>input_sequence_59019
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-------ATGGCGTGCAGCAGCAC-CGGCGCCCTCCAGTCATTGCCACTGCTCGTCTTCGAGCACCAGCCCACACGGAAC
GAGTCGACGACAGCGATCGGAGTCGGAGGCGATGATCAAGAAGTTATCCCCGAGATGCTCATGTTCAGCATATCGGAAGA
GAGAACATGCATGGAGGCGACACCGGCCATGCTATCCCCGCAG--GACAACCAGATCTGCTTCGCCACCCCGCAGGGCTG
GATCTTCATCATCCACGGCGCCTCCCCGTGGGAGACCTGGTTGTGGCATCCGATCACCGGAGAGACCATACCCCTCCCGC
CCATAAAAGACGACCACTATGTCCCCACCAGCTGCACCTGCCTCCTGACCCATAGCTCCGTCGCGCACCCCGACTGCGCC
GTCGTCCTGTTCGACGTCGAGGACCCCGAAATGTGGTTCTGCCGAGTCAACGGCGGAAGCAGGAGGGCATGGGGGCAGCA
CACATACGATGTTGGTGAGTACACTCTCCCAGACCCAGAGCCAGAGGACGTCAGTGACGGCGACGGCG------ACTCCA
CTTCTACTCCCCCCACCAAGCGAGTCATCCCCACCCTCGTCGCCGCGCAGGGAGGGAAGCTGCACTTCATCTTCTCGGAA
TCAAACCAATACAAGATGGGCATCGTTCAGCTCGACTTCGGCACCCCTCCTTCTCCCACTGCTGAGCTTCATACGCTCGA
GGACGTGGACGCCGCCATCACTCTACCGGAAGGCATGTGCTCCGGCGTGTCTTGGCTGCTGGACTCCCTCGGGGAGCTGT
TCCGGGTCTGCGTTTGCTTTCGGGAATTCAACCCCGACGACATCGGCGCCGTCCTTGTCTTTAAGATGGATTTCGACCAT
GGGCGCTGCTGGCGCATGGTGCATGACATTGGAGACAGGGTCTTCATGTTGGCTCGCGGAGGCAATGCGGTTTCTTGCCC
AGCGGGCGCCTGCAACCTGCAGGGAAACCGCATCTACTTCATGAAGAACTTCGTCGAGGATGATGGGGATCTGTGCATCT
ACGACTTGGGGGAACAACTCATTGAGATTCTTGTGGTTCATGAACGTGACTTGACTCTTGCACGCGTCAAACCTTATTGG
A--------------GCCTAGTGCATGATATGCATGCACGCGGCCTCAAATCCGATGCTTA-TTTCTAG-----------
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>chr3A_1_TraesCS3A01G467200
ACGAATACACAAGGTTTAAGTCCACAGACA--------------------------------------------------
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-----------------------AGACGATGGCGGCTCGACGAAGATGGAATAAGGTTCTTCCCGCCTAGCCCCCATCAC
GGTGGTGCATCTAGCATCGTTGAAGGGAGTGTGGAGGTGCGTCTCCGGCGAATCTCGCGGCATTCGGTCTATGATTGTCT
TTGGTGGATCTACTCGGATCCAATCTTTGTTTGTATTTGTGTCATGTGTCTTCGGGTTAGATCCTTCCGATATAAATTTC
TCTTCATCGGCGGCGGTTGCTATTCTGGTGCGTCGGTCCTATGGGGCTTTAGTA----------------GTCTGCTACA
ATAAGTTGTGCCCGGCTCCGGCGAGGGAGGGGCGATGACGGCGACGCACCTTCGGCTCGCTTCAGTGCTTGTAGTCGTTG
CTAAATGGTCAATG-----------AATTTTAATTATTTCTGA------TGATTGTTGCACTGCCATGGTTAAAGATGAA
TAGATCAGAAGTTTTCTG--AAAAATCG-----AAAAATAAAAAATAAAACAGAAAATAAAAAGAAAAACATCAAATAAA
ACCACGCTACTAGTGTGCAGGCCATGAGGAAAGTGTCGCCGTATATGGCATTTTAGTGTATATTCTGCATATTTTTTTGA
AAACAAGGAATACTCCTT-------TTTTTTTG-CGCACAGAAAACTCTATTCGCATACTGACTAGGACAATCAGAGTCT
AATTTAGATGCTTTATAAA-AAAAAGAGTCCAATTTAGATTCGGTAAAACAATACATGGTCGACTCGGACTCTAGTCAAC
TTAGCTTCTCCTATAAAGTC---ATATTCGTATCGTTCAAAAAAAAAGAGTCATATTCGTATCTGCCGTCCGTAGATCAA
TTATTAACCACGGAGCGAAAATA--AGCTGAGAGCAGAGGCAGAGTCATTGGGGATTTCTCGGCAAAAAAAAAGGAGTCA
TTGGGGATTTCTTCGCGTCCACCGACGACGACGGCGCGCACGTACCGGCCGGAGATTGAATTCAGTTTCAACGACGATCG
ATCAGGAATGGCGTGCAGCAGCAC-CGGCGCCCTCCAGTCATTGCCACTGCTCGTCTTCGAGCACCAGCCCACACGGAAC
GAGTCGACGACAGCGATCGGAGTCGGAGGCGATGATCAAGAAGTTATCCCCGAGATGCTCATGTTCAGCATATCGGAAGA
GAGAACATGCATGGAGGCGACACCGGCCATGCTATCCCCGCAG--GACAACCAGATCTGCTTCGCCACCCCGCAGGGCTG
GATCTTCATCATCCACGGCGCCTCCCCGTGGGAGACCTGGTTGTGGCATCCGATCACCGGAGAGACCATACCCCTCCCGC
CCATAAAAGACGACCACTATGTCCCCACCAGCTGCACCTGCCTCCTGACCCATAGCTCCGTCGCGCACCCCGACTGCGCC
GTCGTCCTGTTCGACGTCGAGGACCCCGAAATGTGGTTCTGCCGAGTCAACGGCGGAAGCAGGAGGGCATGGGGGCAGCA
CACATACGATGTTGGTGAGTACACTCTCCCAGACCCAGAGCCAGAGGACGTCAGTGACGGCGACGGCG------ACTCCA
CTTCTACTCCCCCCACCAAGCGAGTCATCCCCACCCTCGTCGCCGCGCAGGGAGGGAAGCTGCACTTCATCTTCTCGGAA
TCAAACCAATACAAGATGGGCATCGTTCAGCTCGACTTCGGCACCCCTCCTTCTCCCACTGCTGAGCTTCATACGCTCGA
GGACGTGGACGCCGCCATCACTCTACCGGAAGGCATGTGCTCCGGCGTGTCTTGGCTGCTGGACTCCCTCGGGGAGCTGT
TCCGGGTCTGCGTTTGCTTTCGGGAATTCAACCCCGACGACATCGGCGCCGTCCTTGTCTTTAAGATGGATTTCGACCAT
GGGCGCTGCTGGCGCATGGTGCATGACATTGGAGACAGGGTCTTCATGTTGGCTCGCGGAGGCAATGCGGTTTCTTGCCC
AGCGGGCGCCTGCAACCTGCAGGGAAACCGCATCTACTTCATGAAGAACTTCGTCGAGGATGATGGGGATCTGTGCATCT
ACGACTTGGGGGAACAACTCATTGAGATTCTTGTGGTTCATGAACGTGACTTGACTCTTGCACGCGTCAAACCTTATTGG
A--------------GCCTAGTGCATGATATGCATGCACGCGGCCTCAAATCCGATGCTTA-TTTCTAGTGGGTGTGATT
TTTTGTGTGCTTGTAATTGTCGCACATGCCACATGAATGTAATGAGTTGCTACTAGTAG---GGAAGTTAAAGTTTTAAT
GGTAGCCTTTGTTCTAGGGCACTTGCGATTTGTTCCGCCAGTTTTTTTTGTTTTAAAGTTGATCCTGTTCTTTGTATTAA
GAGCATCTCCAATAGCTG--CCTATTTTAGGGCAAGATTTTGGATTTGGAGTAAAATTTAGGGCATAAAAATGCATTTTT
TTGATACGAGAGAGTACCGTCTCCAACAACTGCCCTATAATAGGGCACCCAAAACAGCGAAACCATATATTTCTCTCAAA
ATGGAACATTATAACTACGTCAACCATATTTCATACTTCAGAACTACTTCGACCACATTCAAAGTTTATACATGCAACAT
AGTTCA-CTACAACATGTAAACTTAAACTACGCCATGCAAACTACAAACACACTATAGGTTATCCCAATCAATGTCATCA
TCGTCGGAATCCTCCTCCTTCTTG-CCCCAGATGATGGCCCTGCCTCGGCGTCGTTCTTGCACTTGGACTTCTCGAGATC
CCTCTTCCAGT---------------------------------------------------------------------
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---------------ACAACTCCATCTCGTTCTGCGTGTACTTCGGGTGCTTCCTCGCAAACCTCGGCATTGCCTCCTCG
TCTTCTCTCTCGACTGGTGTCCCACTCATCGATAACAATGAGGGTCATGGGATCGAGCTAGAATCAATGGTCACCGAGAC
TCGACGTGCTCCGCCACCGCCCGAGACTTGATCTCCAGAAAGTTGAGCCTCTCGCACGGCAGGTCGAGCCTACATGGCGC
AACATTGTAGGCACGGGCGGCAATGTTGGCCGTCGGGTAGGTGCCGAGCCAATACCTCTGACCGTCGTGCTAGAACACGA
CGCCGAACCGGTCAAACGGTCGCGGTCGCACCCCCTAGAAGTCGGCGTTGCCTTTGCCCTTCGGCGGCATGACGAGGATG
CAGCGATGCCAGGGAAGGAGGCGATGACTCTAGAGAAGGA
>chr3D_26
GGATTTCTCGCGTCCACCGACAACGACAGCGCGCATGTGTACTGGCCGGAGATTGAACTCAATTTCAAGCACGATCGACC
AGCAATGGCGTGCAGCATCACCAGCGCCCTCCGGTCCTTGCCACTGTTCATCTTCGAACACCGGCCCTCCCGAAATGAGT
CGACGACGGTGATCAGAGTCGGAAGCGATGATCAAGAACATAGCACCAAGATGCTCATGTTCAGCATATCAGAAGAGAGA
ACATGCACGGAGGTGACACCCGCCATGCTATTCCCCGAGGACAACTAGATCTGCTTTGCCACCCAATAGGGCTGGATCTT
CATCATCCATGCATGGCGCCTTCCCGTGGGAGACTTGGCTTTGGCATCCGATCACCGGAGAGACCATACCCCTCCCGCCC
ATACAAAACGACCACTACGTCCCAACCAGCTGCACTTGCCTCCTGACCCACAGCTCCGCCGCGCACCCTAACCGCGTCGT
CGTCCTATTCAATAAGGAAGACGAGACGGCGGCGGCTCGCTGAAGATGGAATAAGGTTCTTCCCGCCTAGCCCCCATGAC
GGTGATGCGTCTAGCATCTTCAGAGGGGATGCGGAGGTGTGTCTCTGGCAGATCTCGCGGGATTCGGCCGGTGGTTGTCT
TTGGTGGATCTACTCGGATCCGATCTTTGTTTGTCTTTGT-TCATGTGTCTTCGGATTGGATCTTTCCGATCTAAACTTC
TCTTCATCGGCAACGGTTGCTATTCTGGTGTGTTGGTCCTATGGGGCCTTAGCACAACGATTTCTCCACTGTCTACTACA
ATAA-TTGTGCCCGGCTCCGGCGAGGGAGGGGCG-TGACGACGCCGCGCCTTCGGCTCGATTCAGTGCTTGTAGTCATTG
CTAGATGGTCGATGAATCTAAATGTAATTTTTATTATTTCTGG------TGATTGTTACACTGCCATGATTGAAGATGAA
TAGATCGAAAATTTCCCG--CCAAAAAAAATTAAAAAATGAAAAATAAAACAGAAAATAAAAGGGAAAACATAAAATAAA
ACCACGCTACTAGTGTGCAGGCCATGAGGAAAGTGTCGCCATATATGGCATTTTAGTGTATATTCTGCATTTTTT-----
AAACAAGGAAAACTCTATTCTTTTCTTTTTTTG-CGAGCACAAAACTCTATTCGCATACGGACTAGGACAATCAGAGTCT
AATTTAGATGCTTTATTAGGAAAAAGAGGTCAATTTAGATTCGGTAAAAG-ATACATG----------------GTCAAC
TTGGCTTCTTCTATAAAGTC---ATATTCGTATC-----------------------------TGCCGTCCGGAGCGAA-
----------------------A--AGCTGAGAGGAGAGGCAGAGC--------------------------------CA
TTGGGGATTTCTTTGCGTCCACCTACGACGACGGCGCGCACGTACCGGCCGGAGATTGAATTCAGTTTCAACGACGTCC-
ATCAGCAATGGCGTGCAGCAGCAC-CGGCGCCCTCCAGTCATTGCCACTGCTCGTCTTGGAGCACCAGCCCACACGGAAC
GAGTCGACGACAGCGATCGGAGTCGGAGGCGATGATCAAGAAGATATCCCCGAGATGCTCATGTTCAGCGTATCGGAAGA
GAGAACATGCATGAAGGCGACACCGGCCATGATATCCCC--AG--GACAACCAGATCTGCTTCGCCACCCCGCAGGGCTG
GATCTTTATCATCCACGGCGCCTTCCCATGAGAGACCTGGCTGTGGCATCCGATCACCGGAGAGACCATACCCCTCCCGC
CCATACGAGATGACCACTACGTCCCCACCAGCTGCACCTGCCTCCTGACCCACAGCTCCGCCGCGCACCCCGACTGCGCC
GTCGTCCTATTCAACGTCGACGACCCCGACATGTGGTTCTGCCGAGTCAACGGAGGAAGCAGCAGGGCATGGGGGCAGCA
CACGTACAACGTCGGCGAGTACACTCTCCCAGAGCCAGAGGAC------------GACGGCGACGGCC------ACTCCA
CTTCCACTCCCCCGACCAAGCGAGTCATCCCCACCCTCGTCGC-GCGCAGGGAGGGAAGCTGCACTTCATCTTCTCGGAA
TCAAACCAATACAAGATGGGTGTTGTTCACCTCGACTTCGGCACCCCTCTCGCATCCACTGCCGAGCTTCATACGCTCGA
GGACGCGGACGCCGCCATCACTCTACCGGAAGGCATGTGCTCCGGCGTGTCCTGGCTGCTAGACTCCCTCGGGGAGCTGT
TCCGGGTCTGCGTTTGCTTTCGGGAATTTAACCCCGACGACATCGGCGCCGTCCTTGTCTTTAAGATGGATTTCGACCAT
GGGCGCTGCTGGCGCATGGTGCATGACATTGGAGACAGGGTCTTCATGTTGGCTCGTGGGGGTAGTGCAGTTTCTTGCCC
GGCGAGCGCGTGCAACCTGCAGGGG-ACCGCGTCTACTTCATGAAGAACTTCCTCCAGGATGATGGTGATCTGTGCATCT
ACAACACAGCGGAACAAATCATGGAGATTCTTGTGGTTCATGAACGTGACTTAACTCTTGCACGCGTCAAACCTTATTGG
ATCGTACCGCCCGCTGCCTAGTGC-----ATGCATGGGCACAGCCTCAAATCTTACGCTTTCTTTCTAGAGGGTGTGATT
TTTTGTGTGCTTGT-----TCGCACATCCCACATGAATGTAATGAGTTGCTACTAGTAGTAGGGAAGTTAAAATTTTAAT
GGTAGCCTTTGTTCTAGGCACTTGCGCATTTGTTCCGCAAG--TTTTTTGTTTTAAAGTTGACCGCGTTCTTTGTATTAA
GAGCATCTCCAATAGCTTGCCCTATTTTAGGGCATCATTTTGGGTTTGGAGTAAAATTTAGGGCATAAAGATGCATTTTT
TCGC-ACGAGAAAGTACCGTCTCCAACAACTGCCCTATAATAGG-CACCCAAAACAACGAAACCAT---TTTTTTTTAAA
ACGGAACATTTAAACTACTCCGA------------------------------CACATTCAAAGTTTATACATGCAACAT
AGTTCAACTACAACATGTAAACTTAAACTACGGCATGCAAACTACAGACACACTACATGTTATCCCAGTCAATGTCATCA
TTGTCGGAATCCTCCTCCTTCTTGACCCCGGATGATGGCCCTGCCTCGGCATCGTTCTTGCACTTGGACTTCTCGAGATC
CCTCTTCCAGTACAGCTTCATCTCGTTCTGCATGTACTCCGGGTGCTCCCTCGCAAACCTCGCCATTGCCTCCTCTTCTC
CTCTCTCGAATGGTGCCCCACTCATCAATAACAATGAGGGTTGTGGGATCGGGCTAGAATCAATGGTCACCGAGGCTTGA
CGTGCTCCGCCACCGCTCGAGACTCGTCCTCCGGAAAGTTGAGCCTCTCACGGGGCAGGCCCAGCCTCCATAACGCAACA
TCGTAGGCACGGGCAACAATGTTGGCCGTCGGGTAGGTGCCGAGCCAATACCTCCAACTGTCGTGCTAGAACTCGACACC
GAGCCAGCCGGACGGGGGCGGCCGCACCCCCTAGAAGTCGGCGTTGCCTTTGCCCTTCGGTGGCATGACGAGGACGCGGC
GACACCAGGGAAGGAGGTGGCGACTCTAGGGAAAGAGGAGGAGAGGCGATACGGATGCGGCGGCGGCGAATTCCGGCTGC
GGGTGCGCGACAGATTTCGTCGCATTTCGGCTACGGTAGCAAGATTTCGTTGGTCCCGCGAACGATGGGTAGGTGTGGTG
TGTGGATCCGACGACGGAGGGTGCGGTAGTCGTGGATTTGGAGGCGGCGGCACGGGCGATCTGCTAGCCATTTTGTCTTT
GCAGCAGCCACCCACGTGTTGTATATTTACAACATCGGCGGCCGCATTTTAGGGCTGCCCAAATTTGGTTATCCAAAAAG
TTTGTGATAAGATCAGCTGTTGGATATTTTTTTTGCCCCTAAGTGTCCTAAAAAGAGATACTGGCTTAAAATGGGGCATA
TTTTACATTTTCTTAAACAAGTCATCAAACAGTGACTCTGCCTCTGCGGGCACTGTTTATCGAAAAAGGCTTCCGCCCCG
CTTTATATATAAAGCAAAGATCAACATCACCCTGTACAACACACGCCACCACCACACACGCACACACCCAAGGCGGGAAA
CATATATATAGGCGCTGAGCGCAGCAACACCCCCCTAGCACTACCACCGAGAAGAGATGAGGCCGCATAAGACGAACTGT
GGACTCTAAGACGGCGCCTTCAGAAAGGATACGACACCGGAGTGCCGCCACCACCCGATCCAAGGATCAGAGTTTCCCCT
GGAGCCGCACGACGGGAGAGTCGCGACGACGCCTTCAATAAGGGAACAAGCTTCACCGGCCGATCTGTCCGAAGATAGAA
CAGGTTTCACCCCGGCCAATACTCACCGCCACCGGACGCCACACCTTGGCCACCACGCCGCCCACACAACCATGGCCACC
GGGCAGCACCAAGCCACGACCTTTGCCCAAGAGCACCGTGCTACCACCACCAGGGCCGCCGCCCCGGCAAGACCTAGACA
CCACCTCACCCAAGACCCGCCACTACCCCAACCAACGCGACGAGTGGAAAGGTCTGACCTTTCGCACCCCTGGGCGGCCC
ACACTGGCTTCCATCGACCCGTTCAGTAGCACCGGGCGCGAGACAAGCTCAGTCCAGCGGCACCGTGCGCGAGACGAGGT
CGTCCTGCTGCACCGTGCGCGAGACGGGCTCGGTCCTGCTGCACCGTGCGCAAGACAAGCTTGGTCCTGCCGCACCGGGC
GCGAGGCGAGCGATGGACCGCAGCTGGGAGCCGTCTAGCCCATCGACGAGAGAAGCGACCGGACTACGAGGAGAGAGTCG
GAGGCCGACACAAGCCGACCGGGGACGCGCCGACGCCGGCACCTGCCAGCCGCCGCTGCCGCCGACCTGCCAAGCTACCA
TGGAGCCATCCATGGCCGGAGCAGCAGTCACACCGGACCACTGCCCATCCCGCGCCGCCCGCCGAGCTCCAAGCGTCAGA
GCCGCTGGGCACGCACTCGAGCGCCAAGCTGGCGAGGGGGAGGAGCGCTGCGAAGCCCCCAAACCAGGCCGAACCAGGTC
GGAGAAGGAGATGCCTGACCCCACGCATGCATCGGCCACCACGGGCCACCACCTTGCCGCCCACGACGCCGCCGACCGTG
TACAGGAGCCACCGCCGCCCGCACATGCCGGAGCGCCGCTGCGAGCCCAACGCCCCCGCCTGCCGAGGCCTGCCGCCGCG
CGCCCAGCGCTCCGCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTTCACCCCGCGGCGTCACCTGGCGGCGGC
GCGAGGAGGGGAGGAGGAAAGGGCGGCGGCGGCGCCTACGGTTGGAGAGCCCCCGAGTGGCCGAGTCGCCCAGGGCGGGG
GCGACGCGAGGGGAGCATATAAGTCACGGGCACTGTTTCAGTTTATCATTCCATGGTCATGTTAGTAAGAAGAGAAGAGT
AGTTGAAAGTTACAGAGAACAGTGGGTGAGCTATTGAACAGCAGTCAGCAGGCACATGCACAAGCACACGCTACCTCTAT
AAATTCTTCCTCACCTCAAACTGCCGCATCAGGTTTGTTTAGTTCTTTCTGATTGAGTTATGAAGTTTTTTTTTTCCTAC
AATTGAGTTCTGAAGCTGAAACTCTGAATGAATGGGTTCTTCAGCAGCTTCTATCTCCTCTGCTGCTGCTGCCTGCTCCA
AGATTGCTGCCGCCCTTTCTTTGGCCACCCAGGCCCAGGTGGCCCGTGCCCCCTTTCTGAAAGTTTGCCGAGCCACCGAC
CGTATCCACCACGGCATATATTCGCTGAAGAACCCACCTGGCTGAAGATGTTGCATACTGTGTCAACACTATAGGTTATC
CCAATCAATGTCGGAATCCTCCTCCTTCTTGACCCCGGATGATGGCCCTGCCTCGACGTTCTTGCGCTTGGACTTCTGGA
GATCCCTCTTCCAGTACAACTCCATCTCGTACCGCGTGTACTTCGGGTGCTTCCTCGCAAACCTCGCCATCGCCTCCTCG
TCTCCTCTCTCGACTGGTGTCCCACTCATCGATAACAATGAGGGTCATGGGATCGTGCTAGAATCAATGGTCACCGAGAC
TCGACGTGCTACGCCACCGCCCGAGACTCGATCTCCGGAAAGTTGAGCCTCTCGCGCGGCAGGTTGAGCCTCCATGGTGC
AACATTGTAGGCACGGGCGGCAATGTTGGCCGTCGGGTAGGTGCCGAGCCAATACCTCCGACCGTCGTGCTAGAACTCGA
CGCTGAACCGGTCGGACGGGCGCAGTCGCACCCCCTAGAAGTCGGCGTTGCCTTTGCCCTTCGGCGGCATGACAAGGATG
CGGCGACGCCAGGGAAAGAGG-------------------
>chr3D_129
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-----------------------------------------TCTCCGGCATATCTCGTGGGATTCGGTGGGTGGTTGTCT
T-GGTGGATCTATTAGGATCTGATATTTGTTTCTCTTTGT-TCATGTGTCTTTGGGGTGGATCCTTCCGATCTAAACTTC
TCTTCATCGACAGCGGTTGCTATTCTGTTGTGTTGGTCTTATGAGGCCTTAGCACAACGACTTCCCAACTGTCTACTACA
ACAA-TTGTGCCCGGCTCCG-CGAGGGAGGGGCG-TGACGGCGGCGCGCCTTTGGCTCGCTTCAGTGCTTGTAGTCGTTG
CTAGATGGTCGACG-----------AATCTGAATGTAATTTTTACTATTTGATTGTTACACTGCCATGATTGAAGATGAA
TAGATCGAAAGTTTCCCGCAAAAAAATG-----AAAAATGAAAAATAAAACAGAAAATAAAAGGGAAAACATAAAATAAA
AC-------CTAGTGTGCAGGCCATGAGGAAAGTGTCGCCATATATGGCATTTTAGGGTATATTCTGCATATTTTTTTGA
AAACAAGGAAAACTCTATTCTTTTCTTTTTTTGGCGCACACAAAACTCTATTCGCATACGGACTAGGACAA---GAGTCT
AATTTAGATGCTTTA---A-AAAAAGAGTCCAATTTAGATTCAGTAAAAGAATACATG----------------GTCAAC
TTAGCTTCTTCTATATAATGTCAATATTCGTATC-----------------------------TGCCGTCCGGAGCGAA-
----------------------ATAAGCTGAGAGAAGAGGCAGAGC--------------------------------CA
TTGGGGATTTCTTTGCGTCCACCTACGACGATGGCGCGCACGTACCGGCTTGAGGTTGAATTCAGTTTCAACGAGGAGCG
ATCAGCAATGGCGTGCAGCAGCAC-CGGCGACCTCCCGTCATTGCCACTGCTCGTCTTCGAGCACCAGCCCACACGGAAC
GAGTCGACGACAGCGATCGGAATCGGAGGTGATGATCAAGAAGATATCCCCGAGATGCTCATGTTCAGCCTATCGGAAGA
GAGAACATGCATGGAGGCGACACCGGCCATGCTATCCCC--ACATGACAACCAGATCTGCTTCGCCACCCCGCAGGGCTG
GATCTTCATCATCCACGGCGCCTCCCCATGGGAGACCTGGCTGTGGCATCCCATCACCGGAGAGACCATACCCCTCCCGC
CCATACGGGACGACCACTATGTCCCCACCAGCTGCACCTGCCTCCTGACCCACAGCTCCGCTGCGCACCCCGACTGTGCC
GTCGTCCTGTTCGACGTCGAGGACCCCGACATGTGGTTCTGCCGAGTCAATGGCGGAAGCAACAGGGCATGGGGGCAGCA
CACATACGACGTCGGCGAGTACACTCTCCCAGACCCAGAGCCAGAGGACGTCAGTGACGGCGACGGCG------ACTCCA
CTTC----------------------------------------------------------------------------
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>chr1D_913
ATTAGG--------------------------------------------------------------------------
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----GGATTTCTTCGCGTCCATCGACGACGACAGAGCGCACGTACCGGCTGGAGTCTGAATTCAGTTTCAAGGACGATCG
ACCAGGTAGCAATGGCGCTACCCCACGGCACCCTCAGCTCCTTGCCACTGCTCGTCTTCGAACACCAGCCCGCACGGAAC
GAGACGACGGCGGCCACCGGAGAC---------GATGATGAAGATATCCCCGAGATGCTCATGTTTAGCATATCGGAAGA
GAGAACATGCATGGATCCGACACCCGCCATGCTATCCCCGTAG--GACAACCAGATCTGCTTCGCCACCCCGCAGGGCTG
GATCTTCATCCTCCACGACGCCGCCCCGTGGGAGACCTGGCTGTGGCATCCGGTCACCGGAGAGACCATACCCCTCCCGC
CCATACAAGATGACCACTACGTCCCCACCAACTGCACCTGCAACCTCACCCACAGGTCCGCCATGCATCCTGACTGCGCC
GTCGTGTTGCTCGACGTCGCCGACCCCGACATGTGGTTATGCCGAATCAACGGAGGAAGCAGTAGGGAATGGGTGCAGCA
CACGTATGACGTCGGTGAGTACACTCTACCAGAGGG------C------------GACGGCGACGGCG------ACTGCA
CTTCCACTCCCCCGACAAAGAGAGTCATAGCTGGCGTCGCCGCCGCCCTGGGTGGGAAGCTGCATTTCATCTTCTCAGAA
TCAAACCAATACAAGATGGGCGTCATTCACCTCGACTTCGGAACCCCTG---CCCCTACGGCCGAGCTTCACACGCTGGA
GGACGTGGACGCTGCCATCACTCTGCCGGAAGGCATGTGCGGTGGCGTGACCAGGCTGTTGGAGTCACAGGGGGAGCTTT
TCCAGGTCTGCGTTTGCTTTCGGGGTTTTGACCCCAACGACATCGGTGCCGTCCTTGTCCTCAAGATGGATTTCGACCAT
GGCCGCCGCTGGCGCAGGGTGCATGACATTGGAGACAGGGTCTTCATGTTGGCTCACGGAGGCAATGCGGTTTCTTGCCC
GGCGAGCGCATGCAACCTGCAAGGGAACCGTGTCTACTTCATGAAGAACTTCCTCGAGGATGATGGGGATCTGTGCATCT
ACGACGTGGTGGAAGAAGTCCTTGAGATTCTTGTGGTTCATGAAAGGGACTTGACTCTTTCACGCACCAAACCTTATTGG
A-------------------------------------------------------------------------------
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>chr1D_927
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-------------CGCGTCCACCGACGACGACAGAGCGCACGTGCCGGTCGGAGTCTGAATTCAGTTTCAAGGACGATCG
ACCAGCTAGCAATGGCGCTACCCCACGGCGCCCTCAACTCCTTTCCACTGCTCGTCTTCGAACACCAGCCCGCACGGAAC
GAGACGACGGCGGCCACCAGAGGC---------GATGATGAAGATATCCCGGAGATGCTCATGTTTAGCATATCGGAAGA
GAGAACATGCACGGATCCGACACCCGCCATGCTATCCCCGCAG--AACAACCAGATCTGCTTCGCCACCCCGCAGGGCTG
GATCTTCATCCTGCACGGCGCCGCCCCGTGGGAGACCTGGCTGTGGCATCCGGTCACCGGAGAGACCATACCCCTCCCGC
CCATACGAGACGACCACTGCATCCCCACCAACTGCACCTGCTACCTCACCAACAGCTTCGCCACATATCCTGAGTGCGCC
GTCGTGCTGCTCGACGTCGCTGACCCTGATATGTGGTTCTGCCGAATCAACGGAGGAAGTAGTAGGGAATGGGCGCAGCA
CACATATGACGTCGGCGAGTATACTCTTCCAGAG------------------------GGCGACAGCGACGACGACTGCA
CTTCCACTCCCCCGACCAAGAGAGTCATAGCTGGCATGGCCGCCGCCCTGGGTGGGAAGCTGCATTTCATCTTCTCAGAA
TCAAACCAATACAAGATGGGCGTCGTTCACCTCGACTTCGGAACCCCTG---CCCCTACGGCCGAGCTTCACACGCTGGA
GGACGTGGACGCCGCCATCACTCTGCCGGAAGGCAT-TGCTCCGGCGTGACCAGGTTGCTGGAGTCACAGGGGGAGCTTT
TCCAGGTCTGCGTTTGCTTCCGGGGATTTGACCCCAACGACATCGGCGCCGTCCTTGTCCTCAAGATGGATTTCGACCAT
GGCCGCCGCTGGCGCAGGGTGCGTGACATTGGAGACAGGGTCTTCATGTTGGCTCACGGAGGCAATGCGGTTTCTTGCCT
GGCGAGCGCGTGCAACCTGCAAAGGAAACGCGTCTACTTCATGAAGAACTTCCTCGAGGATGATGGGGATCTGTGCATCT
ACGACCTGGTGGAAGAAGTCCTTGAGATTCTTGTGGTTCATGAAAGGGACTTGACTCTTGCACGCACCAAACCTTATTGG
A-------------------------------------------------------------------------------
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>chr1A_927
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-------------CGCGTCCACCGACGACGACAGAGCGCACGTACCGGCCGGAGTCTGAATTCAATTTCAAGGACGATCG
ACCAGCTAGCAATGGCGCTACCCCACGGCGCCCTCAACTCCTTGCCACTGCTCGTCTTCGAACACCAGCCCGCACGGAAC
GAGACGACGGCGGCCACCGGAGAC---------GATGATGAAGACACCCCCGAGATGCTCATGTTTAGCATATCGGAAGA
GAGAACATGCACGGAGCCGACACCCGCCATGCTATCCCCGCAG--GACAACCAGATATGCTTCGCCACCCCGCAGGGCTG
GATCTTCATCCTCCACGGGGCCGCCCCATGGGAGACCTGGCTGTGGCATCCGGTCACCGGAGAGACCATACCCCTCCCGC
CCATACGAGACGACCACTACGTCCCCACCAACTGCGCCTGCTACCTCACCCACAGCTCCACGGCGCATCCTGACTGCGCC
GTCGTGCTGCTCGACGTCGCCGACCCTGACGTGTGGTTCTGCCGAATCAATGGAGGAAGCGGCAGGGAATGGGCGCAGCA
CACGTATGATGTCGGCGGGTACACTCTCCCAGAG------------------------GGCGACGACG------ATTGCA
CTTCCACTCTCCCGACCAAGAGAGTCATAGCTGGTGTCGTCGCCGCCCTGGGAGGGAAGCTGCATTTCATCTTCTCGGAA
TCAAACCAATACAAGATGGGCGTCGTTCACCTCGACTTCGGAACTCCT--------------------------------
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>chr1B_1097
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------------------GGAGAC---------GATGATGAAGATATCCCCGAGATGCTCATGTTTAGCATATCGGAAGA
GAGAACATGCACGGAGCTGACACCCGCCATGCTATCCCCGCAG--GACAACCAGATCTGCTTCGCCACCCCGCAGGGCTG
GATCTTCATCCTGCACGGCGCCGCCCCGTGGGAGACCTGGCTGTGGCATCCGGTCACCGAAGAGACCATACCCCTCCCGC
CCATACGAGACGACCACTACGTCCCCACCAACTGCACCTGCTACCTCACCCACAGCTCCGCCATGTATCCTGACTGCGCC
GTCGTGCTGCTCGACGTCGCCGACCCCGACATGTGGTTCTGCCGAATCAACGGAGGAAGCAGTAGGGAATGGGCGCAGCA
CACGTATGACGTCGGCGAGTACACTCTCCCAGAG------------------------GGCGACGGCG------ACTGCA
CTTCTACTCCCCCGACCAAGAGAGTAATAGCTGGCGTCGTCGCCGCCCTGGGAGGGAAGCTGCATTTCATCTTCTCGGAA
TCAAACCAATACAAGATGGGCGTCGTTAACCTCGACTTCGGCACTCCTG---CCCCTACGGCCGAGCTTCACACGCTGGA
GGACGTGGACGCCGCCATAACTCTACCGGAAGGAATGTGCGGTGGCGTGACCAGTCTGCTGGAGTCACAGGGGGAGCTTT
TCCAGGTCTGCGTTTGCTTCCGGGGATTTGACCCCAACGACGTAGGCGCCGTGCTTGTCCTGAAGATGGATTTTGGCCAT
GGCCGCCGCTGGCGCAGGGTGCATGACATTGGGGACAGGGTCTTCATGTTGGCTCACGGAGGCAATGCGGTTTCTTGCCC
GGCGAGCGCGTGCAACCTGCAAAGGAACCGCGTCTACTTCATGAAGAACTTCGTCGAGGATGATGGGGATCTGTGCATCT
ACGACCTGGTGGAAGAAGTCCTTGAGATTCTTGTGGTTCATGAAAGGGACTTGACTCTTGCACGCACCAAACCTTATTGG
A-------------------------------------------------------------------------------
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>SNPs
-SS-S-SSSSSSSSSSSSSSSSSSS-S-SS--------------------------------------------------
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----------------------------SS---------SS------------------------------------S--
----S---S---------S-SSS----SS--S-------S---------SS---------S--------SS--S------
---------------------S------------S-----S-----------------S------------S----S---
-----------S------------------S--S-------------S----S---------------------S-----
----S-----------------------------S--------S---S--------------------------------
---S------S-------------------------------S--------------S----------S--S--------
------SS------S-S--------SS------------S----------------------S-S-------S-------
----------------------------------------S---------------------------------------
----------S----SS-----------------------S------------------S--------------------
----------------S--------------------------------S--------SSSSSSSSSSSSSSSS------
---------S------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S--SSS-S
SSSSSSSSSSSSSSSSSSSSSS------------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
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-------------------------------------------S------------------------------------
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----------------------------------------S---------------------------------------
-----S----------------------------------------------S-------S-------------------
-----------------------------S--------------------------------S-----------------
------------S-------------------------------------------------------------------
-------------S------------------------------------------------------------------
---------------------S-------S-------------------SSS-S--------S-----------------
---------------------------------------------------S----------------------------
----------------------------S---------------------------------------------------
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S---S----S--------------S------S------------------------------------------------
-----S---S-------S--------------------------------------------------------------
------------------------SSSSS-------SS-S-S----------SS-S----S--------S----------
--------------SSSSS--------S--------------------------------------------S-------
------------------SSSS-SSSS-----------S--SS-------------------S-SS--------------
-----------------S----------------SS-------S-------------------------S----------
-S-SS------S--------------------------------S-----------S---------SSS---S-S-S---
-S--------SS------SS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------
--------------------------------S-------------S--------S-S---------S------------
-S---------------------------S--------------------S-----------------------------
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------------------------------S-S---------------------------------S---S---------
---S---------------------------------------------------S------------------------
----------S-----------------S-------S------------------S--------S------S-----S--
----------------------------------------------------------S-----------------S---
---S---------SS----S---S-------------------------------------------------S------
-S----S---------S----SSSSSSSSSSSSSSSSSSS
>forward_1414
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----------------------------------CAGAGGCAGAGTCATTGGGG--------------------------
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>reverse_6547
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------------------------------------------------------------------GCATTGCCTCCTCG
TCTTCT--------------------------------------------------------------------------
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----------------------------------------
