>input_sequence_59095
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------------AT------------GTCGTGCATGGGAGCAGTCGCCACCGTGCTGATGGTGCTGTGCGCCGCCGTGTC
CTCTGCGGCAGCGCAGCCGCGCCGCCCGCTGCCCCCGAACTCCCTCGTGATCCACCCT-GGACGGTTCGGCAAGAGGGCT
CAGACTCTCACCTGCGACTTCC---------------ACCCCTGCGTGGCCACCTGCCCTAAGCGCTGTCCCGAGGAGTG
CTTTGTTGTCTGCTCCTCCTGCAAGACATACTGCTGTGAGAC-------AT-----CCCAATCTTTCCCTAGCCTCAAGC
TATGCATGCCCTTTTCTTTAAATG-----------------------ATGGTAGATCGAGGACACTTCGGTCTTA---GA
CCTCAACATC----------------------------------------------------------------------
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----CATCTGAAGATGCACGACGTTTTA-ATTATTGCAATGATAATGCTCTAGACCGGTAGTGACGTTCTATTTTATGAT
GATACTAACGACAAAA--CCTTCTTGAAGTGTGTGACTTCTACCCTGGGTTTATCTGCGGCGACCCCCGCTTCACTGGCG
CTGACGGCAATAACTTCTACTTCCACGGCACGAAGGACCAGGATTTCTGTGTCGTCTCTGATGCCGACCTCCATATCAAC
GCTCACTTCATCGGCAAACGCGACCCGTCCATGAGCCGCGACTTCACATGGATCCAGGCCGTAGGTGTCCGCTTCGCCGA
CCACCGCCTCTACGTGGGTGCCAAGAAGACCGCCAAGTGGAACAATGACGTCGATCGCCTCGAGT---------------
----------------TGGCCTTTGACGGAGCACCGATTGACGTCGCTGGTGACATTGGTGCACAGTGGCAGTCCACTGT
TGTGCCCGGCCTGACCGTCACGAGGATCTCCATGACCAACAACGTTAGGGTTGAGCTTAAGGGTGTGTTCGACATCATGA
CTAAAGTGGTGCCCATCACGAAGGAGGACTCGCGTGTTCACAACTACGGTGCGACAGAGGATGATAGTCTCGCACATCTG
GACATTGGGTTTAAGTTCTATGACCTGACTGGCGATGTTCACGGTGTTCTCGGCCAAA-CCTACCGCCCCGACTATATAA
ACAAGTTTAACGTGAGTTCTAGCATGCCGGTGATGGGGGGTGTAGCAAGCTTTGTCTCATCCGACATCTTTGCCACCGAC
TGCAAGGTCGCTAGGTTTGGCCGTAATGCCAACATCTCCATGGTCACTGCCAGGGCCAACTAA-----------------
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>chr4B_1_TraesCS4B01G327300
TTTTTTTCCTAAAACTTGTAGTTGTTCAGGACGGATTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACATATTTG--------------------------------
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--------------------------------------------------TCTTTTTTCGTATGCCACGTGTGAAAGT--
---------------------------------ATGTGCATGTGTATTCACCTTGGACATACATATCACAAATACATATT
TGTCTTTTTTCTTTAAATTTCCTTGGACATACAAATACATCATTTTAATACCGGGCTACCTGGAGCCGGCCCCCATTAGC
TTTTTTC-AGGTAAACTACCCGCTATTGTTGGAATATGGCATCTTTTATGAGAAGAATAATATGGCATATTGACCAAATT
GGACCGTTATGATATGGAATGATTTCTTGCAGGAGTGAACAATTTTTCGCTTGCCTCGACTAGACTTCTTTTAGGCTCTA
GGCGAGGCATTTGGCTGTGGCCGCACCTAAGTGTGCTTAAGCGCAACCTAATTGTTTCCTCTCGAACAGAGAAATTAGTA
GACAAATCTGCTTACGTAGGCGTTCGATCTTCTAGTTGGTGCGATGCTAAGCGATGTCAGTCGCTTTGCGTCCAGGATCG
ATCTCCCAAACGTGCATACGTTGTCAATCACATGGATGCATCATGGGTTGCGCGCAACAATAAGTCAATGACCATCTTTC
GCAGCTTCGACCAATCACATCCTCCCGCGCATCCTATAAATTCCCTTGTGCAACGCAGGCATCCATCT--TATCAAACTC
ACAACGAGCTCCCCACATGCATACTAGCG------A------ACAGAGATAAGCCAATTAAGCTAGCACACGCAGGCCCC
GGGTACGTAGCAAT------------GTCGTGCATGGGAGCAGTCGCCACCGTGCTGATGGTGCTGTGCGCCGCCGTGTC
CTCTGCGGCAGCGCAGCCGCGCCGCCCGCTGCCCCCGAACTCCCTCGTGATCCACCCT-GGACGGTTCGGCAAGAGGGCT
CAGACTCTCACCTGCGACTTCC---------------ACCCCTGCGTGGCCACCTGCCCTAAGCGCTGTCCCGAGGAGTG
CTTTGTTGTCTGCTCCTCCTGCAAGACATACTGCTGTGAGAC-------AT-----CCCAATCTTTCCCTAGCCTCAAGC
TATGCATGCCCTTTTCTTTAAATG-----------------------ATGGTAGATCGAGGACACTTCGGTCTTA---GA
CCTCAACATC----------------------------------------------------------------------
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----CATCTGAAGATGCACGACGTTTTA-ATTATTGCAATGATAATGCTCTAGACCGGTAGTGACGTTCTATTTTATGAT
GATACTAACGACAAAA--CCTTCTTGAAGTGTGTGACTTCTACCCTGGGTTTATCTGCGGCGACCCCCGCTTCACTGGCG
CTGACGGCAATAACTTCTACTTCCACGGCACGAAGGACCAGGATTTCTGTGTCGTCTCTGATGCCGACCTCCATATCAAC
GCTCACTTCATCGGCAAACGCGACCCGTCCATGAGCCGCGACTTCACATGGATCCAGGCCGTAGGTGTCCGCTTCGCCGA
CCACCGCCTCTACGTGGGTGCCAAGAAGACCGCCAAGTGGAACAATGACGTCGATCGCCTCGAGT---------------
----------------TGGCCTTTGACGGAGCACCGATTGACGTCGCTGGTGACATTGGTGCACAGTGGCAGTCCACTGT
TGTGCCCGGCCTGACCGTCACGAGGATCTCCATGACCAACAACGTTAGGGTTGAGCTTAAGGGTGTGTTCGACATCATGA
CTAAAGTGGTGCCCATCACGAAGGAGGACTCGCGTGTTCACAACTACGGTGCGACAGAGGATGATAGTCTCGCACATCTG
GACATTGGGTTTAAGTTCTATGACCTGACTGGCGATGTTCACGGTGTTCTCGGCCAAA-CCTACCGCCCCGACTATATAA
ACAAGTTTAACGTGAGTTCTAGCATGCCGGTGATGGGGGGTGTAGCAAGCTTTGTCTCATCCGACATCTTTGCCACCGAC
TGCAAGGTCGCTAGGTTTGGCCGTAATGCCAACATCTCCATGGTCACTGCCAGGGCCAACTAAACTATTTCTCAAGACTT
T----ATC----GGTTAATGTAATCGGCATAATGGTTGGCCTAGAAATAATACGTGAAAATTGTAAGGTTTAGCGTCATT
TTGTGTGCAAAGCTGCTGGCCTTCTGGAAAAACAATGGAATTAACTATGACGTAACAAACTGAAATAATGGTGCTTCGCT
GTGTTGTCTAGGTTTTATGTTAATGTGATGCCATGTGCAAATTGATCTTTAC-TTTTCGTTTGTCCTCCAACTCTAACTC
TAGCACTTCCTCCGTATCATAATACACGTCTCTTTTATACCGACACAGTCTTCTAAACTTACCCTTGGCCATCAATTTTC
ACTATAGTAGACTTCTTGTCTAAAAGAGGTGGAGTCGATACCTATTTGCTATTCTGGTGAATTAGAAGTTGCGACAATTT
TTTTTTGAAAGAAAAGGCAGGCCATTGTCTACCTTATGCATTCAAAACGGGCAGGGTGACCAAAGGTCAATTACATGAGG
AAGTGTTTAATGGAAACCAAAAGCTCCCGGGAGAAAAACAACCAGAGAGGGAGATGGTCAAGATGGCAATATTCCCCGTG
GGGACGGGTACCCGCAGGGATTTACCCATCATGGAGCGGGGATGGGGGACAAATTCACCCCATGGGTATTGTCTGGTCAG
TACCAGAAACCGCAATATTTTTGTGGGTTGGAAACCGACAGGAAAAGAGCCGAAGCCGACAGGAAAAGTATTTCCTGTCA
GTCACCCGTCAGGGAAAGCCGACGGAGATAGCTTGACAGGGAAACTTGGTTTTGCGTGTCGGCGGACCGGCAGGAAACAT
TTCCCTGACGGGCACTCCTGACGGTGACCGACGGAGAAATATGATTTCGTCATGTATAGGGTAGCCAGGAGTATACGTTA
TTTCCCTGTCGGTCCGGACCGACAGGTAAATGCACAACATTTCGCTGTCAGTTCATTACCGACAGGAATACTCGTTACAT
TTCACTGGAGTTCGTGCCCGACAGGAATTTGT
>chr4D_284
ATACTAATTACTTAAACTTCTTAAAGTGTGTGATTTCTACCCTGGGATGTCATGCGGTGACCCCCGCTTCACTGGCGCCG
ATGGCAACAACTTCTACTTCCATGGCAAGAAGGACCAGGACTTCTGTGTCGTCTCTGACGCTGACCTCCATATCAACGCC
CACTTCATCGGCAAACGCAAATGAGCCGAGATTTCACATGGATCCAGGCCTTGGGCATCCGCTTCGTGGACCACCGCCTC
TACATGGGTGCCCAGAAGACCTCCAAGTGGAATAATGACATCGATCGCCTCGAGTTGGCCTTCGATGGAGCACTGATCGA
CATCGCTACTGACATTGGCGCACAATGGCAATCCACCGTCGTGCCTGCCCTGACCATCACGAGGACCTCCATGGCCAACG
GTGTGAGGGTCGAGCTTAAGGGTGTGTTCGACATCATGACTAAAGTAGTGCCCATCACGGAGGAGGACTCCCGCATCTAC
AACTACGATGTGACAGAGGATGACAGCCTTGCGCATTTGGACATTGGTTTCAAGTTCTATGGCCTCACCGACAATGTTCA
TGGCATTCTAGGCCAGACCTACCGCTCCGACTACATCAACAAGCTCAACGTTAGTTCAAGCATGCCGGTGATGGGTGGTG
TAGCAAGCTATGTCACTTCCGACATTTTTGCCACCGACTGTAAGGTCGCTAGGTTCGGCCATAATGGCGACATCTCCATG
ATCACGGCCAGGGCCAACTAAACTATTGCTCAAGACAAAACCGGTTAATGTAATCGGCCTACTGATTGGCCAGTACTACT
ATGTGAGAATGTAACGTTTAACATTATCTTGAATAAAATTTACCGGCCTTCTAGAAAAAAAAAGGAATTGACTTTCATGC
TGACATAATGGTGCTTCCCTTATGTCAGCATGATGTCCTCCTACTCTAGTTCTAGCACTTCCTACATATCACAAATACAT
GTTGTTTTTATATTGAGTTGGTCTTCTAGATTTACACTTAGGGCTTAGGAACAACCTAGGTGGTTGTACCGTTTTGACCA
TCATTGGTTTATTTTATGGATTATTATATGCGTATAGACATCAGTGTAGGACATGAAAAGGGGTAAACTACGAGTGTGGA
TTTGTGGCCGTCAAGCTCCACATGGCTCGGTATTTAAAATATATATTAAAAACCACATTCAAAAGTTAAAAAAATGGATT
TTTTTGCTAAAACTTGTAATTGTTCAGGACGGATTTGTAAAATTTGTTTGAAAATATTATGATTTGTAAGCTACACAGAA
AAAACAAAAATCCAGCCCAACAAAAAAAAATCGGCGCAAATACCAATTTGTCTTTTTTCGTACGCCACGTGTGAAAGAAT
ATTGCTATAGAATTTCACACATACGCAGTATACATGTGCATGTGTATTCACCTTTT------------------------
-----------TTAAAATTTCTTGGGATATACAAATACATCATTTTAATACCGGGCTACCTGGAGCCGGCCTCCATTAAC
TTTTTTCAAGGTAACCTACCCGCTATTGTTGGAATATGGCATCTTTTATGAGAAGAAAAATATGGCATATTGACCAAATT
GGACCGTTTTGATATGGAATGATTTCTTGCAGGAGTGAACAATTTTGCGCTTGCCTCGACTAGACTTCTTTTATGCTCTA
GGCGAGGCATTTGGCTGTGGCCGCACCTAAGTGTGCTTAAGCGCAACCTAATTGTTTCCTTTCGAACAGAGAAATTAGTA
GACAAATCTGCTTACGTAGGCGTTCGATCGTCTGGTTGGTGCGATGCTAAGCGATGCCAGTCGCTTTGCGTCCAGGATCA
ATCTCCCAAACGTGCATACGTTGTCAATTACATGGATGCATCATGGGTTGCACGCAGCAATAAGTCAATGACCATCTTTC
GCAGCTTCGATCAGTCACCTCCTCCCGCGCATCCTATAAATTCCCGTGTGCAACGCAGGCATCCATCT--TATCAAACTC
ACAACGAGCTCCCCACATGCATACTAGCG------A------ACAGAGATAAGCCAATTAAGCTAGCACACGCAGGCCCC
AGGTACGTAGCTATGGCCAGGCCAGCGTCGTGCATGGGAGCAGTCGCCACCGTGCTGGTGGTGCTGTGCGCCGCCGTGTC
CTCTGCGGCCGCGCAGCCGCGCCGCCCGCTGCCGCCGAACTCCCGCGTGATCCACCCT-GGACGGTTCGGCAAGAGGGCG
CAGACTCTCACCTGCGACTTCA---------------CCCCCTGCGTGGCCACCTGCCCCAAGCGCTGTCCCGAGGAGTG
CCTTGTCGTCTGCTCCTCCTGCAAGACATACTGCTGTAAGAC-------AT-----CCCAATCTTTCCCTACTCTCAAGC
TATGCATGCCCTTTTCTTTAAATG------------------------TGGTAGATCGAGGACAATTCGGTCTTA---GA
CCTCAACATC----------------------------------------------------------------------
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----CATCTGAAGATGCACGACGTTTTA-ATTATTGCAATGGTAATGCTCTAGACAGGTAGTGACGTTCTTTTTGATGAT
GATACTAACGACAAAA--CCTTCTTGAAGTGTGTGACTTCTACCCTGGGTTTATCTGCGGCGACCCCTGCTTCACCGGCG
CTGACGGCAATAACTTCTACTTCCACGGCAAGAAGGACAAGGATTTCTGCGTCGTCTCTGATGCCAACCTCCATATCAAC
GCTCACTTCATCGGCAAACACGACCCGTCCATGAGCCGCGACTTCACATGGATCCAGGCCGTAGGTGTCCGCTTCGCCGA
CCACCGCCTCTACGTGGGTGCCAAGAAGACCGCCAAGTGGAACAATGACGTTGATCGCCTCGAGT---------------
----------------TGGCCTTCGATGGAGCACCCATTGACGTCGCTGGTGACATCGGTGCACAGTGGCAGTCCACCGA
CGTGCATGGCCTGACCGTCACGAGGATCTCCATGACCAACAACGTGAGGGTTGAGCTTAAGGGTGTGTTCGACATCATGA
CTAAAGCGGTGCCCATCACGAAGGAAGACTCACGTGTTCACAACTACGGTGTGACAGAGGATGATAGTCTCGCGCATCTG
GATATTGGGTTCAAGTTCTACGACCTGACAGGTGATGTTCACGGTGTTCTCGGCCAAA-CCTACCGCCCCGACTATGTAA
ACAAGTTCAACGTGAGTTCTAGCATGCCAGTGATGGGGGGTGTAGCAAGCTTTGTCTCATCCGACATCTTCGCCACCGAC
TGCAAGGTCGCTAGGTTCGGTCGTAAAGCCGACATCTCCATGGTCACTGCCAGGGCCAACTAAACTGTTCCTCAAGACTA
T----ATCGATAGGTTAATGTAATCAGCATAATGATTGGCCTAGAAATAATATGTGAAAATTGTAATGTTTATCATCATT
TTGTTTCCAAAGCTGCTGGCCTTCTGGAAAAACAATGGAAT-------GACGTAATAGACTG---TAATGGTGCTACGGT
G--TTATCTAGGTTTTATGTTAATGTGATGCCATGTGCAAATTAATCTTTAGTTTTTCGTTTGTCCTCCTACTCTAA-TC
TAGCACTTCCTCCGTATCACAATACACGTCTCTTTTATACTGACCCAGTCTTCTAAACTTACCCTTGACCATGAATTTTC
ACTATAGTAGACTTCTTGTCTAAAAGAGGCGGAGTGGATACCTATTTGTTGTTCTGGTGGATTAGAAGCTGCGACAATT-
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>chr4B_740
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---------------------------------------------------------CAGTCGCTTTACGTCCATGGTCG
ATCTCCCAGACGTACATATGCTGTCAATCACATGCATGCATCCTAGGTTGC-CGCAACAATGAGTCAATGACCATCTTTC
GCGGCTTTGATCAGTCACCTCTTCGGGCGCATCCTATAAATTCCCATG--CAACACAGCCATACATCTAGTACCAAACTC
ACAGCGAGCTGCCCACATACATACTCGCCACACATACTGAACACATAGATCGGCAAATTAAGCTAGCATAGGCAGGCCTC
AGGTACGTAGCAATGGCCAGGCCGGCGCCGTGCTTGGGAGCGGTCTCCATCGTACTGGTGGTGCTGTGCGCCGCCGTGTC
CTCTGCGACCGCACAGCCGCGCCGCCCGCTGCCGCCGAACTCCCGGGTGATCCACCCT-GGACGGTTCGGCAAGAGGACG
CAGACTCTCACCTGCGACAATACCAAGAACAAGAGGAACCCCTGCGTGGCCACCTGCGACAAGCGCTGCCCCAACGAGTG
CCTCGTCCTCTGCCCCAGCTGCAAGACATACTGCTGTAAGCATATA----TACATCCCCAATATTTCCCCAGACTCAAGC
CATGCAT-------------------------------------------------------------------------
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>chr4D_740
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---------------------------------------------------------CAGTCGCTTTACGTCCAGGGTCG
ATCTCCCAGACGTACATATGTTGCCAATCACATGCATGCATCATGGGTTGC-CGCAACAATGAGTCAATGACCATCTTTC
GCAGCTTCGATCGGTCACCTCTTCCCACGCATCCTATAAATTCCCATG--CAACACAGCCATACATCT--TACCAAACTG
ACAGCGAGCTGCCCACATACATACTCGCCACACATACTGAACACACAGATCAGCGAATTAAGCTAGCATAGGCAGGCCTC
AGGTACGTAGCAATGGCCAGGCCGGCGTCGTGCTTGGGAGCGGTCGCCATCGTGCTGGTGTTGCTTGGCGCCGCCGTGTC
CTCTGCGGCTGCGCAGCCGCGCCGCCCGCTGCCCCCGAACTCCCGCGTGATCCACCCT-GGTCGGTTCGGCAAGAGGACG
CAGACACTCACCTGCGACAACACCAAGGACAAGAGGAACCCCTGCGTGGCCACCTGCGACAAGCGCTGTCCCAACGAGTG
CCTCGTCCTCTGCCCCAGCTGCAAGACATACTGCTGTAAGCATATATATATACATCTCCAATCTTTCTCCAGCCTGAAGC
CATGCATTCCATTCTTTTATAAGTGATGGAACATGGAAAATCCACACTCG-------GAGGATAATTTGATCTTGATGGA
CCTCTCTATC----------------------------------------------------------------------
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----TATCTAAATATGCACAATATTTAATATTAATGCAATGGTAATTCTCTAGACCATCAGCGACGACCTTTCTGG---T
GATACTAACATAAAATCTTCTTCTTGAAGTGTGCGACTTCTACCCTGGCATGTCCTGCGGTGACCCCCGCTTCACCGGTG
CCGATGGCAACAACTTCTACTTCCACGGCAAGAAGGACCAGGACTTCTGTGTCATCTCAGACGCTGACCTCCATATCAAC
GCTCATTTCATCGGCAAACGTAACCCCTCCATGAGCCGAGACTTCACATGGATCCAGGCCTTGGGGATCCGCTTCGCGGA
CCACCGCCTCTATTTGGGTGCCCAGAAGACCTCCAAGTGGAATAATGACATTGATCGCCTCGAGT---------------
----------------TGTCCTTCAACGGAGCACCGGTCGACATCGCTACTGACATTGGCGCACAGTGGCAATCCATCGC
TGTGCCTGCCCTGACCGTCACAAGGACCTCCATGACCAATGGCGTGAGGGTCGAGCTTAAGGGTGTGTTCGACATCATGA
CTAAAGTTGTGCCCATAACCGAGGAGGACTCCCGCATCCACAACTATGATGTGACAGAGGATGACAGCCTCGCGCATTTG
GATATTGGCTTCAAGTTCTACGGCCTCACTGACAATGTACATGGCATTCTCGGCCAAA-CCTACCGCTTTGACTACGTTA
ACAAGCTCAACGTGAGTGCTAGCATGCCTGTGATGGGTGGTGTAGCAAGCTATGTCTCCTCCGACATCTTCGCCACCGAC
TGCAAGGTTGCTAGGTTCGGCCACAACGGCGGCATCTCCATGGTCACAGCCAGGGCCAACTAAGCTATTGCTCAAGGCAA
C----ATC----GGTTAATGTAATTAACCTACTGATTGGCC-AGTAATAATATGTGAGAACTGTGTTGTTACAATTATTT
TGAATA--AAAA-TACTGGCCTTGTGGGAAAAAT-GGAATTGACTTTC--CGTAGCAAATTG---TAA------------
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>chr4B_838
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---------------------------------------------------------------------------CTTTC
CCTGCTTCGATC-GTCACCTCTTCCCGCGCACCCTATAAAATCCCATG--CAACACAGCCATACATAT--TATCAAACTC
ACAGCGAGCTGCACACATACATACTAGCAT--------------ACAGATCAGCTAATTAAGCTAGCA----CAGGCCTC
GGGTACGTAGCAATGGCCAGGCCGGCGTCGTGCTTGGGAGCGGTCGCCATCGTGCTGGTGGTGCTGTGCGTCGCCGCGTC
CTCTGCGGCTGCGCAGCCGCGCCGCCCGCTGCCGCCGAACTCCCGCGTGATCCACCCT-GGACGGTTCGGCAAGAGGACG
CAGACACTCACCTGCGACAACACCAAGGACAAGAGGAACCCCTGCGTGGCCACCTGCGACAAGCGCTGCCCCAACGAGTG
CCTCGTTCTCTGCCCCAGCTGCAAGACATACTGCCGTAAGCATATAC----ACATCTCAAATCTTTC-CCAGTCTCAAGC
CATGCATTCCATTCTTTTCTATGTGATGGAAGATGGAAACTCCACTCACGGAAGATCGAGGACAATTCGATCTTGATGGA
CCTCTCTATCACCTCCGTCCGGGTTTATTAGGCCCCCTAGTATTTTGAGCCAAACTTTGACCATTCATATGACTAATAGA
ATATAGAATATATGCTACAAAAGGCATACTCTTGGATTTGTATTTGAAAGAGCTTTCCAAAGGTATAATTTTTATGACAT
ATAATTTATATTTCATTAGTTAAATTTGTTGGTCAAACTTTAGCCCAAAATGAGAGGGGGCCTAATAAATCCGGACGGAG
ATAGTATCTGAATATGCACAACATTTTATATTAATTCAATGGTA-----------------------------------T
GATGCTAATATAAAATCTTCTTCTTGAAGTGTGTGACTTCTACCCTGGGATGTCCTGCGGTGACCCCCGCTTCACTGGCG
CCGATGGCAACAACTTCTACTTCCACGGCAAGAAGGACCAGGACTTCTGTGTCGTCTCTGACGCTGACCTCCATGTCAAT
GCCCACTTCATTGGCAAACGCAAACCCTCCATGAGCCGGGACTTCACATGGATCCAGGCCTTGGGCATCCGCTTCGCAAA
CCACCGCCTCTACTTGGGTGCCATGAAGACTTCCCAGTGGAATAATGACGTTGATCGCCTCGAGT---------------
----------------TGGCCTTTGACGGAGCACCCGTCGACATCTCTACTGACATTGGCACACAATGGCAATCCACCTC
AGTGCCTGCCCTTACCGTCACGAGGACATCCATGACAAATGGCGTGAGGGTCGAGCTTAAGGGTGTGTTCGACATCATGA
CTAAAGTAGTTCCCATCACGGAGGAGGACTCCCGCATCCACAACTATGATGTGACAGAGGATGACAGCCTTGCGCATTTG
GACATTGGGTTCAAATTCTACGGCTTCACCGACAATGTTCATGGCATTCTCGGCCAAA-CCTACCGCTCCGACTACGTCA
ACAAGCTCAACGTGAGTGCTAACATGCCTGTGATGGGTGGTGTAGCAAGCTATTTCTCCTCCGACATCTTCGCCACCGAC
TGCAACGTCGCTAGGTTCGGCCACAATGGTGGCATCTCCATGGTCACAACCAGGGCCAACTAAACTATTGCTCAAGACAA
C----ATC----AGTTAATGTAATCGGCCTGTTCATTGGCC-AGTAATAATATGTGAGGATTGTAATGTTACA-TTATTT
TCAATA--AAAAATACTAGCCTTGTGGGAAAAAA-GGAATTTACTTTC--GGTAGCAAATTG---TAATGGTGCTTCCCT
A--TTTTTGCGGTTTTATGTTAACGCGATGTCATGTGGAAAGTACTCTTTAATTTTTCTTTTGTCCTCCAACCCTAGTTC
TAGTACTCTCC---------------------------------------------------------------------
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>chr4D_918
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-----------------------------------------------------------------------------CTC
ACAGCGAGCTGCCCACATACATACTAGCCACACTTA------ACACAGATCAGCCAATTAAGCTAGCA----CAGGCCTC
GGGTACGTAGCAATGGCCAGGCCGGCGTCCTGCTTGGGAGCGCTCGCCATCGTGCTGGTGGTGCTGTGCGCCGCCGCGTC
CTCTGCGGCTGCGCAGCCGCGCCGCCCGCTGCCGCCGAACTCCCGCGTGATCCATCCT-GGACGGTTCGGCAAGAGGACG
CAGACACTCACCTGCGACAACACCAAGGACAAGAGGAACCCCTGCGTGGCCACCTGCGACAAGCGCTGTCCCAACGAGTG
CCTCGTCCTCTGCCCCAGCTGCAAGACATACTGCTGTAAG--TATATATATACATCTCCAATCTTTC-CCAGTCTCAAG-
CATGCATTCCATTCTTTTGTAAGTGATGGAAGATGGAAACTCCACTCATGGAAGATCGAGGACAATTCGACCTTGATGGA
CCTCTCTATC----------------------------------------------------------------------
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----TATCTGAATATGCACAACATTTGATATTAATTCAATGGTATTGCTCTAGACCATCAGCAACGAGCTTTCTGA---T
GATACTAATACAAAATCTTCTTCTTGAAGTGTGTGACTTCTACCCTGGGATGTCCTGCGGTGACCCCCGCTTCACTGGGG
CTGATGGCAACAACTTCTACTTCCACGGCAAGAAGGACCAGGACTTCTGTGTCGTCTCTGACGCTGACCTCCATGTCAAT
GCCCACTTCATTGGCAAACGCAACCCCTCCATGAGCCGAGACTTCACATGGATCCAGGCCTTGGGCATCCGCTTCGCAAA
CCACCGCCTCTACTTGGGTGCCATGAAGACTTCCCAGTGGAATAATGACATTGATCGCCTCGAGT---------------
----------------TGGCCTTTGACGGAGCACCCATCGACATCTCTACTGACATTGGCGCCCAATGGCAATCCACCTC
AGTGCCTGCCCTGACCATCACGAGGACATCCATGACAAATGGCGTGAGGGTCGAGCTTCAGGGTGTGTTCGACATCATGA
CTAAAGTAGTGCCCATCACGGAGGAGGACTCCCGCATCCACAACTATGATGTGACAGAGGATGACAGCCTCGCGCATTTG
GACATTGGGTTCAAATTCTACGGCCTCACCGACAATGTTCATGGCATTCTCGGCCAAA-CCTACCGCTCCGACTACGTCA
ACAAGCTCAACGTGAGTGCTAACATGCCTGTGATGGGTGGTGTAGCAAGCTATGTCTCCTCCGACATCTTCGCCACCGAC
TGCAAGGTCGCTAGGTTCGGCCACAATGGCGGCATCTCCATGGTCACAGCCAGGGCCAACTAAACTATTGCTCAAGACAA
C----ATC----GGTTAATGTAATCGGCCTATTGATTGGCC-AGTAATAATATGTGAGCATTGTAATGTTACAATTATTT
TCAATA--AAAAATATCGGCCTTGTGGAAAAAAA-GGAATTTACTTTC--CGTAGCAAATTG---TAATGGTGCTTCCCT
A--TTTTTGCGGTTTTATGTTAACGTGATCTTATGTGGAAAGTACTCTTTAGTCTTTTTTTTGTCCTCCAACTCTAGTTC
TAGCACTCTCC---------------------------------------------------------------------
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>chr4D_918
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-----------------------------------------------------------------------------CTC
ACAGCGAGCTGCCCACATACATACTAGCCACACTTA------ACACAGATCAGCCAATTAAGCTAGCA----CAGGCCTC
GGGTACGTAGCAATGGCCAGGCCGGCGTCCTGCTTGGGAGCGCTCGCCATCGTGCTGGTGGTGCTGTGCGCCGCCGCGTC
CTCTGCGGCTGCGCAGCCGCGCCGCCCGCTGCCGCCGAACTCCCGCGTGATCCATCCT-GGACGGTTCGGCAAGAGGACG
CAGACACTCACCTGCGACAACACCAAGGACAAGAGGAACCCCTGCGTGGCCACCTGCGACAAGCGCTGTCCCAACGAGTG
CCTCGTCCTCTGCCCCAGCTGCAAGACATACTGCTGTAAG--TATATATATACATCTCCAATCTTTC-CCAGTCTCAAG-
CATGCATTCCATTCTTTTGTAAGTGATGGAAGATGGAAACTCCACTCATGGAAGATCGAGGACAATTCGACCTTGATGGA
CCTCTCTATC----------------------------------------------------------------------
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----TATCTGAATATGCACAACATTTGATATTAATTCAATGGTATTGCTCTAGACCATCAGCAACGAGCTTTCTGA---T
GATACTAATACAAAATCTTCTTCTTGAAGTGTGTGACTTCTACCCTGGGATGTCCTGCGGTGACCCCCGCTTCACTGGGG
CTGATGGCAACAACTTCTACTTCCACGGCAAGAAGGACCAGGACTTCTGTGTCGTCTCTGACGCTGACCTCCATGTCAAT
GCCCACTTCATTGGCAAACGCAACCCCTCCATGAGCCGAGACTTCACATGGATCCAGGCCTTGGGCATCCGCTTCGCAAA
CCACCGCCTCTACTTGGGTGCCATGAAGACTTCCCAGTGGAATAATGACATTGATCGCCTCGAGT---------------
----------------TGGCCTTTGACGGAGCACCCATCGACATCTCTACTGACATTGGCGCCCAATGGCAATCCACCTC
AGTGCCTGCCCTGACCATCACGAGGACATCCATGACAAATGGCGTGAGGGTCGAGCTTCAGGGTGTGTTCGACATCATGA
CTAAAGTAGTGCCCATCACGGAGGAGGACTCCCGCATCCACAACTATGATGTGACAGAGGATGACAGCCTCGCGCATTTG
GACATTGGGTTCAAATTCTACGGCCTCACCGACAATGTTCATGGCATTCTCGGCCAAA-CCTACCGCTCCGACTACGTCA
ACAAGCTCAACGTGAGTGCTAACATGCCTGTGATGGGTGGTGTAGCAAGCTATGTCTCCTCCGACATCTTCGCCACCGAC
TGCAAGGTCGCTAGGTTCGGCCACAATGGCGGCATCTCCATGGTCACAGCCAGGGCCAACTAAACTATTGCTCAAGACAA
C----ATC----GGTTAATGTAATCGGCCTATTGATTGGCC-AGTAATAATATGTGAGCATTGTAATGTTACAATTATTT
TCAATA--AAAAATATCGGCCTTGTGGAAAAAAA-GGAATTTACTTTC--CATAGCAAATTG---TAATGGTGCTTCCCT
A--TTTTTGCGGTTTTATGTTAACGTGATCTTATGTGGAAAGTACTCTTTAGTCTTTTTTTTGTCCTCCAACTCTAGTTC
TAGCACTCTCC---------------------------------------------------------------------
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>chr5A_1003
--------------------------------------------------------------------------------
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--------------------------GTCGTGCTTGGGAGCGGTCGCCATCGTACTGATGGTGCTGTGCGCCGCCGTGTC
CTCTGCAGCTGCGCAGCCGCGCCGCCCGCTGCCGCCGAACTCCCGCGTGATCCACCCAGGGACGGTTCGGCAAGAGGACG
CAGACACTCACGTGCGACAATACCAAGGACAAGAGGAACCCCTGCGTGGCCACCTGCGACAAGCGCTGCCCCAACGAGTG
CCTCGTCCTCTGCGCCAGCTGCAAGACATACTGCTGCAAGAC-------ATACAGCTCCGATCTTTC-CCAGTCTCAAGC
CATGCATTCCATTCCTTTTTAAGTGATGGAAGATAGAAACTCCACTCATGGAAGATCAAGGACAATTCGATCTTGATGGA
CCTCTCTATC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----TATCTGAATATGCACAACATA-TATATTAATTCAATGCTAATGGTCTAGACCATCAGCGACGACCTTTCTGA---C
GATACTAATACAAAATCTTCTTCTTGAAGTGTGTGACTTCTACCCTGGGATGTCCTGCGGTGACCCCCGCTTCACTGGCG
CCGATGGCAACAACTTCTACTTCCACGGCAAGAAGGACCAGGACTTCTGTGTCGTCTCTGACGCTGACCTCCATATCAAT
GCCCACTTCATCGGCAAGCGCAACCCCTCCATGAGCCAAGACTTCACATGGATCCAGGCCTTGGGCATCCGCTTCGCAAA
CCACCACCTCTACTTGGGTGCCATGAAGACCTCCCAGTGGA------------ATCGCCTTGAGT---------------
----------------TGGCCTTCGACGGAGCACCGATCGACATCTCTACTGACATTGGCGCACAATGGCAATCCACCTC
CGTGCCTGCCCTTACCGTCACAAGGACATCCATGACAAATGGCATGAGGGTCGAGCTTAAGGGTGTGTTCGACATCATGA
CTAAAGTAGTGCCCATCACGGAGAAGGACTCCCGCATCCACAACTATGATGTGACAGAGGATGACAACCTCGCACATTTG
GACATTGGGTTCAAATTCTACGGTCTCACCGACAATGTTCATGGCATTCTCGGCCAAA-CCTACCGCTCCGACTACGTCA
ACAAGCTCAACGTGAGTGCTAACATGCCTGTGATGGGTGGTGTAGCAAGCTATGTCTCCTCCGACATCTTCGCCACCGAC
TGCAAGGTCGCTAGGTTCGGCCACAATGGCGGCATCTCCATGGTCACAACCAGGGCCAACTAAACTATTGCTCAAGACAA
C----ATC----GGTTAATGTAATCGGCCTATTGATTGGCC-AGTAATAATATGTGAGGATTGTAATGTTACAATTATTT
TCAATA--AAAAATACTGGCCTTGTGGAAAAAAAAGGAATTTGCTTTC--CATAGCAAATTG---TAATGGTGCTTCCCT
A--TTTTTGCGGTTTTATGTTAACACGATGTCATGTGGAAAGTACTCTTTAA------TTTTGTCCTCCAACTCTTGTTC
TAGCACT-------------------------------------------------------------------------
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>chr3B_1403
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---------------------------------------------------------------------------ATGCT
GACGCTAAC--CAAAT--CCTTCTTGAAGTGTGTGACTTTTACCCCGGGGTGTCATGTGGCGACCCGCGTTTCACAGGAG
CCGACGGCAACAACTTCTACTTCCACGGCAAGAAGGACCAGGACTTCTGTGTCATCTCCGATGCTGACCTCCATATCAAC
GCTCACTTCATCGGCAAGCGCAACCCAGCTATGAGCCGTGACTTCACCTGGATCCAAGCGCTGGGCATCCGCTTCGCTGA
TCACCGCATGTACATGGGCGCCCAGAAGACCACCAAGTGGAAGAACGACGTCGACCGCCTTGAGT---------------
----------------TGAACCTCGATGGAGAATCATTCAACATCGCTACAGACATCGGGGCAAAGTGGCAGTCCACTGT
TGTGCCTGGCCTGACCGTCACGAGGACCACCGTGACCAATGGCGTGAGGGTCCAGCTTAAGGGTGTGTTTGACATCATGG
CTAAGGTGGTGCCCATCACGCAGGAGGACTCCCGCGTCCACAACTACGGTGTAACTGACGATGACAGCCTCGCGCATCTG
GACATCGGGTTCAAGTTCTATGACCTCACCGACGACGTTCATGGTGTCCTTGGCCAGACC-TACCGCCCTGACTACGTCA
ACAAGCTCAGCGTGAGCGCTAGCATGCCTGTGATGGGTGGTGTAGCCAGCTACATCTCCTCTGACATTTTCTCCACCGAC
TGCAAGGTCGCTAGGTTCGGACTTAGCACCGGCATCTCCATGGTCACCACCACCGCAAACTAAGCAATTCCTCAAGAC--
--------------------------------------------------------------------------------
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>chr5A_1409
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-ATACTAATCACAAAA--TCTTCTTGAAGTGTGTGACTTCTTCCCTGGAATGTCCTCCGGTGACCCCCGCTTCACTAGCG
CCGATGGCAACAACTTCTACTTCCATGGCAAGAAGGACCAAGACTTATGTGTCGTCTCTGATGCCGACCTCCATATCAAT
GCCCACTTCATCGGCAAACGCAACCCCTCCATGAGCCGAGACTTCACATGGATCCAGGCCTTGGG-ATCCGCTTCACAGA
CCACCGCCTCTACTTTGGTGCCTAGAAGACCTCCAAGTGGAGTAATGACATCGATCGCCTCGAGT---------------
----------------TGACCTTCGATGGAGCATCGATCAACATCGCTACTGACACTAGCACATAGTGGCAATCCAACAC
TGTGCCTGCCCTTACCGTCACGAGGACCTCCATGACCAACGGTGCGAGGGTCAAGCTTGAGGGTGTGTTTGACATCATGA
CTAAAGTAGTGCCCATCACGGAGGAGGACTCCCGCATCCACAACCATGATGTGACAGAGGATAACAGCCTCACGCATTTG
GTCATTGGGTTCAAGTTCTATGGCCTCACCGACAATGTTCATGGCATTCTAGGCCAAA-C-TACCGCTCCAACTACATCA
ACAAGCTCAATGTGAGTTCTAGAATGCCGGTGATGGGTGGTGTAGCAAGCTATGTCTCCTTCGACATCTTCGCCATCGAC
TGCAAGGTCGCTAGGTTCGGCCATAATGGTGGCATCTCCATGATCACAGTCAGGGCCAACTAAACTATTGCTCAACACAA
A----ATC----GGTTAATGTAATCGGCCTA-------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>chr5A_1558
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------------------------------------------------------------------------ATATCAAC
GCTCACTTCATCGGCAAACGCAACCCGTCCATGAGCCGCGACTTCACATGGATACAAGCCATAGGTGTCCACTTCATGGA
CCACCGCCTCTACGTGGGTGCCAAGAAGACCGCCAAGTGGAACAATGACGTTCTTGGTCATGGAGGTCCTCGTGACGGTC
AGGCCATGCACATCAGTGGACTGCCACTGTGCACCGATGTCACCAGCAACGTCAATCGGTGCTCCGTCGAAGGCC-----
----------------------------------------------AGGGTTGAGCTTAAGGGTGTGTTCGACATCATGA
CTAAAGTGGTGCCCGTCATGAAGGAAGACTCACGTGCTCACAATTACGGTGTGACAGAGGATGATAGTCTCGCGCATCTG
GACATTGGGTTCAAGTTCTACGACCTGACAGGTGATGTTCACGGTGTTCTCGGCCAAA-CCTACCGCCCCAACTATGTAA
ACAAGTTCAACGTGAGTTCTAGCATGCCGGTAATGGG-GGTGTAGCAAGCTTTGTCTCATCCGACATCTTCGCCACCGAC
TGCAAGGTCGCTAGGTTCGGTCGTAATGCCGACATCTCCATGGTCATTGTAAAGGCCAAGTAAACTGTTCCTCAAGACTC
TATCGATC----CGTTAATGTAATCGGCATAATGATTGGCCTAGAAATAATATGTGAAAATTGTAATGTTTAGCATCATT
TTGTGTCCAAAGCTGCT-GCCTTCTGGAAAAAAAATGGAATTAACTATGACGTAATAAACTG---TAATGGTGCTACGGT
G--TTGTCTAGGTTTTATGTTAATGTGATGCCATGTGCAAATTAATCTTTAGTCTTTCGTTTGTCCTCCTACACTAA-TC
TAGCACTTCCTTTGTATCACAATACACGTCTCTTTTATACTGACACAGTCTTCTAAACTTACCCTTGACCATGAGTTTTC
ACTATAGTAGGCTTCTTGTCTAAAAGAGGCGGAGTGGATACCTATTTGTTGTTCTGGCGGAATAGAAGCTGCGACAATT-
--------------------------------------------------------------------------------
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--------------------------------
>SNPs
S-SS-SSSSSSSS-SSSS-SS-SSSSSSS-SSSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-S-SSS--SSS--------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------S--------------S--
------------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS--S-------S-S---S-------------------------------------------S------S-
--------------S------------------------------------------S----------------------
--------S-------------------------------------S--------------------------S------
------------------------------------------------------------S-------------------
-----------------------------S---S----------------------S-----------------------
---------------------------------------------------S----------------------------
----------S--S----S--------------------------S----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S----------------------------------S----------------------------------S
---------------------S-------------------------------------S--------------------
-S-----------------------------------S------------------------------------------
----------------------------------------------------------------S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S----------------------------S---S-----
--------------------------------------------------------------------------------
------------------------------S-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S--------------------------------------S----------------------------------
-------------------------------S-------------------S----------------------------
-----------S--------------------------------------------------------------------
-------S--------------------------------------------------------------S---------
-----------------S------------S--------------------------------------S---------S
----------------------------------S-----------------S-------------S-------S-----
------S-------------------------------------------------------SSS---------------
-SS----------------------------------------S-------S-------------------------S--
-------------------S--------------------S--------------------------S----S-------
-----------------------------S-----S------------S-S--------S--------S----------S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1934
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--------------------------------------------------------------------------TCTTTC
GCAGCTTCGACCAA------------------------------------------------------------------
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--------------------------------
>reverse_4014
--------------------------------------------------------------------------------
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-------------AAGGCAGGCCATTGTCTACC-----------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
