTTCCCAGCAGCAAACGA
CCTTGCCGTTCCCATTGGGCATATATAATGGTGCTATCTTAGGAGTGCCACCTAGGATAAATGATGA---------GGTA
GAGGAGAGGAAAGTTGAAAGAAAAGA------------TATTTAAGAGATGATCTGTTAGCATAATATGTCTCATCACGT
TTTTAGGAATATCTAGTTATTGAAGATATGGCTAAGAGATGACCCACTGTAGACAT-TTTTTTTATCATCTCTAAATTAC
GTGGATGACTTAAGATAAGACTATCTTATCAACCATTGTACATGCCTTACATCACCCCGCACTCCTTCTCCCGTGTCTGC
AAAGAAAGATGGGTCGATCTTGATTTTGATTGATTATTTGGTAAATTTCTTGAGCATGGCATATCCGCCCAGTTCATTTT
TATTTTGGCCAGGATTTCCCGTGCTTTGAGAAGGAATTTGTCAACCTCGAGACAATGTAAATGAGAAGTTCCAAAAAAA-
----AGACAATGTAAACGAGAAACGTCCATTTTGCCATGCCTTCCCAGGAACGTCAGCACAATAGCATTCTCATTTTTCC
----CCTCCTCTGAATCCGTCCCTGGCCAGGTGGCGAGATAGTATCCTTGTACGCGTCCGTTTCCGAAATAATTTCCATC
TGCGCGTCTGCATGCGCGTCATGAATGGATAAAAGCTAGCAGACCCTAAGCCTAAGCTAACTCCTCCTATTTCTCCGGCG
GTCACGGGGCCGTCTTCCGGCCTCCCTGCACCGTTTCTCCACCTCCGCCTTATTAATTTGTCACCCACCCAAGAATAAAC
CGACCCGAAAACAGCCTGAGTGAATAATTAGGCAAGCACCAAAACTGAGGATATACCAGGAAATAGCTTTAGTATAGTCC
CT-TGCAAGCAGAGGAGAGGACCGGAGAGGGGATCGACCGATCGATCGCTCTCGCGGCCGGCGGCATGTCGCGGTTGGCG
TCGGCGCTGCTGGCCCTGGCGACGGTGGCCGCGGTGGCGGTGGCGGTG------CGGCCGACGGTGGACGTGACCGCGAC
GGTGGCCTTCGGGGAGGGCTACACGCCGCTCTTCGGCTTCGACAACATCCTCCGCTCCGCCGACGACCGCACCGTCAGCC
TCCTACTCGACCGCTCCACCGGTACGTACG----AGTGCGGTCGTCCATCCATCCTCCATCCTCCCCGGCTGACCGGCCG
GCCGTACGTTCGTGGCATGCGCGCGCATGGCG--GCTTGATTTCCTCCGTTAATTTCTGGGGCGTTTGTCTGTTTTTCAT
TTCATGCAACGTACTACTACG-TCAGTTAATGGTAATTAAAAT----CGGTAGGGTCGGGGTTCATCTCGTCGGCCATGT
ACGAGCACGGCTTCTTCAGCGCGTCCATCAAACTGCCGTCCGACTACACGGCGGGGGTGGTGGTGGCCTTCTACACGTCC
AACGGTGACGTGTTCCCCAAGACGCACGACGAGCTGGACTTCGAGTTCCTGGGCAACATCCGGGGCAAGCCGTGGCGGAT
GCAGACCAACATGTACGGCAACGGCAGCGTCAGCCGGGGCCGGGAGGAGCGCTACGTGCTGCCCTTCGACCCCACCACCG
AGTTCCACCGCTACTCCATCCTCTGGGCGCGCGACGCCGTCGTCTTCTACGTCGACGACGTGCCCGTGCGCAACCTGCGC
CGCGCCCGCGCCGGCCGCGACTTCCCGGCCAAGCCCATGTCGCTCTACGCCACCGTCTGGGACGCCTCTAACTGGGCCAC
CTCCGGCGGCCGCTACCGCGTCAACTACCAGTACGGGCCCTTCGTCGCCTCCTTCACCGACCTCGCCCTCGCCGGCTGCC
GCGCCCCCTCCCCCACGGAAGAAGGCTGCGCCGACGCGCTGGCCGCGTCCGACCCCGCCGTCATGACGCTCGCCAAGCAG
CAGGCCATGCGCCAGTTCAGGGAGCGCAACATGGTCTACTCCTACTGCTACGACACCAGGCGCTACCCCGTGCCCTTCCC
GGAGTGCGACCTCGTCGAGTCGGAGCGGACGAGGTTCAAGGACAGCGGCCACCGGCTATCGCTCAGGCGCCGCCGCGTGG
GCCACCGGCCGGCCAGGCCGGGCGCCGCCAACAAGGCCGACATGTAGCGTGCACGCACCTAGCAGCCATATCTTCTCTTC
TCTTCTCTTGTGTTAATTAATTAGGGACGGAGATTTGGGTTGGTTGATTATATATTACTCGGCGGAATTTGGCAGTAGCA
TCCCAA-GCGGAATTTGGGTGAC----ACGGTTACTCGGCGGGCACATGT-ATGAAAACATA---ACGACCTACATGGAG
TGCTCCCTTCCTTCCTCT-----TCTGCTCTGCTCTCTCTTCTCCCCCACCGACGATGA----GCTCCGTTTCAGGCGCC
GTGGGAAAAAAACGTAGGTTTATCCTGGATTTTCTTTGGAAAGCTACGTCAGACTAACTTTTGAAGGGTGTGGCTAGGTC
TCAGTCGACTGGGATTTAACCAAGTCTCAGTGAAGTGACATAACATATAAGAAGAAGA-----AAAAAAGCTAAAAGGAA
AATTTTGCAAAGATCTCCACGTAAGATCGAACGAATGAATATAGTATTCACTGTGGATTGAGACTTA-GCATAATTA-TT
TTTTGAAAGTTGAACTACATTATTGAAAGGTCAACACTACTTTTGGGTGACTAGCTTTCATCTAGTAGATGGGAATTAAG
TAAATCACATCTAGCTCGTACATCATTTCATTTGGCGTGAATATCTGTGTGAATCTTTTT-AGATGTGACTTAATTGTTA
AATTAATCCGCTTTGAAAGTCGATAAAAAAT-TTGCAAGTTACTATTTGAAAGGTTCAAAAACCGTCAGAGTTTCCTTCT
AAAAAGTTTTGGAAGCCTGGTTTCATTTTAA-------------------------------------------------
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>chrUn_560
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--------------------AAACGTTCATTTTGCCATGAATTCCCAGTAACGTCAGCACAATAGCATTCTCATTTTT--
-TTTCCTCCCCAGAATCCAACCCTTGCCAGCTGGCGAGATAGTTTCCTTGTACGCGTCTGTTTCA-AAATAATTTCCATC
TGCGCGTCTGCATGCGCGCCATGAATGGATAAAAGCT----AGACCTAAGCCTAAGCTAACTCCTCCTATTTCTCCGGCG
GTCACGGGGCCGTCTTCCGGCCTCCCTGCACCGTTTCTCCACCTCCGCC---TTAATTTGTCACCCACCCAAGAATAAAC
CGACCCGAAAACAGCGTGAGTGAATAATTAGGCAAGCACCAAAACTGAGGATATACCAGGAAATAGCTT-AGTATAGTCC
CCTTCCAAGCACAGGAGAGGAGCGGAGAGGGGATCGATCGATCG--------CGCGGCCGGCGGCATGTCGCGGTTGGCG
TCGGCGCTGCTTGCCCTGGCGACGGCGGCCGCGGTGGCGGTGGCGGTGGCGGCGCGGCCGGCGGTGGACGTGACCGCGAC
GGTGGCCTTCGGGGACGGCTACACGCCGCTCTTCGGCTTCGACAACATCCTCCGCTCCGCCGACGACCGCACCGTCAGCC
TCCTCCTCGACCGCACCACCGGTACGTACGTACGACAATAGCCTCCTCCTC--------------------GGCCGGTCG
GCCGTACGTTCG---------CGCGCATGGCGCGGCTTGATTTACTCCGTTAATTTCTGGCGCGTTTGTCTGTTTCCCAT
GCAAAACG---------TACG-TCAGTTAATGGTAATTAAAATGGGCGGGCAGGGTCGGGGTTCATCTCGTCGGCCATGT
ACGAGCACGGCTTCTTCAGCGCGTCCATCAAGCTGCCGTCCGACTACACGGCGGGGGTGGTGGTGGCCTTCTACACGTCC
AACGGCGACGTGTTCCCCAAGACGCACGACGAGCTGGACTTCGAGTTCCTGGGCAACATCCGGGGCAAGCCGTGGCGGAT
GCAGACCAACATGTACGGCAACGGCAGCGTCAGCCGGGGCCGGGAGGAGCGCTACGTGCTGCCCTTCGACCCCACCACCG
AGTTCCACCGCTACTCCATCCTCTGGGCGCGAGACGCCGTCGTCTTCTACGTCGACGACGTGCCCGTGCGCCACCTGCGC
CGCGCCCGCGCCGGCCGCGACTTCCCGGCCAAGCCCATGGCGCTCTACGCCACCGTCTGGGACGCCTCCAACTGGGCCAC
CTCCGGCGGCCGCTACCGCGTCAACTACCACTACGGGCCCTTCGTCGCCTCCTTCACCGACCTCGCCCTCACCGGCTGC-
-----TCCTCCCCCACGGAAGAAGGCTGCGCCGACGCGCTGGCCGCCTCCGACCCCGCCGTCATGACGCTCGCCAAGCAG
CAGGCCATGCGCCAGTTCAGGGAGCGCAACATGGTCTACTCCTACTGCTACGACACCAGGCGCTACCCCGTGCCCTTCCC
GGAGTGCGACCTCGTCGAGTCGGAGCGGAGCAGGTTCAAGGACAGCGGCCACCGGCTCGCGCTCAGGCGCCGCCGCGTCG
GCCGCCGGCCGC---------------CCAACAAGGCCGACATGTAGCGTGCACGCACCTAGCAGCCATATCTTCTCTTC
TCTTCTCTTGTGTTAATTAATTAGGGACGGAGATTTGGGTTGGTTGATTATGTATTACTCGGCGGAATTTGGCAGTAGCA
TCCCAA-GCGGAAATTGGGTGACACGTACGGTTACTCGGCGGGCACATTGCATGAAAACATATATACGACCTACACGGAG
TGGTCCCTTACTTCCTCCTCTGCTCTGCTCTGCTCTCTCTTCTCCCCCACCGGCGATGGGTCGGCTCCGTTTCAGGCACC
GTGGGAAAAAAACGTACGTTTATTCTGGATTTTCTTTGAAAAGCTACATCGGACTAACTTTTGAAGGGTGTGCCTAGGTC
TCAGTTGACTAGAATTTAACCAAGTCTCAGTCAAGTGACATAATATATAA-------A-----AAAAAAGTTAAAAGAAT
TTTTTTGCAAAGATCTCCACGCAGGAT----CAAACGAATATAGTATTCACCGTCGATTGAGACTTA-GCATAATTATTT
TTTTGAAAGTTGAACTACATTATTGGAAGGTTAACACTGCTTTTGGGTGACTAGCTTTCATCTAG---ATGGGAATTAAG
TAAATCACCTCTAGCTCGTACATCATTTCATTTGGCGCGCATATCTGTGTGAATCTTTTTTAGATATGACTTAATTGTTA
AATTAATCCGCTTTGAAAGTTGATAAAAATAATTGCAAGTTCCCATTTGAAAGGTTAAAAAACCGTCAGAGTTTTCTTCT
AAAAAGTTTTGGAAGTCTGGTTTCATTTTAAAAGGTCATGCTTGCAAACACACCACTGCTGAAATAGTTTACAAGAAGAC
AATCTTATAAGACGGCAATTAATGCCTACATTCATGGAGCATGACTAAATCAACATAGCATAATTAATGATGCGAAAGCC
CGTTGAGATCATCAAATGACATCTCGACCATCGCATCATCTTGAAGCCTAGTCTATTTTGGCTATCGTGCGGCCAAGCCT
TCATATATTATGCTTGTGTTACATGTGTTCGACTTCAACACCGAACACTCTGCATAGTCTAATCAAGTTGTGGCCTTTTA
CAAATATATTGGATACCGATTCCAATAAACTTCATCTTAACGAACATGTAT---TCATCTTGAAGTTGTCAGCTTCAC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSS-------SS---S---------------S--------------SSSSS--------
---S------------S--S-SSSS------------S-----------------------------SSSSSSSSS---S
--SSS---SS--S--SS--S------SSSSSSSSSSSS---------S-----S-S------S--------------SS-
---------------S-----S------S-S----S----S-----S---------S-------S---------------
S--S-S------------S---------------------S-S---------------S-S------S---------S-S
--S-------S------SS----------------------S--S-S---------S------S----------------
------S----------S-------S--------------S--S------------------S-S---S--SS-----SS
SSSS------------S---------------------------------------------S---S---S-----S-SS
S---S------------------------S---SS------------------------------S---S----------
S--------------S----------------------SSS-----------S---------------------------
--------------------------------------------------S-----------------------------
------------------------------------------------------------------------------S-
-S------------------S-----------------------------------------------------------
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-------------------------------------------S--------------S---------------------
---------------------------------------S----------------------------------------
--------------SS-SSSSS----------------------------------------------------------
--S----------------------------------------------------------------S------------
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-S---------------------------------------------------------------S--------------
---------------------SS----------------------------------------------------S----
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-----------------------------------------S--------------------------------------
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--------------S-----------------------------------------------------------------
------S----------------------------------------------------S--SS--------------S-
-----------------------------S-----------------------S--------------------------
-----S--------------S------------------------------------S----S----------------S
-S-------S-S----------------------------------------------SSSSS---S---------S---
--------------S-S-S-----------------------------------S-----------SS--S-----S---
-------------------------------------------------S------------------------------
------------------------------------------------------S-----------------S-------
S------------------------------------------------------------------S------------
-----------------------S--------------------------S-------------------SSSS------
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-------------------------S------------------------------------------------------
----------S------------------S----S-------SS------------------------------------
---------S-------S-------------------------------S-SSS------------------------
>forward_69
-------------------------------------------------CCTCGTTCAGCAATTTCCGC-----------
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>reverse_1244
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-------------------------------------------ATCCATCCATCCTCCGTCCT-----------------
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>forward_506
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------TGCCAGGATTTACCGTGCTC------------------------------------------------------
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>reverse_1863
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----------------------GACTACCACTACGGGCCCTT--------------------------------------
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>forward_1259
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---------------------------------------GGTCATCCATCCATCCTCCG---------------------
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>reverse_2657
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----------------TCGCGCAAGATCGAACGAAT--------------------------------------------
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