>input_sequence_59041
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----------------------ATGACCGACCTCATCGAGGAGGAGAGCGCTGACTTCATGGCTCGGCTGCATGAGCGCT
CCGGGATCGGCGAGGAGACGAGCGTGCCCAATTCTTACCGCTATATGCCCCCCAAGCGCGGCGTGGAGGCTTCCCGGGAG
GAAGCCGAGCTGGTCATCTTCTCCGCCGTCGACAAGGTGCTGGCAAGGACGACGGTGAATCCCGAGGACATCGACACACT
CATCATCGCCTGTAGCTTCACCACGCTGACACCGGTGTTCGCCGACGTGGTCGTCAACAAGTACAAGCTCCGCGCGGACG
TGCAGAGCGTGAACCTGTCCGGGATGGGGTGCAGCGGGGCGCTCATCTGCGTCGGCCTCGCCGAGAAACTCCTGCAGGCT
GCACCACCAGGGAAGCACAAGCACGTGCTGATCATAGCCACCGAGATCCTGTCGTCGATGATGTACCACGGCACCAAGCG
CGAGATGCTTGTGCCCAATGTGCTCTTCCGCATGGGCGCCGCCGCCATGATCATGACCAACTCACCGGAACGCGCGCGGT
TCCGGCTCGGTCCGATCGTGCGCACGCTGACCGCTGCCCGGGACAGCGACTACCGATGCGCATTCCAGGAGGAGGACGAC
AAGGGGATCACGGGCATCAACCTCTCCAAGGAACTTCCCGTCGTTGCTGCGAACGCGCTCAAGAGTCACATTGTCACCTT
CTGTCCCCGGGCCCTGCCTGCCTCGGAGCTTCTCCGGGTCGCCTTCTCCCTCGTCAAGCAGTACGTGTTCCCGCTCCCGG
GCGCGCGTGGGCGTGCGGAGAAGGGCGCGCGGCCGGCCTTCAACAAGGTGTTCCAGCACTTCTGCATCCACCCGGGCGGG
CGCAGGGTGCTCCAGGAGGTGCAGCATGGCCTCGGCCTCTCTGACCGTGACATGGAGGCGTCGCACATGACGCTGCACCG
GTTCGGGAACATGGCCAGCAGCTCGTTGCTGTACGAGCTGGCCTACATCGAGGCCAAGGGCCGGATGACCGAGGGTGACC
GGGTGTGCATGATCTCCTTCAGCCCCGGCATAGACTGCAGCAGCGTCGTATGGGAGTGCATCAACCCGGCGGCGGCAGAT
CCCAACGGACCCTGGGCCGCCTGTATCCACCGCTACCCTGTGCAGGTCAAGACGACCTAA--------------------
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>chr5B_1_TraesCS5B01G010500
GATCTGGTGTTGGTGGGCGAGTACGGTGTAGGTATGGGAATACGAACGAAGCCGAAGGGTCGAGGGCACGAAGCGTAGCG
TTTACAAGGACGAAATCAAGGTCTTCGGGTTGTCCTAACCAAACATGGCGACCAACCCCCAACTTGAGTACATGCTTGGT
GAGATTATGCGCCTCAACATTTGAGGTCTTAAACTCGTGTTTAAAAATAGAAGAAACAAAATACGACGACCACTCTATGA
TTTCATGTATCACAGCTCCAAAGCTTTGCCGAACTTCCACTTTTTATATAGCTTCAATAATGACTTTACT---AGATGCC
ACCACCGTCCTATGCATGTACAGATCCGAGCCCAGGGCAAATCAATGCAAGCGCTACTTCAAAAAATCTAATGTCATCGT
GTAAAGCTTGCCGAACTTCCACTTTTTATAAAGCTTCAATTCAATCTGAGGCCAGGGTAAATCAAATCAATGCAGATTTC
C-------------------------------------------------------------------------------
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---------------------------------TATGAAATTCCTCCAAACAGAAGAGGCCTAAAACTTATAAACTACTA
GAAG--TAACTTGTTTAGACCTTTTTTTAAAATAGTACAATGGTAGATGCTTGCATAGACGCAGATCATTGAAATTACCA
CAAGCGGCTCACAATCGACGGGAATGTCACATCCCACTGAACAAAGATTGT--CGGAAAGTCTGAAATTAATCTAGAAAA
ATGTGAGTATGAGTGCCAAATCTAATACTTGAACCCTGGTGGGCTTTTTGCACCACAATACGCTCAGTAAGTTTAACCAT
TTGAGATGCGCTCAGTTTTTTTCTTGTTTGCAAGAACACATAGATTCGCCACCAGTTACATGATGTCGGCGAGATTAGCT
AGTGATGCGAT-----------------------------GAGTGGCATCTTGAGGTTGTGAACTGTAGTGGAGTGGCAG
CGACGAACAGCCACCACTGGACGTGGCCATTGTTGCAGTATGGGAGCGGAGCTAGGTCTTTGAGGTACTCCATCGAGGAA
GCCACCACAGTATGGGAG--------------------------------------------------------------
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------------CGGACGCCTCATGACCGACCTCATCGAGGAGGAGAGCGCTGACTTCATGGCTCGGCTGCATGAGCGCT
CCGGGATCGGCGAGGAGACGAGCGTGCCCAATTCTTACCGCTATATGCCCCCCAAGCGCGGCGTGGAGGCTTCCCGGGAG
GAAGCCGAGCTGGTCATCTTCTCCGCCGTCGACAAGGTGCTGGCAAGGACGACGGTGAATCCCGAGGACATCGACACACT
CATCATCGCCTGTAGCTTCACCACGCTGACACCGGTGTTCGCCGACGTGGTCGTCAACAAGTACAAGCTCCGCGCGGACG
TGCAGAGCGTGAACCTGTCCGGGATGGGGTGCAGCGGGGCGCTCATCTGCGTCGGCCTCGCCGAGAAACTCCTGCAGGCT
GCACCACCAGGGAAGCACAAGCACGTGCTGATCATAGCCACCGAGATCCTGTCGTCGATGATGTACCACGGCACCAAGCG
CGAGATGCTTGTGCCCAATGTGCTCTTCCGCATGGGCGCCGCCGCCATGATCATGACCAACTCACCGGAACGCGCGCGGT
TCCGGCTCGGTCCGATCGTGCGCACGCTGACCGCTGCCCGGGACAGCGACTACCGATGCGCATTCCAGGAGGAGGACGAC
AAGGGGATCACGGGCATCAACCTCTCCAAGGAACTTCCCGTCGTTGCTGCGAACGCGCTCAAGAGTCACATTGTCACCTT
CTGTCCCCGGGCCCTGCCTGCCTCGGAGCTTCTCCGGGTCGCCTTCTCCCTCGTCAAGCAGTACGTGTTCCCGCTCCCGG
GCGCGCGTGGGCGTGCGGAGAAGGGCGCGCGGCCGGCCTTCAACAAGGTGTTCCAGCACTTCTGCATCCACCCGGGCGGG
CGCAGGGTGCTCCAGGAGGTGCAGCATGGCCTCGGCCTCTCTGACCGTGACATGGAGGCGTCGCACATGACGCTGCACCG
GTTCGGGAACATGGCCAGCAGCTCGTTGCTGTACGAGCTGGCCTACATCGAGGCCAAGGGCCGGATGACCGAGGGTGACC
GGGTGTGCATGATCTCCTTCAGCCCCGGCATAGACTGCAGCAGCGTCGTATGGGAGTGCATCAACCCGGCGGCGGCAGAT
CCCAACGGACCCTGGGCCGCCTGTATCCACCGCTACCCTGTGCAGGTCAAGACGACCTAAGGCCAGGTTCGCTTCTTTTT
AGAGCCTTGGCTTATGCATAATTAAGCTGCAGTGTGCAGTGAAAATAAGCTCATGAGAATAAAGCATCCACTTCTTTTCT
GCTCCTATCTACTACCTTCGTCTGGAAATACTTGTCATCAAAATGAATAAAAAAGATGTATCTAGACGTATTTTAATTCT
AGATACATCTATTTTTATCCATTTTGATGACGAGTATTTTTGGACGGAGGGAGTATTAGGTGTAAAGTCAGTAGTACTAA
TATCGGTGCACTGTAATTCTGTTCTCATTGAAATAAATTATATTTCCGAATTTCGTGAAATGTTACGATTTTCTTTTTTT
GCGGAGATGAAATATTACAAGTTGAACCGATGAAAGATCATTGTCACACATACGAACGCCATAACGAACGTGAATTGCTC
CTTACAGTTTAGCAGCCGTATGGAGGCAAATCAATCAAGAGGACAAGAATTCTGGTGTGGCTATACGTCAGTCAGCTGAA
AGAAAGTTTGGGGTCAGTCGATTTTTCTCAACCGTCGGATGCGAAATCAACGGCCTGCACCTTACTTCAACCTCCAACCT
TTGTTCCTCCTATCGCCAGCCTAACCGCCATCCCCCGCGGCCCGTGGCGCTCCTGCGACCGCCTTGCCACCCCGCTCTAC
CTTGAACCGCCCTCCACCGCGGGGCTTGTTGTCGCCCCCGGCAATCCCCTAGCCCCGCCTGCGGCCCGTGTCCAGTTTTT
GGGGTTTCTATATTCATTTTCGCTTCTGCAAAAAAATAATATGAAAACAAATATGGTAGCATCAGTTCCGTCCGTTTCCG
CTCCGATTTCATCCGTAGTGTCTTGAAACTTTTGTTTGTCGGGGTCAGCCAACAAAACTATATTATGGCGAGGTGCCTCG
ACTTAGGCATGTGAGTTTGAACTTCATGCAAATTGGAGATAACGGCAGAATTACTAGCTTCAGCTCGAGCAGGTAAGAAA
TGTAAAGTTGACTCACGATA
>chr5D_1
GATCTGGCGATGGTGGGCGAGTACAGCGCAGGTACGGGGATATGAACAAAGACGAAGGGTCGAGGACACGAAGCGTAGCG
TTTACGGGGACGAAATCAAGATCTCTGGGTTGTCCTAACCAAACATGACGGCCAATTCCCAACTTAAGTACATGCTTTGC
GAGATTATGCTTT--AACATTCGAGGTCTTAAACTTGTGTTTAAAAACAGAAGAAAGAAAATACGGCTGCCACTCTATGA
-TTCATGTATCACAGCTCCAAAGCTT-GCCGAACTTCCACTTTTTATAGCTTC---ATAATGACTTTACAGTCAGATGCC
ACCACCGTCCTATGCATGTACAGATCCGAGGCCAGGGCAAATCAACGCTAGCGCTACTGCTATGTTGTACTACATGGAGT
GGTGCTCAGACAATATAAATGCATCAATCATTAATTTAAAGACGCCGACAACGTCCACAGATGTGGGCATTAAAGGGTCT
GCCCACACGTTTTGTGTGGTGTCTAAGAGGATCAGCCCACATACCTACATGTGGGCAAAACAAGTAATGCCCACACGCTT
TTTTTTTCCTCCCGGTCCCTCTCACACGCCTACGTGTGGGCAAAATAGATAATGCCCACACGCCCATACGTCAGGCCTCC
TACCTCATGGTCCCGCACGCCCCGCGTGACAGTCACCATGCGCCCCGCAGTTGCCATGGTCCGGATCTCTCTTCCATGTT
CGTTTAACTGCAGTTGCCATGTCACTGAACTACAGTTGCCATGTTGGACAACTATAGTTATCATGGTTGCTCAACTGCAG
TTGCCATCTCAGGTCAAGTGCCAGATGCCATTTTTGGACAACTGCAGATGTTGCCATGTATGGTCTGGTTTACTATAGTT
GCCATGATTTGAAAATTTTAGGGGTTGCCACCTACTAACACTAGGCAGTTGTCATGTATGTTCTGATTTACTACAGTTGC
CATGATATGAAAACTTTAGGAGTTGCCACCTACTAATACTAGGCAGTTGCCGTGTAGCGCTACAAAGAAACATGGCAAAA
TAACATGTTCTGGTAAAGAGAGAGTTGCCATTTGCTTACAAGCACACTAGGGCAGTTGCCATGTACCCTGCAAAACACAT
GGCAACTGACATATTCGGGTAAAAGAGAGAGTTGTCATCTGCTTACAAGCACACTAGGGTAGTTGCCATGTACCCTGCAA
AACACATGGCAACTGGCAGCTTTGGTTGTGGGAGAGGAGACGGGCGTTTGGGCGAACTGATAACTGCCCACACACCAGCC
CCTGTGCGTGAGTGAAAACTGACGTGTGGGCGAACTGCTAAACGCCCATACACCGGTCCCTCCGTATGGTGAAAACGAAA
GCATGGATGACCGGATGAATGCCCACACACCAGCCCAGTCCTACGTGGCAGCACAAACATGCCAAGATTCGTGCAACCAC
AAACAGACGTGGATCCACGCGTGTGGGCGAGATGCAAACGCCCACACGTATTTCCGTAATTTAATACACGTCATAAGATC
TTTCTCATGGAGTCTAAACAAAATATTTTTTTTAGAAATAATTCCTTTATAAGAATAGGATTCTATTCCTACAAACTAAA
GGGCCCTATAAAAATTCTTGCATAGCAATCATATATCAAATTCATCGAAACGGAAGAGGCCTAAAACTTATAAAATACTG
GAAATATAACTTGTTTAGACCTTTTTTTAA--TAGTACAATTGTAGATGCCTACATAGACACGGATCAGCTAAATCACCA
CAAGCAGCTCACAATCGATGGGAGGGTCACCTCCCACTGAACGAACATATCGGCGGAAAGTCTGAAATAAATTTAGAAAA
ATGTGAGTACGAGTGCCAAATCTAATACTTGAACCCCATCG------TTGCACCACAATACGCTCATTAAGTTTAACCAT
TTGAGATACGCTCAGTTTTTTTCTTGTTTGCAAGAACACATAGATTCCCGACCAGTTACAGGACGTCGGCGAGATTAGCT
AGTGATACGATGAGTAGCATCTTTTTCTGCAAAAAAAAAAGAGTAGCATGTTGAGGTTGTGAACTGTAGTGGAGCGGCAG
CGACGAATAGCCACCACTGGACGTGGCCATTGTTGCAGTATGGGAGCGGAGTTAGGTCTTTGAGGTAGGTAGGACCGACA
GAGGCGCAACCGAGGAAGTAGAACTAAGCATGGAGTGGCCTGGTGCCCTGGTCCGTGGAAGAAGAACATGTATCCCTGAT
TTGCTAACAAAGGAGAACACGGAAGATTCAGCTTAGCGAGCAGCTCTGGAAGCTAGCGAGCGTTCTTCGCAGCCATAAGG
AATGGGCAACAGTCCATTCTTCGAGTTTAGAAGAACGAGCACATACGAGTGCTGGTGGTTTGGGGGTGGAGGTTGGGCCG
GCCGGTGAGACCAAGTACATTGCCATTACATGAATAAATTGCAACCAATGAGTCAATGACGCGGCTACTCCCAACTAAAC
ATGTCCTCGATCCCTTCAATTCATGCCCACGGCCTCCCGATAAATACCAATATACCATTGGCTTTCCATTTAAATCTCCA
CCACCTCCACACCCTCAAATGCACCAATCTGAGAAGGTGTTTGGTTCCAGGGACTTTTTGTGTTGGAACTAGAAAAAGTC
CCAAGCAAATTAAACAGGGTGGAACCTTTTTAGGACTTTTTGCTAAAAATCCTTAGAAGCATCTCCTTGAGAGTCTTTTT
CAAAAAATAATAGAGAGTAGAAAACCAAACACCACCTGAATCTCCCCCAAGATTACGTTGGCAACTGCATGCTCGCATAG
AGAGCCACGCATCGTGCATATCACCGTGATGGTGGCAGGAGCTACTATGGCCGTGCTTCAGAGAGCATCGACAGCCAGCA
CCGACTTTTTTGTGGGTTTGCTTCCGGTTCACGTCCTAATGGTAGTGATCCTGGTGTCCGGCATGGCCATGCTGTGGCGG
GTTAGCCGGGCGCGGGACGTGTACCTCGTGGACTACGGCTGCTTCCTGGGCGAGCCACGTTACAGGATCCCCTCGGCGAT
GGCCCTGGAGCACGCACGCCTCATGACCGACATCATCGAGGAGGAGAGCGCCGACTTCATGGCTCGGCTGCATGAGCGGT
CCGGGATCGGCGAGGAGACCAGCGTGCCCGACTCGTACCGCTATATGCCCCCCGAGCGCGGCGTGGAGGCTTCCCGGGAG
GAAGCCGAGCTGGTCATCTCCTCCGCCGTCGACAAGGTGTTCGCGAGGACCACGGTGAACCCCAAGGACATCGACACGCT
CATCGTCGCCTGTAGCTTCACCACGCTGACGCCGGTGTTCGCTGACGTGGTCGTGAACAAGTACAGGCTCCGCGCGGACG
TGCAGAGCGTGAACCTGTCCGGGATGGGGTGCAGCGGGGCGCTCATCTGCGTCGGCCTCGCCCAGAAACTCCTGCAGGCG
GCGCCGCCAGGGAAGCACAAGCACGTGCTGATCATAGCCACCGAGATCCTGTCGTCGATGTTGTACAACGGCACCAAGCG
CGAGATGCTTGTGCCGAATGTGCTGTTCCGCATGGGCGCCGCCGCCATGATCATGACCAACTCACCGGAACGCGCGCGGT
TCCGGCTCGGTCCGATCGTGCGCACGCTGACCGCCGGGCGGGACAGCGACTACCGGTGCGCATTCCAGGAGGAGGACGAC
AAGGGGATCACGGGCATCAACCTCTCAAAGGAACTTCCCGTGGTTGCTGCGAACGCGCTCAAGAGTCACATCGTGGCCTT
CTGTCCCAGGGCCCTGCCTGCGTTGGAGCTTCTCCGGGTCGCCTTCTCCCTCGTCAAGCAATACGTGTTCCCGCAGCCGA
GAGCAACTGGGCGAGCGGAGAAGGGCGCGCGGCCGGCCTTCAACAAGGTGTTCCAGCACTTCTGCATCCACCCGGGCGGG
CGCAGGGTGCTCCACGAGATGCAGCGTGGCCTCGGCCTCTCTGACCGTGACATGGAGGCGTCGCACATGACGCTGCACCG
GTTCGGGAACATGGCCAGCAGCTCGCTGCTGTACGAGCTGGCCTACATCGAGGCCAAGGGCCGGATGAGCAAGGGTGACC
GGGTGTGTATGATCTCCTTCAGCCCCGGCATAGACTGCAGCAGCGTCGTATGGGAGTGCATCAACCCGGCGGCGGCAGAT
CCCAACGGACCCTGGGCCGCCTGCATCCACCGCTACCCTGTGCA------------------------------------
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>SNPs
-------S-S--------------S-S-S-----S---S---S----S---S-------------S--------------
-----SS-------------S---SS---------------------S--S----SS--------S-----------S-S
----------SSSSS------S-------------S-----------S--------S--------S-SS-----------
S-------------------------S---------------------SSSSSSSS-------------S----------
------------------------------S--------------S--S---------S-S-SSSSSSSSSSSSSSSS--
-SSSSS-SSS-SSS-SSSSSS-S-SSSSS-SSSS--S--SSSSSS-SSSSS-SSSSSS-S--SSSSS--S-SS--SS-SS
S-------------------------------------------------------------------------------
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------------------------------------S------S--S----S----------------------S----S
---S--------------------------SS---------S--------S-S-------S-S-----SSS----S----
-----S------------S----SS-----S-----------S--S--SSS-----------------S---S-------
---------S--------------------------SSSS-SSSSSS-------------------S-------------
-------S---------------------------------------S-S----------S--S----------------
------S-------------------------------------S----S------------------------S-----
-------S-------------------------------------------S---------------SSSSSSSSS-SS-
-SSS-SSS-SSSS--S----------------------------------------------------------------
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--------------S----------------S-------------------S--------------------------S-
-------------------S---------S-S--S------------------S--------------------------
-------------------S-------------------S-S--S-----S--------S---S-------------S--
----S-------------------------S-----------S-----------S----------S--------------
--------------------------------------------------------------S----------------S
--S--S------------------------------------------------------S-----S-------------
---------------S--------S-------------------------------------------------------
----------------------------------S-SS-----------------S------------------------
--------------------------S--------------S-----------------------------S--SS----
-------S-------------S-S------------------------------------S-------------SS---S
-S--SSS------S------------------------------------------------------------------
--------------S---S------S------------------------------------------------------
-------------------------S------------------------------------------S-S---------
-------S------------------------------------------------------------------------
-----------------------S--------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS
>forward_423
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---AAGCTTGCCGAACTTCCACT---------------------------------------------------------
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>reverse_4208
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-----------------------------------------------CAAGACGACCTAAGGCCAGG-------------
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>forward_3220
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GAAGCCGAGCTGGTCATCTT------------------------------------------------------------
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>reverse_4749
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----------------------------CAACCGTCGGATGCGAAATC--------------------------------
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