>input_sequence_59063
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--------------------------------------------------------ATGCAGGTGCGCGTCGCCGGCGAC
CTCCGCGCACCGGATGACCTGGCCGCGTTCCGGGGCAGCCACGATTGGATCAACTTCGCCAGCATCGACGGGCTGCTCGT
CACGGGCGGCGGCACGTTCGACGGCCGCGGCGCGTCGTCGTGGCACCTCAACCAGTGCCCAACGAATCCGAACTGCAAGC
CCCTCCCCGTCGTAAGCCGCGCTAATTTCTCACTGTTTCAC-------TCTAAACTGAGCTGCTGGGCCGACATCGTGAT
ATGATACGACTTCTCCTTAACCGTTTCTCGGGACTCTGCTCCGGCCCCGGCAGTCCATAAAACTCGGGCGCGTGAGGAAC
GTGACCGTCACGGGGGTGACATCGCTGGACAGCAAGTTCTTCCACGTGATCATCATCGGCAGCCAGGACGTGTCCATCCA
TGGCGTCACCATCCGGGCGCCGCGGGACAGCCCCAACACGGACGGTGTCCACATCCAGGGCTCCTCCAACGTGCGCATCA
CCGACACGGCCATCGCCACGGGGGACGACTGCATCTCCGTCGGCCCGGGGAGCGCCGACATCACCGTGTCCGGGGTGTCC
TGCGGACCCGGCCACGGCATCAGCGTGGGCAGCCTCGGGAGGCACCCAGGCGAGGAGGACGTGCGCGGGCTGCGCGTGTC
CAACTGCACCCTCGCCGGCACCGCCAACGGCGTACGCATCAAGACTTGGCGCGGCGGGCTCCGTCCGGGCTCCGTCGTGT
CCGGTCTCGTCTTCGAGGACATCGTCATGAGGAAGGTCCGGAACCCCATCATCATCGATCAGGAGTACTGCCCCTACAGC
TCCAGCTCCTGCCGCCATGAATCGGTCAGAGCCACAGTTGTTAATTTCTTGTCAAATCCAGACACCGATCTTACGGTTTT
AGCCTAACAGAATTATTCGTGCAGGCGCAGCGGCCGTCCGTGGTGAAGATAAGCGATGTAAAGTTCAAGAACATCAGGGG
CGTGTCGGCGACCCAGGTCGCGGTGAAGCTGTCGTGCAGCGGCGCGAGCCCGTGCCATGGACTGGAGCTCAGGGACATCG
ACCTGACGTACGTCAAGCGCGGCGTCGCCACAGAGTCGCGGTGCGAAAACGTCGCCAGTGGTATCGCCGGCGGCATGCTC
GTACCTCCCTCATGTATATGA-----------------------------------------------------------
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>chr7A_1_TraesCS7A01G404800
GTATTATTATTTTATTATTATGAAGAAAATTCCAGCCATCGAACAAATTCAACCCGAAAAAACCCA------CACGTACC
TCGC----GTAGCTCTACCAGGCAACCACTAACCCTATAGTAAAAGAC-AAACCAAACTGAAAAATATACAACTCA----
CTAAGGTTACATGAAGGAAACCATGCAAGGACGCCGATGGTGATGAGTCTAACTATAGATCGGTTTCGGGATTTTCATCC
CCAAAGTGAAGATTCGATCCATCACCATCAGCACGAACAGATACTAACGCGTGTCGACATATAGTCAGATCAAAGGTCGT
GTGTTTCCTCCGAAGTGCACATACTCTCGTTTCGTCGTTGACCCACAGCTGCTAATGATGCCAGAGACAATCCAGCCACG
AAACGTGGGCTCATGGCAAGAGCAGCAGCCTAACTAACAGCACCACTTCTTTAGTTCTTTCTTCGGTAATTGCCTAGCAA
ACAACACTACTCAATCATACACTTTCAAGAATGCGTTATGGGAGTGAGAGCGCCAAGCATAACCGAACGCCCAGGTGCCT
TTGCGCCTGCAGCAGTTGCGCGAATCTGATACTCTCGAGCTCGTACGATTATAAAATGGCGAGACATACATGCTCTGCTT
GTGATGCTCATCGCGTGATGAGTTTGTTTCTCCATAGGAGATCGGATATGGCGTTTCCCCTGGTTGCTCTGTTTTTCATG
ATCTCGG-TAGGTGGTGCCTGGAGGTCGCTCATGCCGGACGCCAGGTGTTCGACGTTATGGACTTCGGCGCTATCGCCGA
CGGAGAGACGGATGACTCCAAGGTAATCGGTTGTCGCGGTTTAACCATGCATTCGTGCCACGAGGAATATGCAAGTTAGG
GGCCTCCTTCTCTCCAGGCTTTTATAAGGGCGTGGATGAAGGCGTGCGCGGGTCGCCGGGGAGGCCGGCCGTCGTGGTCC
CCAAGGGCGAGTACCGGCTCCAGCCGGTGGTCTTCCGCGGCCCGTGCAAGGGCTACATGCAGGTGCGCGTCGCCGGCGAC
CTCCGCGCACCGGATGACCTGGCCGCGTTCCGGGGCAGCCACGATTGGATCAACTTCGCCAGCATCGACGGGCTGCTCGT
CACGGGCGGCGGCACGTTCGACGGCCGCGGCGCGTCGTCGTGGCACCTCAACCAGTGCCCAACGAATCCGAACTGCAAGC
CCCTCCCCGTCGTAAGCCGCGCTAATTTCTCACTGTTTCAC-------TCTAAACTGAGCTGCTGGGCCGACATCGTGAT
ATGATACGACTTCTCCTTAACCGTTTCTCGGGACTCTGCTCCGGCCCCGGCAGTCCATAAAACTCGGGCGCGTGAGGAAC
GTGACCGTCACGGGGGTGACATCGCTGGACAGCAAGTTCTTCCACGTGATCATCATCGGCAGCCAGGACGTGTCCATCCA
TGGCGTCACCATCCGGGCGCCGCGGGACAGCCCCAACACGGACGGTGTCCACATCCAGGGCTCCTCCAACGTGCGCATCA
CCGACACGGCCATCGCCACGGGGGACGACTGCATCTCCGTCGGCCCGGGGAGCGCCGACATCACCGTGTCCGGGGTGTCC
TGCGGACCCGGCCACGGCATCAGCGTGGGCAGCCTCGGGAGGCACCCAGGCGAGGAGGACGTGCGCGGGCTGCGCGTGTC
CAACTGCACCCTCGCCGGCACCGCCAACGGCGTACGCATCAAGACTTGGCGCGGCGGGCTCCGTCCGGGCTCCGTCGTGT
CCGGTCTCGTCTTCGAGGACATCGTCATGAGGAAGGTCCGGAACCCCATCATCATCGATCAGGAGTACTGCCCCTACAGC
TCCAGCTCCTGCCGCCATGAATCGGTCAGAGCCACAGTTGTTAATTTCTTGTCAAATCCAGACACCGATCTTACGGTTTT
AGCCTAACAGAATTATTCGTGCAGGCGCAGCGGCCGTCCGTGGTGAAGATAAGCGATGTAAAGTTCAAGAACATCAGGGG
CGTGTCGGCGACCCAGGTCGCGGTGAAGCTGTCGTGCAGCGGCGCGAGCCCGTGCCATGGACTGGAGCTCAGGGACATCG
ACCTGACGTACGTCAAGCGCGGCGTCGCCACAGAGTCGCGGTGCGAAAACGTCGCCAGTGGTATCGCCGGCGGCATGCTC
GTACCTCCCTCATGTATATGAGTGCTGTA-ATCGTATCGATCTAGTCACCGATCGGATAGTAGTAGGACTAAAAAGCATG
ACACGCCAAAGATTTTGCTTCTTTCCTCTGAACGATACTG----TTTTTTCATAATGGGTGGATTTCATTGACTCAAAAT
GACGCATTAAAATGTATATAAACAGAACGAGCAAGCACTTACCTCGCCTTTGTATATACCCAAAGTCTAAAAAGTGGCCG
CGTGTTAAATGAAAAGAACGAGCGACCGGCTCTGTCATACACATGCATGCG-AGG-TTTTG-TCTACTAGTGCACGTGAT
TGGTCATTAAATGCTTTCAGATTTATTATATCCAGTGGACAACAAAGCAAATTCATGTATATTTATTCCGGTTCTTCAAT
TTTTTAAAAGTCATATCTTTCAAACCACGTGTGGGAATTCAGATCCGTCTTCACCGTTGGGTTCGTCGTGACGAGATCTT
TGAAACTAGATCCCATATGGATATGTTTCAATAATTTTTTTATGC-------------------------CAACTTTAGT
ACTGTATTATGCAACTTTAGTACTACATCGTGCAACTGTTTTCC-AAAACTAATGTTTGGAG-TTGCATCTTCGTATGAG
GTTGCAACCTAGCAACCATGACAACTTTGATGAGCAACTAGTCTATTACCTCGACGAAAGTCGATGTGCAACC-ACTCTT
ATAATGTAGTTTACTCGCACACATATTGATGTTTAGTTGGCTTATAATGTAGTCTAGTTGCGCACACATTGATGTTTAGT
TGGCAGAA-----AGACTAGTTGCACACATAT--GTGCTCAGTTGCCTT-------------------------------
-------------------------------------------------GTAATTTAGTCTAGTTGCACAC-ACATTGAT
GTTTAGTTGGCAGGACA-CTA---GTTG-----CATACACATATGCTCAGTTGGCGCGACAATATAGTCTAGTTGCACAC
ATTGATATTTAGTTGGCAGGACTATTTGGCACATATATGCTCTGTTGACGCAGCAATCTAGTCTAATTGCACACACATTG
ACGTTTAGTTGGCAGGACACTAGTTGCACACACA
>chr7D_13
------------TATTATTATGAAGCAAATTTCAGCCACCGAACAAATTCGA-CCCAAAAAACCCGATGCGGCACGTACC
TCGCGACAGTAGCTCTACCAGGCAACCACTTACCCTATGGTAAAAGACAAAAACAAACCGAAAAGTATACAACTCCTAGG
CTAAGGCTACAAGAAGGAAACCATGCACGGACGCCGATGGTGATGAGTGCAACCATAGATCGGTTTCGGGATTTTGATCC
CCAAAATCAAGATTCGATCCATCACCATCAGCAAGAACAGATGCTGACGCGTGTCGACATATAGTCTAACCAAAGGTCTT
GTGTTTCCTCCGAAGTGTACC----GTCGTTTCGTCGTTGACCCACAGCTGCTAATGATGCCATAGACAATCTAGCCACG
AAACGTGGGCTCATGGCAAGAGCAGCAGCCTAACTAACAGCACCACTTCTTTACTTCTTTCTTCAGTAATTGCCTAACAA
ACAACAGTACTCAATCATACACTTTCAAGAATGCGTTATGGGAGTGAGAGCGCCAAGCATAACCGAACGCCCAGGTGCCT
TTGCGCCTGCAGCAGTTGCGCGCATCTGATGCTCTCGAGCTCGTACGATTATAAAATGGCGAGACATACATGCTCTGCTT
GTGATGCTCATCGCGTGATGAGTTTGTTTCTCCATAGGAGATCGGACATGGCGTTTCCCCTGGTTGCTCTCTTTTTCATG
ATCTCGGCTAGGTGGTGCCTGGAGGTTGCCCATGCCGGACGCCAGGTGTTCGACGTTATGGACTTCGGCGCCATCGCCGA
CGGAGAGACGGATGACTCAAAGGTAATCGATTGTCGCGGCTTAACCATGCATTCGTGCTACGAGGAGTATGCAAGTTAGG
GGCTTCCTTCTCTGCAGGCTTTTATAAGGGCGTGGATGAAGGCGTGCGC--GTCGCCGGGGAGGCCGGCCGTCGTGGTCC
CCAAGGGCGAGTACCGGCTCCAGCCGGTGGTCTTCCGCGGCCCGTGCAAGGGCTACATGCAGGTGCGCCTCGCCGGCGAC
CTCCGCGCACCGGACGACCTGGCCGCGTTCCGGGGCAGCCACGAGTGGATCAACTTCGCCAGCATCGACGGGCTGCTCGT
CACGGGCGGCGGCACGTTCGACGGCCGCGGCGCGTCGTCGTGGCACCTCAACCAGTGCCCAACGAATCCGAACTGCAAGC
CCCTCCCCGTCGTAAGCCGCGCTAATTTCTCGCTGTCTCAC-------TCTTAACTGAGCTGCTCGGCCGACATCGTGAC
ATGATAGAACTTCTCCTTAACCATTTCTTGGGACTCTGCTCCGGCACCGGCAGTCGATAAAGCTCGGGCGCGTGAGGAAC
GTTACCATCACGGGGGTGACGTCGCTGGACAGCAAGTTCTTCCACGTGATCATCATCGGCAGCCAGAACGTGTCCATCCA
TCGCGTCACCATCCGGGCGCCGCGGGACAGCCCCAACACGGACGGCGTCCACATCCAGGGCTCCTCCAACGTGCGCATCA
CCGACACGGCCATCGCCACGGGGGACGACTGCATCTCCGTCGGCCCGGGGAGCGCCGACATCACCGTGTCCGGGGTGAAC
TGCGGACCCGGCCACGGCATCAGCGTGGGCAGCCTCGGGAGGCACCCAGGCGAGGAGGACGTGCGCGGGCTGCGCGTGTC
CAACTGCACCCTCGCCGGCACCGCCAACGGCGTACGCATCAAGACTTGGCGCGGCGGGCTCCGTCCGGGCTCCGTCGTGT
CCGGTCTCGTCTTCGAGGACATCGTCATGAGGAAGGTCCGGAACCCCATCATCATCGACCAGGAGTACTGCCCCTACAGC
TCCAGCTCCTGCCGCCATGAATCGGTGAGAACCACAGCTGTTAATTTCTTGTCAAATCCAAACACCGATCTTACGGTTTT
ACCCTAACAGAATTATTCATGCAGGCGCAGCGGCCGTCCGTGGTGAAGATAAGCGATGTAAAGTTCAAGAACATCAGGGG
CGTGTCGGCGACCCAGGTCGCTGTGAAGCTGTCGTGCAGCGGCGCGAGCCCGTGCCATGGACTGGAGCTCAGGGACATCG
ACCTGACGTACGTCAAGCGCGGCGTCGCCACAGAGTCGCGGTGCGAAAACGTCGCCGGTGGTATGGCCGGCGGCATGCTC
GTACCTCCCTCATGTATATGAGTGCTGTAGATCGTATCGATCTAGTCACCGATCGGATAGTAGTAGGACTAAAAAGTATG
ACACGCCAAAGATATTGCTTCTTTCCTCTGTACGATACTGTTTTTTTTTTCATAATGGGTGGATTTCATTGACTCAAAAT
GACGCATTAAAATGTATATAAACAGAACGAGCAAGCACTTACCTAGCCTTTGTATATA----------------------
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>chr7B_146
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CTAAGGCTACAAGAAGGAAACCATGCACGGACGCCCACGGTGATGAGTGCAACCATAGATCGGTTTCGGGATTTTCATCC
CCAGAGTCAAGATTCGATCCATCACCATCAGCAAGAACAGATGTTGACGCTTGTCGACAGATAGTCTGACCAAAGGTCTT
GTGTTTCCTCCGAAGTGCACATACTGTCGTTTCGTCGTTGACCCACAGCTGCTAATGATGCCATAGACAATCTAGCCACG
AAACGTGGGCTCATGGCAAGAGCAGCAGCCTAACTAACAGCACCACTTCTTTAGTTCTTTCTTCAGTAATTGCCTAACAA
ACAACACTACTCAATCATACACTTTCAAGAATACGTTATGGGAATGAGAGCGCCAAGCATAACCGAACGCCCAGGTGCCT
TTGCGCCTGCAGCAGTTGCGCGCATCTGATGCTCTCGAGCTCGTACGATTATAAAATGGCGAGACATACATGCTCTGCTT
GTGATGCTCATCGCGTGATGAGTTTGTTTCTCCATAGGAGATCGGACATGGAGTTTCCCCTGGTTGCTCTGTTTTTCATG
ATCTCGGCTAGGTGGTGCCTGGAGATCGCTCATGCCGGACGCCAGGTGTTCGACGTTATGGACTTCGGCGCCATTGCCGA
CGGAGAGACGGATGACTCAAAGGTAATCGATTGTCGCGGCTTAACCATGCATTCGTGCCACGAGGAATTTGCAAGTCA-G
GGCTGCCTTCTCTGCAGGCTTTCATAAGGGCGTGGATGAAGGCGTGCGC--GTCGCCGGGGAGGCCGGCCGTCGTGGTCC
CCAAGGGCGAGTACCGGCTCCAGCCAGTGGTCTTCCGCGGTCCGTGCAAGGGCTACATGCAGGTGCGCCTCGCCGGCGAC
CTCCGCGCACCGGACGACCTGGCCGCGTTTCGGGGCAGCCACGAGTGGATCAACTTCGCCAGCATCGACGGGCTGCTCGT
CACGGGCGGCGGCACATTCGACGGCCGCGGCGCGTCGTCGTGGCACCTCAACCAGTGCCCAACGAATCCGAACTGCAAGC
CCCTCCCCGTCGTAAGCCGCGCTAATTTCTCGCTGTCTCACTCTTAAGTCTTAACTGAGCTGCTCGGCCGACATCGTAAC
ATGATAGAACTTCTCCTTAACCATTTCTTC--ACTCTGCTCCGGCACCCGCAGTCGATAAAGCTCGGGCGCGTGAGGAAC
GTTACCATCACGGGGGTGACGTCGCTGGACAGCAAGTTCTTCCACGTCATCATCATCGGCAGCCAGGACGTGTCCATCCA
TCGCGTCACCATCCGGGCGCCGCGGGACAGCCCCAACACGGACGGCGTCCACATCCAGGGCTCCTCCAACGTGCGCATCA
CCGACACGGCCATCGCCACGGGGGACGACTGCATCTCCGTCGGCCCGGGGACCGCCGACATCACCGTGTCCGGGGTGTCC
TGCGGACCCGGCCACGGCATCAGCGTGGGCAGCCTCGGGAGGCACCCAGGCGAGGAGGACGTGCGCGGGCTGCGCGTGTC
CAACTGCACCCTCGCCGGCACCGCCAACGGCGTACGCATCAAGACTTGGCGCGGCGGGCTCCGTCCGGGCTCCGTCGTGT
CCGGTCTCGTCTTCGAGGACATCGTCATGAGGAAGGTCCGGAACCCCATCATCATCGACCAGGAGTACTGCCCCTACAGC
TCCAGCTCCTGCCGCCATGAATCGGTGAGAACCACAGCTGTTAATTTCTTGTCAAATCCAAACACCGATCTTACGGTTTT
ACCCTAACAGAATTATTCATGCAGGCGCAGCGGCCGTCCGTGGTGAAGATAAGCGATGTAAAGTTCAAGAACATCAGGGG
CGTGTCGGCGACCCAGGTCGCGGTGAAGCTGTCGTGCAGCGGCGCGAGCCCGTGCCATGGACTGGAGCTCAGGGACATCG
ACCTGACGTACGTCAAGCGCGGCGTCGCCACAGAGTCGCGGTGCGAAAACGTCGCCGGTGGTATCGCCGGCGGCATGCTC
GTACCTCCCTCATGTATATGAGTGCTGTAGATCGTATCGATCTAGTCACCGATCGGATAGTAGTAGGACTAAAAAGCATG
ACACGCCAAAGATTTTGCTTCTTTCCTCTGTACGATACTGTTTTTTTTTTCATAATGGGTGCATTTCATTGACTCAAAAT
GATGCATTAAAATGTATATAAACAGACCGAGCAAGCACTTACCTGGCCTTTGTATATA----------------------
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>chr6D_2350
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---------------------------------------------------------ACCCAAAATCTAAAAAATGGCCG
TGCGCTAAGCGGAGAGAACGAGCCGCCGGCTCTGTCATACACATGCATGCA-AGG-TTTTG-TCTGCTAGTGCATGTGAT
TCATCATTAAATGCTTTCAGATTTATTATATCCGGTGGACAATAAAGAAGATTCACGTATATTTATTCCGGTTCTTTAAT
TTTTAAAAAGTCATATCTTTCAAACCACGTGTCGGAATTCAGATCCGTTTTCATCGTTGGGTTCGTCGTGACGAGATCTT
TGAAACTAGATCCCATATGGATATGTTTCAATGAAATTTTTTTGATGCCAATTTTGATGATATATTTGTGCAACTTTAGT
ACTGTATTGTGTAACTTTAGTAGTACATCGTGCAACTGTTTTTC-AAACCTAATGTTTGGAG-CTGCACCTTCGTATGAG
GTTGCAACCTAGCAACCAGGACAACTTTGATGTGCAACTAGTCTATTACCTCGACGAAAGTCGATGGGCAACCTCCTCTT
GTAATGTAGTCTAGTCGCACACATATTGATGTTTAGTTGGCGTGTAATGTAGTCTAGTTGCACACACATTGATGTTTAGT
TGGCAGGA-----AGACTAGTTGCACACATAT--GTGCTCAGTTGGCTTGTAATTTAGTTTAGTTGCACATACACTGATG
TTTAGTTGGCAGGAC-ACTAGTTGCATACACATATGCTTAGTTGGCGCGGCAATATAGTCTAGTTGCACAC-ACATTGAT
GTTTAGTTGGCAGGAC---TA--TTTGG-----CA---------------------------------------------
-----------------------------CACACATATGCTCAATTGGCGCGGCAATCTAGTCTAGTTGCACACACATTG
ATGTTTAGTTGGCAGGACACTAGTTGAACACACA
>chr3A_2351
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----------------------------------------------------------CCCAAAATCTAAAAAGTGGTTG
CACGCTAAACGGAAAGAACGAGCGGCCGGCTCCGCCATACACATGCATGCG-AGG-TTTTTTTCTGTTAGTGCATGCGAT
TGATCATTAAATGCTTTCAGATTTATTATATCCGGGGAACAACAAAGCAGATTCACGTATATTTATTCCGGTTCTTTAAT
TTTTTAAAAATCATATCTTTCAAACCACGTGTCGGAATTCAGATTCGTCTTCACCGTTGGGTTCGTCGTGACGAAATCTT
TGAAAGCAGATCCCATATGGATATGTATCAATGAAAAAAATTTGATGCCAACTTTGATAATATATTTGTGCAACTTTAGT
ACTGTATTGTGCAACTTTAATACTACATTGTGCAACTGTTTTCC-AAAACTAATGTTTAGAG-CTGCACCTTCGTATGAG
GTTGCAACCTAGCAACCACGATAACTTTGATGTGCAACTAGTCTATTACCTCGACGAAAGTCGATATGCAACCTCCTTTT
GTAATGTAGTCTAGTTGCACATATATTAATATTTAGTTGGCTTGTAATGTAGTCTAGTTGCACATATATTGATATTTAGT
TGGCAGGA-----AGAATAGTTGCACACATAT--GTGCTCAGTTGGCTTATAATTTAGTCTAGTTACACATACATGGATG
TTTAGTTGGCAGGACTATTTG--GCACACACATATGATCAGTTGGCGCGACAATATAGTCTAGTTGCACAC-ACATTGAT
GTTTAGTTGGCAGGAC---GA--TTTGG-----CA---------------------------------------------
-----------------------------CACACATATGCTCAGTTGGCGCGGCAATCTAGTCTAGTTGCACACACATTG
ATGTTTAGTTGGCAGGACACTAGTTGCACACACA
>chr1B_2378
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-----TAAACGGAGAGAACGAGCGGCCGGCTCTGCCACACACATGCATGCGTAGG-TTTTA-TCTTCTAGTGCATGTGAT
TGATCATTAAAAACAGTCAGACTTATTATATCCGATGGACAACAAAGCAGATTCACGTTTATTTATTCCGGTTCTTCAAT
TTTTAAAAAGTAATATCTTTTAAACCACGTGTCAGAATTCAGATCCGTCTTTACCGTTGGGTTCGTCGTGACGAGATCTT
TGAAACTAGATCCTATATGAGTATGTTTCAATGAA--TTTTTTTATGCCAACTTTAATGATATATTTGTGCAACTTTAGT
ACTATATTGTGCAACTTTAGTACTACATCGTGCAACTTTTTTTC-AAAACTAATGTTTGGAA-CTGCACCTTCGTATGAG
GTTGCAACCTAGCAACCACGACGACTTTGATGTGCAACTAGTCTATTGCCTCGATGAAAGTCGATGTGCAGCCTCCT---
----------------------------------------CTTGTAATGTAGTCTAGTTGCACATACATTGATATTTAGT
TG------------------------------------------------------------------------------
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>chr4B_2387
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--------------AGAACGAGCGACCGGCTCTGCCACAGACATGCATGCGTAGGATTTTG-GCTGCTAGTGCATGTGAT
TGATCATTAAATGCAATCAGACTTATTATATCCGATGGACAACAAAGCAGATTCACGTGTATTTATTTCGGTTCTTTAAT
TTTTAAAAAGTCATATTTTTCAAACCACGTGTCGGAATTCAGATCCGTTTTCACTGTTGGGTTTGTCATGACGAGATCTT
TGAAACTAGATCCCATATGGGTATGTTTCAATGAAATTTTTTTGATGCTAACTTTGATGATATATT-GTGCAACTTTAGT
ACTGTATTGTGCAACTTTAGTACTACATCGTGCAATTTTTTTTCCAAAACTAATGTTTTAAGCTTGCACCTTCGTATGAG
GTTGCAACCTAGCAACCACGACAACTTTGATGTGCAACTAGTCTATTGCCTCGACGAAAGTCGATGTGCAACCTTTTCTT
GTAATGTAGTCTAGTTGCACACACATTGATGTTTAATTGGCTTCTAATGTAGTCTAGTTGCATACACATTGATGTTTAGT
TGGA-------------------------------------------TT-------------------------------
-------------------------------------------------GTAATATAGTCTAGCTGCACAC-ACATTGAT
GTTTAGTTGGCAAGAAGTCTA---GTTG-----CACACACATATGCTTAGTTGGC-------------------------
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>chr2D_2389
AATGAGC-------------------------------------------------------------------------
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----------------------GGCCGCGCTCTGCCACACACATGCATGCGTTGGATTT-G-TCTGCTAGTGCATGTGAT
TGATCATTAAGTGCAGTCAGACTTATTATATCCGATGGACAACAAAACAGATTCACATGTATTTATTCCGGATCTTCAAT
TTTTAAAAAGTCATATCTTTCAAACCACGTGTCGGAATTCAGATCCGTTTTCACCGTTGGGTTCTTCGTGACGAAATCTT
TGAAACTAGATCCCATATGGGTATGTTTCAATGAAATTTTGTTGATGCCAACTTTGATGATATATT-GTGCAACTTTAGT
ACTGTATTGTGCAATTTTAGTACTACATCGTGTAAC-TTTTTCC-AAAACTAATGTTTGGAG-TTGCACCTTCGTATTAG
GTTGCAACCTAGCAACCACGACAACTTTGATGTGCAACTAGTCTATTGCCCCGATGAAAGTCGATGCATAACCTCCTCTT
GTAATGTAGTCTAGTTGCACACACATTGATGTTTAGTTGGCTTGTAATGTAGTCTAGTTGCACATACATTGATGTTTAGT
TGGCAGGA-----AGACTAGTTACACACATAT--ATGTTCAGTTGGCTTGTAATTTAGTCTAGTTGCACATACATTGATG
TTTAGTTGGCAGGAC-ACTAGTTGCACACACATATGCTCAGTTGGCGCGGTAATGTAGTCTAGTTGCACAC-ACATTGAT
GTTTAGTTGACAGGAC---TA---TTGG-----CA---------------------------------------------
-----------------------------AACACATATGCTCAGTTGGCGCGGCAATGTGGTCTAGTTGCACACATATTG
ATGTTTAGTTGACAGGAAGACTAGTT--------
>chr2D_2389
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----------------AACGAGGGCCGCGCTCTGCCACACACATGCATGTGTAGGATTT-G-TTTGCTAGTGCATGTGAT
TGATCATTAAATGCAGTCAAACTTATTATATCTGATGGACAACAAAACAGATTCACGTGTATTTATTCCGGATCTTCAAT
TTTTAAAAAGTCATATCTTTCAAACCACATGTCGGAATTCAAATCCGTCTTCATCGTTGGGTTCTTCGTGACGAGATCTT
TGAAACTAGATCCCATATGGGTATGTTACAACAAA--TTTTTTTATGC-AACTTTGATG---------------------
-ATATATTGTGCAACTTTAGTACTACATCGTGCAACTTTTT-CC-AAAACTAATGTTTGGAG-CTGCACATTCGTATGAG
GTTGCAACCTAGCAACCACGACAACTTTGATGTGCAACTAGTCTATTGCCCCGA-GAAAGTCGATGTTCAACCTCCACTT
GTAATGTAGTCTAGTTGCACACACATTGATGTTTAGTTGGCTTGTAATGTAGTCTAGTTGCACACACATTGATGTTTAGT
TGGCAGGA-----AGACTAGTTGCACACACAT--ATGCTCAGTTGGCTTGTAGTTTAGTCTAGTTGCACACACATTGATG
TTTAGTTGGCA---------------------TATGCTCAGTTGGCTT-GTAGTTTAGTCTAGTTGCACAC-ACATTGAT
GTTTAGTTGGCAGGACA-CTA---GTTG-----CA---------------------------------------------
-----------------------------CAAACATATGCTTAGTTGGCGCGGCAATGTAGTCTAGTTGCACACACATTG
ATGTTTAGTTGACAGGAC----------------
>chr7A_2503
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-----------------------------------------------------CATGTCCATTTATTCGGGTTTTCAAAT
TTTTAAATAGCCATATCTTTTAAACCGTGCTTCGGAATTTAGATCCGTTTTCATTATTAGAATCCTCGCGACGAGATCTT
TGAAACTAGATCCCGCATGGGTATGTTTTGACGAAATTTTTTTGATGCCAACTTTGATGCTATATT-GTGCAACTCTATT
ACTGTATTGTGCAACTTTATTACTACATCGTGCAACTTTTTTTC-AAAACTAATGTTTGAAG-CTGCACCTTCGTATGAG
GTTGCAACCTAGCAACCACGACAACTTTGATGTGCAACTAGTCTATTGCCTCGACGAAACTCGATGTGTAACCTCCTCTT
GTAATGTAGTTTAGTTGCACACACATTGATGTTTAGTTGGCTTGTAATGTAGTCTAGTTGCACACACATTGATGTTTAGT
TGGCAGGA-----AGACTAGTTGCACACACAT--ATGCTCGGTTGGCTTGTAATTTAGTCTAGTTGCGCACACATTGATG
TTTAGTTGGCAGGAC-ACTAGTTGCACACACATATGCTCAGTTGGCGCGGCAATGTAGTCTAGTTGCACACCACATTGAT
GTTTAGTTGGCAGGAC---TT---TTTTTGGCACA---------------------------------------------
-----------------------------CACGCATATACTCAGTTGGCGCGGCAATCTAATCTAGTTGCACACACATTG
ATGTTTAGTTGGCAGGAAGACTAGTT--------
>chr1B_2503
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-----------------------------------------------------CATGTCCATTTGTTTGGGTTTTCAAAT
TTTTAAAAAGTCATATCTTTTAAACCGTGCTTCGGAATTTAGATCCGTTTTCACTATTGGAATCCTCGCGACGAGATCTT
TGAAACTAGATCCCGCATGGATATATTTTGACGAA-TTTTTTTTATGCCAACTTTGATG---------------------
-GTATATTGTGCAACTTTAGTACTACATCGTGCAAATTTTTCCC-AAAACTAATATTTTGAG-CTGCACCTTCGTATGAG
GTTGCAACCTAGCAACCACGACAACTTTGATGTGCAACTAGTCTATTGCCTCGATGAAAGTCGATGTGCAACCTCCTCTT
GGAATGTAGTCTAGTTGCACACACTTTGATGTTTAGTTGGCTTGTAATGTAGTCTAGTTGCAAACGCATTGATGTTTAGT
TGGCAGGA-----AGACTAGTTGCACACACAT--ATGCTCAGTTGGCTTGTAATTTAGTCTAGTTGCACACACATTGATG
TTTACTTGGCAGGAC-ACTAGTTGCACACACATATGCTCAGTTGGCGCGACAATCTAGTCTAGTTGCACAC-ACATTGAT
GTTTAGTTGGCAGGAC---TTTTTAC-----CACA---------------------------------------------
-----------------------------CACACATATGCTCAGCTGGCATGGCAATCTAGTCTAGTTGCACACACATTG
ATGTTTAGTTGGCAGGACTTTTTG-GCACACACA
>chr6A_2503
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-----------------------------------------------------CATGTCCATTTATTCAGGTTTTCAATT
TTTTAAAAAGCCATATCTTTTAAACCGTGCTTCGGAATTTAGATCCGTTTTCACTATTGGAATCCTCGCGACGAGATCTT
TGAAACTAGATCCCGCATAGATATGTTTTGACAAAAAAATTTTGATGCCAACTTTGATG---------------------
-CTATATTGTGCAACTTTATTACTACATCGTGCAACTTTTTTTC-AAAACTAATGTTTGGAG-CTGCATCTTCGTATGAG
GTTGCAACCTAGCAACCACGACAATTTTGATGTGCAACTAGTCTATTGCCTCGACGAAAGTCGATGTACAACCTCCTCTT
GTAATGTAGTCTAGTTGCACACACGTTGATGTTTAGTTGGCTTGTAATGTAGTATAGTTGCACACACATTGATGTTTAGT
TGGCTTGTAATGTAGTATAGTTGCACACACATTGATGTTTAGTTGTCTTGTAATGCAGTCTAGCTGCACACACATTGATA
TTTAATTGGCAGGAAGACTGGTTGCACATATATATGCTCAGTTGGCGCGGCAATCTAGTCTAGTTGCACAC-GCATTAAT
GTTTAGTTGGCAGGACA-CTA---GTTG-----CA---------------------------------------------
-----------------------------CACACATATGCTCAGTTGGCGTGGCAATCTAGTCTAGTTACACACACATTG
ATGTTTAGTTGGCAGGAAGACTAGTT--------
>chr4A_2504
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------------------------------------------------------ATGTCCATTTATTCGGGTTTTCAAAT
TTTTAAAAAGCCATATCTTTTAAACCGTGCTTCGGAATTTAGATCCGTTTTTACTATTGGAATCCTCACGGCGAGATCTT
TGAAACTAGATGCCGCATGGGTATGTTTTGACG--ATTTTTTTGATGCCAACTTTGATGCTATATT-GTACAACTCTATT
ACTGTATTGTGCAACTTTATTACTACATCGTGCAACTTTTTTCC-AAAACTAATGTTTGGAG-CTGCACCTTCGTATGAG
GTTGCAACCTAGCAACCACGACAACTTTGATGTGCAACTAGTCTATTGCCTCGACGAAAGTCGATGTGCAACCTACTCTT
GTAATGTAGTATAGTTGCACACACATTGATGTTTAGTTGGCTTGTAATGTAGTCTAGTTGCACACACATTGATGTTTAGT
TGGCAGGA-----AGACTAGTTGCACACACAT--ATGCTCAGTTGTCTTGTAATTTAGTCTAGTTGC--ACACATTGATG
TTTAGTTGGCAGGAC-ACTAGTTGCACACACATATGCTCAGTTGGTGCGGCAATCTAGTCTAGTTGCACAC-ACATTGAT
GTTTAGTTGACAGGAC---TTTTTTTGG-----CA---------------------------------------------
-----------------------------CACACATATGCTCAGTTGGCACGGCAATCTAGTCTAGTTGCACACACATTG
TTATTTAGATGGCAGAAAGACTAGTT--------
>chr4A_2510
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------------------------------------------------------------ATTTATTCGGGTTTTCAAAT
TTTTAAAAAGCCATATCTTTTAAACCGTGCTTCGGAATTTAGATCCGTTTTTACTATTGGAATCCTCAC-GCGAGATCTT
TGAAACTAGACCCCGCATGGGTATGTTTTGACG--A--TTTTTTATGCCAACTTTGATGTTATATT-GTACAGCTCTTTT
ACTGTATTGTGCAACTTTATTACTACATCGTGCAACTTTTTTCC-AAAACTAATGTTTGGAG-CTGCACCTTCGTATGAG
GTTGCAACCTAGCAACCACGACAACTTTGATGTGCAACTAGTCTATTGCCTCGACGAAAGTCGATGTGCAACCTACTCTT
GTAATGTAGTATAGTTGCACACACATTGATGTTTAGTTGGCTTGTAATGTAGTCTAGTTGCACACACATTGATGTTTAGT
TGGCAGGA-----AGACTAGTTGCACGCACAT--ATGCTCAGTTGTCTTGTAATTTAGTCTAGTTGC--ACACATTGATG
TTTAGTTGGCAGGAC-ACTAGTTGCACACACATATGCTCAGTTGGAGCGGCAATCTAGTCTAGTTGCACAC-ACATTGAT
GTTTAGTTGACAGGAC---TTTTTT----GGCACA---------------------------------------------
-----------------------------CACACATATCCTCAGTTGGCACGGCAATCTAGTCTAGTTGCACACACATTG
TTGTTTAGTTGGCAGAAAGACTAGTT--------
>SNPs
SSSSSSSSSSSS-------------S-----S------S-----------S-S--S---------S--------------
------------------------------S-------S-------------S-----S-----S----------S----
------S----S---------------S--------------------SS---S--------------------------
-------S-------------------------S--------S--S--------------------S--S--------S-
-------------------------S-------------------------------------S--------S-------
----------------------------------------------------------------S-----------S---
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----------------------S-------S-------------------------------------------------
----------------------------------------------S---------------------------------
-----------------------------------------------------------------------S--------
------------------S----------S---------S----------------------------------------
---S---------S-----------------------------------SS-----------------------------
--------------------------------------------------------------------S-----------
--------------S-----------------------------S-----------------------------------
--------------------------------------------------------------------------------
-------------------------------S----S--------------S------------S--------------S
------SS--------------S-----S----------------S---------S-----S------------------
--S---S-------------S-----------------------------------------------------------
-S-------------------------------------------S----------------------------------
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----------------------------------------------------------S---------------------
--------------------------S---S------S----------------------S-------------------
-S----------------S-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
------------------------------S-------------------------------------------------
--------------------------------------------S-------------------S---------------
--S-S----S-S-----------------------------------------------------S--------S-----
--S------------------------------S---------------S------------------------------
--------------------------------S-----------------------------------------------
----------------------------------SS-----S--S-----------------------------------
--------S-----------------------------------------------------------------------
------------------S-------------S-----------------------------------------------
S------------S-----------------------------S-----------------S------------------
------S--------------------------------------S----------------------------------
--------------------------------------------------------------------------------
-----------------------------------S-----------S-------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S--------S----S---S-------------S--------------
-S--------------------------------
>forward_819
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-------------------------------------------------------------------------------A
CGGAGAGACGGATGACTCC-------------------------------------------------------------
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>reverse_2385
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----------------------------------------------------------------GTCTAAAAAGTGGCCG
CGTG----------------------------------------------------------------------------
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----------------------------------
