>input_sequence_59033
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----------------------------------------------------------------------------ATGG
GGAACTCCAGCAGCAGCAGCGCCGGCGGCAGCAGGCCCCACCGGCCGACGACCTCGTCGGAGTCGGGGCTGCCGCACGCC
GCCGCGGCGGAGGAGCTCAGCTCGTACGAGGCGGCGTGCCGGCACGACCCGGAGGTGCGCACCTTCGACTCCACGCTGCA
GCGCCGCACCAGCCGCGCCATCTCCACGCTGGCGGTGGGGGTCGAGGTGCGCTCCATGTCGCTCGACTCCCTCCGCGAGG
TCACCGGCTGCCTCCTGGACATGAACCAGGAGGTGGTCAAGGTCATCCTCGACTGCAAGAAGGACATCTGGAAGAGCCCC
GAGCTGTTCGACCTCGTGGAGGACTACTTCGAGAGCAGCCTCCACACCCTCGACTTCTGCACCGCGCTCGACAAGTGCCT
CAAGCGCGCCCGCGACTCGCAGCTCCTCCTCCACGTCGCGCTCCAGCGCTTCGACGACGAGGACGACAACGCCGCCGCCG
CCG---------CCGCGCCCGCCGCCCGGTACGCGCGCACGCTGCACGAGCTGCGCCAGTTCAAGGCGGCCGGGGACCCC
TTCACCGACGAGTTCTTCGAGGCCTTCCAGGCCGTGTACCGGCAGCAGCTGGCCATGCTGGAGAAGCTGCAGCAGCGCAA
GCACCGGCTGGACAAGAAGATCAAGACCATCAAGGCGTGGCGCCGGGTGTCGAGCGTCATATTCGCGAGCACCTTCGCGG
CGGTGCTCATCTGCTCGGTGGTCGCCGCGGCCATCGCCGCGCCGCCCGTCGCAGCGGCATTGGCCGCGGCGGCTGCGATT
CCGATAGGGTCCATGGGGAAGTGGATCGACTCGCTGCTCAAAGGGTACCAGGACGCCGTCCGTGGGCAGAAGGAGGTGGT
GAGCGCAATGCAGGTCGGCACGTTCATCGCCATCAAGGATCTGGACAACATCAGGGTGCTCATCAACCGGGTGGAGATGG
AGATCGGCTCAATGATCGACTGCGTGGATTTCGCGGAGCGGGACGAGGAGGCGGTCAAGTTCGGGGTGGAGGAGATCAAG
AAGAAGCTGGAGGCCTTCATGAAGAGCGTCGAGGACCTCGGGGAGCAGGCTGACCGGTGTAGCCGAGACATCCGCCGAGC
AAGGACCGTCGTGCTGCAAAGGATCATCCGGCATCCCAACTGA-------------------------------------
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>chr4A_1_TraesCS4A01G040000
AGTAAAGGCCTGTTTGGAATTTCACCAGGTTCACGAAATTGCAAGAGCCGTGGAGTCAGAAAATAGCCGCTCCGCAGTTT
TCAACTGCAACTCTGGAAGTGGAGTTGTGGAGTGGAGATTCTCCGAACAGGGCTTAAGGATGCTAAAATGGAATTAGAAT
TAGGTATATTCGAGAGAAAAAAAATGGAATTAATCACACGAGATAAT---GCAGCCAGAAAGTGGGCAATGCTGTGAAGG
AAAAGAAATCAGTTTGCGAATTACTCGATGTGGCACTTTGGCCTTTTCCCTTTTTGCTGCTGCGGTGTGGTGGTGCGTTG
CTTCGTTGCTTGCTTCCCCGAGACAGAAACTAATCAGGGCAGCAGCCAGCAGCAACACGCACGCGCAATTGCTCGTGTGT
TTACTCCACTCCT-----------ACTGCTGCTGCGATTGCATCATCAGATCAGATTCAGACCACATCCGCCGCACACGC
ACACGCGCCTAGAGATGGAGTGAGAAGCATCAGGTTGCTTCCGCCGCCGGCCATTGCCGCCTGCCCATCCATCTCCACCG
CCACCTCCACCTCCGTCCCCCGTCCGTTCGTCATGCGTACAAGCCATCCCCACACCTGACAACAACCACACTCCACAAAA
CCACCCCCGACCCCCCTCCCTCCCTGCATTCATTCCCATTCATCTTCGATCTCCCCCGA---------------------
-GACCTCGCTTTCTTGACCGCTCGCTCCGACGCGCCGCGCCGCCCCGCCGATAAAGCTCGCAGCTTCTCCCTCTCTCTCT
CTCTCGTCCCCGCTCGAATCCGCTTCTCCGGCTCCCGGATTTTCTTGCAAGGATTCTGTGGGCTCCTGCCAATGCTCGCC
GGTCTGATCCGTCCTGCTTGCTGAGGCGCTCCTCGATTCGGTCCTGGGACGCGTCGTGCTCCTGATCTGCTGCTGATTCC
TCGAAATCCGGTGAAAGTCCGTCCGTCCATCCTGGGTCTGATTTGCGGGTGCCACCGGCCGTCTTCGCCTCCGGCAATGG
GGAACTCCAGCAGCAGCAGCGCCGGCGGCAGCAGGCCCCACCGGCCGACGACCTCGTCGGAGTCGGGGCTGCCGCACGCC
GCCGCGGCGGAGGAGCTCAGCTCGTACGAGGCGGCGTGCCGGCACGACCCGGAGGTGCGCACCTTCGACTCCACGCTGCA
GCGCCGCACCAGCCGCGCCATCTCCACGCTGGCGGTGGGGGTCGAGGTGCGCTCCATGTCGCTCGACTCCCTCCGCGAGG
TCACCGGCTGCCTCCTGGACATGAACCAGGAGGTGGTCAAGGTCATCCTCGACTGCAAGAAGGACATCTGGAAGAGCCCC
GAGCTGTTCGACCTCGTGGAGGACTACTTCGAGAGCAGCCTCCACACCCTCGACTTCTGCACCGCGCTCGACAAGTGCCT
CAAGCGCGCCCGCGACTCGCAGCTCCTCCTCCACGTCGCGCTCCAGCGCTTCGACGACGAGGACGACAACGCCGCCGCCG
CCG---------CCGCGCCCGCCGCCCGGTACGCGCGCACGCTGCACGAGCTGCGCCAGTTCAAGGCGGCCGGGGACCCC
TTCACCGACGAGTTCTTCGAGGCCTTCCAGGCCGTGTACCGGCAGCAGCTGGCCATGCTGGAGAAGCTGCAGCAGCGCAA
GCACCGGCTGGACAAGAAGATCAAGACCATCAAGGCGTGGCGCCGGGTGTCGAGCGTCATATTCGCGAGCACCTTCGCGG
CGGTGCTCATCTGCTCGGTGGTCGCCGCGGCCATCGCCGCGCCGCCCGTCGCAGCGGCATTGGCCGCGGCGGCTGCGATT
CCGATAGGGTCCATGGGGAAGTGGATCGACTCGCTGCTCAAAGGGTACCAGGACGCCGTCCGTGGGCAGAAGGAGGTGGT
GAGCGCAATGCAGGTCGGCACGTTCATCGCCATCAAGGATCTGGACAACATCAGGGTGCTCATCAACCGGGTGGAGATGG
AGATCGGCTCAATGATCGACTGCGTGGATTTCGCGGAGCGGGACGAGGAGGCGGTCAAGTTCGGGGTGGAGGAGATCAAG
AAGAAGCTGGAGGCCTTCATGAAGAGCGTCGAGGACCTCGGGGAGCAGGCTGACCGGTGTAGCCGAGACATCCGCCGAGC
AAGGACCGTCGTGCTGCAAAGGATCATCCGGCATCCCAACTGAGAGCCAAGGATCGATGATGAAGAGTGTGTAAGGTATG
GATATGATAAGTTATAGCCATGTGCTCTTTGATCATGTTGTGGTTGCAATGTACATAAGAGATGCTCCTTGTAGACACTA
TGAACGACTCAGTTTGATATAAATTATTGTTTGGCTCATCGATTTGTTCTGTCTCATGGCCTCTTTTTGCACAATACCGT
ACAAGATTTTGCGGTGAATGAAATTTCTCCGTATGTCAAGTTGCGGTGAATTCTAGATGTGTGATATAATACATAACTCT
TGTGCTCCGTATTTGTAAGTAGTAATTCCAGTGGGTGAACCGTGTCTATATGATCCAGACCAAGTCAGGTCATAC-----
----------------TGATTTATAAATTACCACTCTGTTATTGAGCTTAACCGCCCACATTTCAGAGGTCCAAGTTTTC
TGCAGTCTTTTCTAAAAGAAAG-GGAAAAGGTCATTGTCTAAGCTTCCATGGTTGCTAGTCTTCTAGACGTGTAGGTGTT
GTCTCTTGTTGCTTCCCCAAGTCACATATACTGATATACTTCTAAGCAAAGCAAATTTTAAATTAGGAAGACAGAATGTT
TGAGATATCTGATATCTCAGCGGTGTTCCCGTGTCCGGCAGAACTGTCGGTACAATTCTAGAAATTCCTTTAGAAATACT
TCTTACCAGATAATCATTGTTGTGTGATCACCTCCACATGTACTTTTTGGATA--TTTGATACACTATTGCAGTTTCTGC
GCTTATATAACAT--TTTGGAGCAACTGTACCCTCCTAAGTATGTCAAATATCTTTC-TTTGATCTGTATCATGTTTTCT
TTAGCAGAATGATCTGATCAGTAAATTTTAGTTAAATT-------------------------------TTTGTGATGTT
CGCACAAGGAATATCTGCTATCTCCTCTCAAATCTGGACTTCACTATCTGGATTCTATGTTCTTGCATTTGAATGTGA--
-ACTGGTATTTCTCAATGTATCACATTTTGTTTCCGAATATCAAAAAACTACTACCTCTTTTCC
>chr4D_178
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-----------------AAAAAAATGGAATTAATCACACCAGATAAT---GCAGCCAGAAAGCGGGCAATGCTGTGAAGG
AAAAGAAATCAGTTTGCAAATTACTCGATGTGGCACTTTGGCCTTTTCCCTTTTTGCTGCTGC-----GGTGGTGCGTTG
CTTCATTGCTTGCTTCCCCGAGACAAAAACTAATCAGGGCAGCAACACGCA--------CACGCGCAATTGCTCGTGTGT
TTACTCCACTACTGCAATCATCACA---CTGCTGCAATTGCATCATCAGATCAGATTCAGACCACATCCGCCGCACACGC
ACACGCGCCTAGAGATGGAGTGAGAAGCATCAGGTTGCTTCCGCCGGCGGCCATTGCTGCCTGCCCATCCATCTCCACCG
CCACCTCCACCTCCA-CCCCCGTCCGTTCGTCATGCGTACAAGCCATCCCCACACCTGACAACAACCACACTCCACAAAA
CCACCCCCAATCC----CCCTCCCTGCATTCATTCTCATTCATCTTCGATCTCCTCGCTT----GCTAGATTGCTCCCCC
GAACCTCGCTTTCTTGACCGCTCGCTCCGACGCAA-----CGCGCCGCCGGCAAAGCTCGCAGCTTCTCCCTCTGCC---
-------CCCTGCTCGAATCCGCTTCCCCGGCTCCCGGATTTTCTTGCGAGGATTCTGTGGGCTCCTGCCAATGCTCGCC
GGTCTGATCCGTCCTGCTTGCTGAGGCGCTTCTCGATTTGGTCCTAGGACGCGTCGTGCACCTGATCTGCTGCTGATTTC
TCGAAATCCGGTCAAAGTCCGTCCGTCCATCCTGGGTCTGATTTGCGGGTGCCACCGGCCGTCTTCGCCTCCCGCAATGG
GGAACACCAGCAGCAGCAGCGCCGGCGGCAGCAGGCCCCACCGGCCGACGACCTCGTCGGAGTCGGGGCTGCCGCACGCC
GCCGCGGCGGAGGAGCTGAGCTCGTACGAGGCGGCGTGCCGGCACGACCCGGAGGTGCGCACCTTCGACTCCACGCTGCA
GCGCCGGACCAGCCGCGCCATCTCCACGCTGGCGGTGGGGGTCGAGGTGCGCTCGATGTCGCTCGACTCCCTCCGCGAGG
TCACCGGCTGCCTCCTGGACATGAACCAGGAGGTGGTCAAGGTCATCCTCGACTGCAAGAAGGACATCTGGAAGAGCCCC
GAGCTGTTCGACCTCGTGGAGGACTACTTCGAGAGCAGCCTCCACACCCTCGACTTCTGCACCGCGCTCGACAAGTGCCT
CAAGCGCGCCCGCGACTCCCAGCTCCTCCTCCACGTCGCGCTCCAGCGCTTCGACGATGAGGACGACAACGA---CGCCG
ACG---------CCGCGCCCGCCGCCCGGTACGCGCGCACGCTGCACGAGCTGCGCCAGTTCAAGGCGGCCGGGGACCCC
TTCTCCGACGAGTTCTTCGAGGCCTTCCAGGCCGTGTACCGGCAGCAGCTGGCCATGCTGGAGAAGCTGCAGCAGCGCAA
GCACCGGCTGGACAAGAAGATCAAGACCATCAAAGCGTGGCGCCGGGTGTCCAGCGTCATCTTCGCGAGCACCTTCGCGG
CGGTGCTCATCTGCTCGGTGGTCGCCGCGGCCATCGCCGCGCCGCCCGTCGCAGCGGCATTGGCCGCGGCGGCCGCGATT
CCGATAGGGTCCATGGGGAAGTGGATCGACTCGCTGCTCAAAGGGTACCAGGACGCCGTCCGTGGGCAGAAGGAGGTGGT
GAGCGCAATGCAGGTCGGCACGTTCATCGCCATCAAGGATCTGGACAACATCAGGGTGCTCATCAACCGGGTGGAGATGG
AGATCAGCTCAATGATCGACTGCGTGGACTTCGCGGAGCGGGACGAGGAGGCGGTCAAGTTCGGGGTGGAGGAGATCAAG
AAGAAGCTGGAGGCCTTCATGAAGAGTGTCGAGGACCTCGGGGAGCAGGCAGACCGGTGTAGCCGAGACATCCGCCGAGC
CAGGACCGTCGTGCTACAAAGGATCATCCGGCATCCCAACTGAGAGGCAAGGAT-GATGATGAAGAA--TGTAAGGTATG
GATATGATAAGTTATAGCCATGTACTCTTTGATCATGTTGTGGTTGCAATGTACATAAGAGATGCTCCTTGTAGACACTA
TGAACGGGTCAGTTTGATATAAATTGTTGTTTGGCTCATTGATTTGTGCTGTTTCATGACCCCTTTTGTCACAATACTGT
ACAAGA--TTGCGGTGAATGAAATTTCTCCGTATGTTAAGTTGCGGTGAATTCTACATGTGTGATATAATACACAACTCT
TGT-------ATTTGTAAGTAGTAATTCCAGTGGGTGAGCCATGACTATATGATC-------------------C-----
----------------TGATTTATAAATTACCACTCTGTTATTGAGCTTAACCGCCCACATTTCAGAGGTCCAAGTTTTC
TGAAGTATTTTCTAAAAAAAAGAGGAAAAGGTCATTGTCTAAGCTTTCAGGGTTGCTAGTCTTCTAGACGTGCAGGTGTT
GTCTCTTGTTGCTTCCCCAAGTCACATATACTGATATACTTCTAAGCAAAGGAAATTTTAAAATAGGAAGACAGAATGTA
CGAGATATCT-ATATCTCAGCGGTGTCCTCGTGTCCGGCAGAACTGTCGGT-----------------------------
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>chr4B_182
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---------------------AAATGCAATTAATCACACCAGATAATAATGCAGCTAGAAAGTGGGCAATGCTGCG----
-AAAGAAATCAGTTTGCAAATTACTCGATGTGGCACTTTGGCCTTTTCCCTTTCTGCTGCTGT-----GGTGATGGGCTG
CTT--TTGCTTGCTTCCCCGAGACAAAAACTAATCAAGGCAGCAA--------------CACGCGCAATAGCTCGTGTGT
TTACTCCAA-----CAATCATCACACTGCTGCTGCGATTGCATCATCAGATG------AGACCACATCCGCCGCACACGC
G-------CTAGAGATGGAGTGAGAAGCATCAGGTTGCTTCCGCCGGCGGCCATTGCTGCCTGCCCATCCATCTCCACCG
CCACCTCCACCTCCA-CCCCCGTCCGTTCGTCATGCGTACAAGCCATCCCCACACCTGACAACAACCACACTCCACAAAA
CCACCCCCAATCC----CCCTCCCTGCATTCATCCTCATTCATCTTCGATCTCCTTGCTTGCTAGCTAGCTTGCTCCCCC
GGACCTCGCTTTCTTGACCGCTCGCTCCGACGCAA-----CGCGCCGCCGGTAAAGCTCGCAGCTTCTCCCTCTGGC---
-------CCCCGCTCGAATCCGCTTCCCCGGCCCCCGGGTTTTCTTGCGAGGGTTCTGTGGGCTCCTGCCAATGCTCGCC
GGTCTGATCCGTCCTGCTTGCTGAGGCGCTCCTCGATTCGGTCCTGGGACGCGTCGTGCTCCTGATCTGCTGCTGATTCC
TCGAAATCCGGTGGAAGTCCGTCCGTCCATCCTGGGTCTGATTTGCGGGTGCCACCGGCCATCTTCGCCTCCGGCAATGG
GAAACACCAGCAGCAGCAGCGCCGGCGGCAGCAGGCCCCACCGGCCGACGACCTCGTCGGACTCGGGGCTGCCGCACGCC
GCGGCGGCGGAGGAGCTCAGCTCGTACGAGGCGGCGTGCCGGCACGACCCGGAGGTGCGCACCTTCGACTCCACGCTGCA
GCGCCGCACCAGCCGCGCCATCTCCACGCTCGCGGTGGGGGTCGAGGTGCGCTCCATGTCGCTCGACTCCCTCCGCGGGG
TCACCGGCTGCCTCCTGGACATGAACCAGGAGGTGGTCAAGGTCATCCTCGACTGCAAGAAGGACATCTGGAAGAGCCCC
GAGCTGTTCGACCTCGTCGAGGACTACTTCGAGAGCAGCCTCCACACCCTCGACTTCTGCACCGCGCTCGACAAGTGCCT
CAAGCGCGCCCGCGACTCCCAGCTCCTCCTCCACGTCGCCCTCCAGCGCTTCGACGACGAGGACGACAACGA---CGGCG
ACGCCGCCGCCGCCGCGCCCGCCGCCCGGTACGCGCGCACGCTGCACGAGCTGCGCCAGTTCAAGGCGGCCGGGGACCCC
TTCACGGACGAGTTCTTCGAGGCCTTCCAGGCCGTGTACCGGCAGCAGCTGGCCATGCTGGAGAAACTGCAGCAGCGCAA
GCACCGGCTGGACAAGAAAATCAAGACCATCAAAGCGTGGCGCCGGGTGTCGAGCGTCATCTTCGCGAGCACCTTCGCGG
CGGTGCTCATCTGCTCGGTGGTCGCCGCGGCCATAGCCGCGCCGCCTGTCGCAGCGGCATTGGCCGCGGCGGCCGCGATT
CCGATAGGGTCCATGGGGAAGTGGATCGACTCGCTGCTCAAAGGGTACCAGGACGCTGTCCGTGGGCAGAAGGAGGTGGT
GAGCGCAATGCAGGTCGGGACGTTCATCGCCATCAAGGATTTGGACAACATCAGGGTGCTCATCAACCGGGTGGAGATGG
AGATCAGCTCAATGGTCGACTGTGTGGACTTCGCGGAGCGGGACGAGGAGGCGGTCAGGTTCGGGGTGGAGGAGATCAAG
AAGAAGCTGGAGGCCTTCATGAAGAGCGTCGAGGACCTCGGGGAGCAGGCAGACCGGTGTAGCCGAGACATCCGCCGAGC
AAGGACCGTCGTGCTGCAAAGGATCATCCGGCATCCCAACTGAGAGGCCAG----GATGATGAAGAA--TGTAAGGTATG
GA-ATGATAAGTTATAGCCGTGTACTCTTTGATCATGTTGTGGTTGCAATGTACATAAGAGATGCTCCTTGTAGACACTA
TGAACGGGTCAGTTTGATATAAATTATTGTTTGGCTCATTGATTTCTTCTGTTTCATGACCCCATTTGTCACAATACTGT
ACAAGA--TTGCGGTGAATGAAATTTCTCCGTATGTTAAGTTGTGGTGAATTCTACATGTGTGATATAATACATAATTCT
TGT-------ATTTGTAAGTAGTAATTCCAGTGGGTGAGCCATGACTATATGATC-------------------CAGACC
AAGGCAGGCCATATACTGATTTATAAATTACCACTCTGTTATTGAGCTTAACCGCCCACATTTGGGAGGTCCAAGTTTTC
TCAAGTCTTTTCTAAAAGAAAG-GGAAAAGGTCATTGTCTAAGCTTTCAGGGTTGCTAGTCTTCTAGACGTGTAGGTGTT
GTCTCTTGTTGCTTCCCCAAGTCACATATACTGATATACTTCTAAGCAAAGGAAATTT-AAATTAGGAAGACAGAATGTA
TGAGATATCTGATATCTCAGCGGTGTTCCCGTGTCCGGCAGAACTGTCGGTGCAATTCTAGAAATTCCTTTAGAAATACT
TCTTACCAGATAATCATTGTTGCGTGATCACCGCGGCATGTACTTTTTGGATATTTTTGGTACACTAATGCAGTTTCTGC
ACTGATATAATGTACTTTGGAGCAATTGTACCCTCCTAAGTATGTCAAATATATTATTTTTGATCTGCATCATGTTT-CT
TTACCAGAATGATCTTATCAGTAAATTTTAGTTAAATTCTTGTGATGTTCTTTTTTTTTTTTTTTGCTTTTTGTGATGTT
CGCACAAGGAATATCTGCTATTTCCTCTCGAATCTTGACTTCACTATCTGGATTCTATGTTCTTGCATTTGTATGTGAAC
TACTAGTATTTATCAATGTATCACATTTTGTTTCCAAATATC--AAAACTACTGCCTCTTTTCC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS----------------------S----------------------------------------
-----------------S---------------------------------------------SSSSS------------
----S--------------------S------------------S-SS---SSSSSSSS---------------------
----------S---------------------------------------------------------------------
----------------------------------------------S----------S----------------------
--------------SS----------------------------------------------------------------
--------S-S--SSSS------------------S------------------S-SSS---------------------
---------------------------------SSSSSSS---S------S-----------------------SS-SSS
SSSSSSS-------------------S---------------------S-------------------------------
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-----S--------------------------------------------------------------------------
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------------------S----------------------------------------------------SSSS-----
S-------------------------------------------------------------------------------
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---------------------------------S--------------------------S-------------------
-------------------------------------------------------------------------S------
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-----S----------------------S---------------------------------------------------
--------------------------------------------------S-----------------------------
----------------------------------------------S-------S-----------SSS-----------
-----------------------S--------------------------------------------------------
------SS-------------------------------S------------S-----S--S-----SS--------S--
------SS----------------------------S------------------S------------------------
---SSSSSSS----------------------------S--S--S----------SSSSSSSSSSSSSSSSSSS------
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--S-------------------------------------------S--S------------------------------
---------------------------------------------------S---------------------------S
---------------------------------------------------S----------------------------
----------------------S---------S-SS-----------------------S-------S------------
S--S------SS-------------S--------------------------S--SS----------S---------S--
---S-----------S----------------------------------------------------------------
---------------------S-------S-----S-----------------------------------S--------
----S------S-----------------------S------SS---------S----------
>forward_133
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---------------------------------GGAGATTCTCCGAACAGGGC---------------------------
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>reverse_1834
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-------------------------------------------------------------------------TGCGATT
CCGATAGGGTCCA-------------------------------------------------------------------
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>forward_699
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---------------------------------------TCATCTTCGATCTCCCCCGA---------------------
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>reverse_2006
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-----GGCTCAATGATCGACTGCGT-------------------------------------------------------
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>forward_799
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-----------------------------------------------------------GCAGCTTCTCCCTCTCTCTC-
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>reverse_2373
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----------------------------------------------------CTCATGGCCTCTTTTTGCACA-------
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