>input_sequence_58996
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------------------------------------------------------------TTCAATCGAGTTTTACAC--
--GCTCATCTCCCCCATCTGATACAAGACCTGGCAAGGTTTTCTCTCTGGATCGGATGATTCAACCATCTCTATCGGAAC
AGGTGA----CCATGTCCGCCGCCG---TGCCCGGTCGTCCGTCGCGGTCGGCCTCGAGGATCGTGGCCAGGCCAGCGGA
CGGGTTCCACCTCCTGCGCATCGACGGCTACTCGCACACCAAGACGGTCCTCCCCGGCCAGAAGCTCTCCTCCCAGCCCT
TCTACGTCGGCGGCCACAGCTGGCGCGTCGACTACTACCCCAACGGCCG-------------------------------
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---CGACGAGTCCAGCAACTCCGGCGCCATCTCCGTCTACCTCCAGCTGACCGACCCCACCAGGAGCCCCCAGCAGGCGC
GGTACAAGTTCAGCCTGCTGGACCGGGACGGCGTCCCGGCGTACGAGCTCCCGGCCGAGACAGGCTCCTTCACCGGCGTC
TTCCCGAACGTCCACGCTCCCTACGGCCCCGCCATCGGCGACGGCGACGGCGAGGAACCAGCTGGGCCAGGACGCGGCCA
CGACGAGTTCATCTTGAAGGAAGAGCTGGAGAGGCGCCGCGGGGATCTGATCCGCGACGACTGCATCATGATCCGGTGCG
ACGTCGGCGTCACGCAGGTCGACTTTTCCTGCCTGGCGCAAGACGAGATCGTCGGGGACGACGACGGGGCGCACTACGCG
G---CATCCCCGGTGTACGGCCCGTATGGCCCTCCTCGCCGGCATCCGCGCCAGCGCCAGCGTCGTCGTGCGGACGACGA
CGAGTACGTCAAGTGGTGCGTCACCCGAGAACCTGGTGGATCACTGCGCCACCCGGTTGAAGGAGACTATTACGAATAAA
AATTACATTACCGTAGTAGTAGAAAATTCACCTTTACTTCCCATGCATCGTTGATCCTCTCATCCTA-------------
--------------------------------------------------------------ATAGGCTATTTATTAGGC
TTTCTTTGGAGACTTTTCCTTTAA-AATTTATTATAGCAAATACCTCGGTGCGTTGCTAGGGAATAAAACAATATCCAAG
GTTTATATATCACCGATTAACATCGTCATCTTCGTTCAGTACCGTTATGGCTCTCTGGCCACCCAATCA--TTTTTTATG
TATTTTTCATTTTTCTTGTTGTGTTACCCGATTTAAGCAGCGCCTATTAAATTTATTTTCAAAAG---------------
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>chr4B_1_TraesCS4B01G371500
CAAATCTAGACCCTATGAGCCTGAATCAAAAAACATATGTGGTTGTGCATCTGGTCATCCAATGAAGAAGGGACGACAAG
GAGAGGGGATAGGATGGGGACAAGATAAAACCTTGAGTAGCTGCAGGTCCTTGGCGTCCTTCACATCTCCGTGAAGAAGC
ACTTGCCGGCGGTGACCGTGGTGGATGGGGAACTCCCATGGCGTGCTCCATCTGCATCTGCAGTAGAGGATATGAAGAGA
TGGTGAGGTGTAGGGGTGAAAAATCCCAGCAAAGAAGGAAGGAGGGACGAACCTGGGGCCGCCGGAGACGCGCCGGGGAA
GCCCAGCCCGAAACCCTAGCCACGGGGGTTTGGTTGCGAGCGGACGGTAGAGGACGGGAACGGAGAATCTGGACGGAGGG
GAGGGAGGCGCGGACCGTGGGGGCCTTGGGGGCGTGCTGCGCGGCGTCGGAGCTCGCCGGAAGCCGGCGGCGCGGGTGGT
GTTGGCGGCGAG---GAGTTCGTGGGCGAGAGGGAGAGAGGGAGAGGAGTTCGTGTTCTGTTTCTGGCCGTG------T-
-TTTTTTCTTTA------CAAATCAC-CTCGGATCGCGGGTTGATTACTCCAAACGGTAGGGTGTTTTGTGTAAAAACGA
AGCGTTTTCCTGATTAACCACTTAAAATAGGACTGCGGCTTGAATATGAGTAAAA-ACAGGGAGTTTTGTGCAAAAACGC
CAGCG-ACGTACCACCAGAAGCAATGCGTGGTTTATTAGTAGGTAAAGATAAAGATTATTATATTATTATTAGGTAAAGA
TAAAGATAAAGATAAAGATTATATGTACACGAGACTCCAATGGCAACTTTGTACTACTAGCCTGCAAAACCGAAATTAAA
ATATGGAAAGGTCTGTTAGGAGTCTTGGAGCCAAAGTTGGCGCAGAGTAACCAAGTCGGTTAGTCTGTAAAACCGACTTG
GACTAGTCCTGTATCGATCGCATCGAAGCAATATAAATACACAACCAGCGCTCCTTTAATTTCAATCGAGTTTTACAC--
--GCTCATCTCCCCCATCTGATACAAGACCTGGCAAGGTTTTCTCTCTGGATCGGATGATTCAACCATCTCTATCGGAAC
AGGTGA----CCATGTCCGCCGCCG---TGCCCGGTCGTCCGTCGCGGTCGGCCTCGAGGATCGTGGCCAGGCCAGCGGA
CGGGTTCCACCTCCTGCGCATCGACGGCTACTCGCACACCAAGACGGTCCTCCCCGGCCAGAAGCTCTCCTCCCAGCCCT
TCTACGTCGGCGGCCACAGCTGGCGCGTCGACTACTACCCCAACGGCCG-------------------------------
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---CGACGAGTCCAGCAACTCCGGCGCCATCTCCGTCTACCTCCAGCTGACCGACCCCACCAGGAGCCCCCAGCAGGCGC
GGTACAAGTTCAGCCTGCTGGACCGGGACGGCGTCCCGGCGTACGAGCTCCCGGCCGAGACAGGCTCCTTCACCGGCGTC
TTCCCGAACGTCCACGCTCCCTACGGCCCCGCCATCGGCGACGGCGACGGCGAGGAACCAGCTGGGCCAGGACGCGGCCA
CGACGAGTTCATCTTGAAGGAAGAGCTGGAGAGGCGCCGCGGGGATCTGATCCGCGACGACTGCATCATGATCCGGTGCG
ACGTCGGCGTCACGCAGGTCGACTTTTCCTGCCTGGCGCAAGACGAGATCGTCGGGGACGACGACGGGGCGCACTACGCG
G---CATCCCCGGTGTACGGCCCGTATGGCCCTCCTCGCCGGCATCCGCGCCAGCGCCAGCGTCGTCGTGCGGACGACGA
CGAGTACGTCAAGTGGTGCGTCACCCGAGAACCTGGTGGATCACTGCGCCACCCGGTTGAAGGAGACTATTACGAATAAA
AATTACATTACCGTAGTAGTAGAAAATTCACCTTTACTTCCCATGCATCGTTGATCCTCTCATCCTA-------------
--------------------------------------------------------------ATAGGCTATTTATTAGGC
TTTCTTTGGAGACTTTTCCTTTAA-AATTTATTATAGCAAATACCTCGGTGCGTTGCTAGGGAATAAAACAATATCCAAG
GTTTATATATCACCGATTAACATCGTCATCTTCGTTCAGTACCGTTATGGCTCTCTGGCCACCCAATCA--TTTTTTATG
TATTTTTCATTTTTCTTGTTGTGTTACCCGATTTAAGCAGCGCCTATTAAATTTATTTTCAAAAGTTTCAGTGCTGCATT
TGTGGTGTATTTTGGCCATAAAAATCCTAGTATTATATACTACTGTAGGAGGGAGTTTGCGCGGCTTTTTTATTGCAATT
AGAAAGTTCTAGCCCCGGTCATGCTCAAGTCCTTGGTCCGCCACCATGTAGAATCATCCCATG-AAAGAAAACTTTCAAT
GTCGCAAACAATTGATATGAAAGAAAAGATTAATTAGGTGCAGGGATATGAAGAAATGATT-------------------
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------------------------------------------------------------------------------AA
TTGAATGCACTGGAATTGCGCTTTTTTTAGAGTAA---------------------------ACGAGCCCTGCTTTTATA
ACAACAGTTACAGAGAATAAAACCCCAGCTGCAGAAAAGAAAAGCAAAGACCACCACAACG--GCACCAAAGTAACGGGC
GATATG-----------AAAACTACTCTACGGTTCACCACCATCTTTGTCG-----------------------------
---TTACTAAATCTCAGTCGATCGAGACTTCGTTATGTCTTGGTCGATACCCGTGAGATC------TACATTGAGATATG
TGC-----------------------------------------------------------------------------
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----------------------------CTCCATCGCAGCACCGGCTATCGTCGCACCTCCATCGAAGCACCCAATGGCC
GCCGGCGAAGCTTCACTGCAGCGCCACCACCGGCTGGTCCGTCAC--AGCTCCATCATAGCACCCACGATGCACCGGCGC
CTTCATGC-AACAACCAGCCTAATTTGTTGCGTGATGGTGGAGCACGAGCTGCCAGAGTGCATAAATCCGTGAGTATTGT
AGTGTAGATCCACGAGTGGGAGAAAGGTAGGGGAAGAAAAAGCAGAGGCGGGGATGC-----GGCGGCAACGGGATGCAA
CACGGCGGGCGATGGGATGCTGCGAAGGTGTTGTGATGATGCACGCGGCGGCGCGACGATGACGGTGCTTGCGTGATATT
TTTACTCGGAAAAACGAAAAATATATTTAGTTGGAAGCTGTACAAATATTTTTACTCGGAGAGTTTGAATGCTTACGTGA
ACATTATTTTAGGTGCAAGTTGTTTTTGCGAGAGCAGCTTATTATTATATTCACCCTCCGTAAACTAATATAAA
>chr7A_1
CAAATCTAGACCCTATGAGCCTGAATTAAAAAACATATGTGGTTGTGCATCTGGTCATCCAATGAAGAAGGGGCGGCAAG
GGGAGGGGATAGGATGGGGACAAGATAAAACCTTGAGTAGCTGCAGGTCCTTGGCGTCCTTCACATCTCCGTGAAGAAGC
ACTTGACGGCGGTGACCGTGGTGGATGGGGAACTCCCATG-CGTGCTCCACCTGCATCTGCAGTAGAGGATATGAAGAGA
TGGTGAGGTGTAGGGGTGAAAAATCCCAGCCAAGAAGGAAGGAGGGACGAACCTGGGGCCGCCGGAGACGCGCCGGCGAA
GCCCAGCCCGAAACCCTAGCCACGGGGGTTTGGTTGCGAGCGGACGTTAGAGGCCGGGAACGGAGAATCTGGAAGGAGGG
GAGGGAGGCGCGGATCGTGGGGGGCTTGGGGGCGTGCTGCGCGGCGTCGGAGCTCGCCGGAAGCCGGCGGCGCGGGTGGT
GTTGGTGCCGAG---GAGTTCGTGGGCGAGAGGGAGAGAGGGAGAGGAGTTCGTGGTCAGTTTCTGACCGTG-------T
TTTTT---TTTA------CAAATCTG-TTCGGATCGCGGGTTGATTACTCCAAATGGTAGGGTGTTTTGTGTAAAAACGA
AGCGTTTTCCTGATTAACCACTTAAAATAGGACTGCGGCTTGAATATCAGTAAAA-ACAGGGACTTTTGTGCAAAAATGC
CAGCG-ACGTACCACCAGAAGCGATGCGTTA-------------------------------------------TAAAGA
TAAAGATAAAGATTAAGATTATTATTATTAT-------------------------------------------------
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------------------------------------------------------------------TATTAAGGAAAGAT
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--TAGGAAAAGAT-------------------------------------------------------------------
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>chr1B_1
CAAATCTAGACCCTATGAGCCTGAATCAAAAAACATATGTGGTTGTGCATCTGGTCATCCAATGAAGAAGGGGCGGCAAG
GGGAGGGGATAGGATGGGGACAAGATAAAACCTTGAGTAGCTGCAGGTCCTTGGCATCCTTCACATCTCCGTGAAGAAGC
ACTTGACGGTGGTGACCGTGGTGGATGGGGAACTCCCATGGCGTGCTCCATCTGCATCTGCAGTAGAGGATATGAAGAGA
TGGTGAGGTGTAGGGGTGAAAAATCCTAGCCAAGAAGGAAGGAGGGACGAACCTGGGGCCGCCGGAGACGCGCCGGCGAA
GCCCAGCCCGAAACCCTAGCCACGGGGGTTTGGTTGCGAGCGGACGTTAGAGGCCGGGAACGGAGAATCTGGAAGGAGGG
GAGGGAGGCGCGGATCGTGGAGGGCTTGGGAGCGTGCTGCGCGGCGTCGGAGCTCGCCGGAAGCCGGCGGCGCGGGTGGT
GTTGGTGCCGAG---GAGTTCGTGGGCGAGAGGGAGAGAGGGAGAGGAGTTCGTGGTCAGTTTCTGGCCGTG------T-
-TTTT---TTTA------CAAATCTG-TTCGGATTGCGGGTTGATTACTCCAAATGGTAGGGTGTTTTGTGTAAAAACGA
AGCGTTTTCCTGATTAACCACTTAAAATAGGACTGCGGCTTGAATATCAGTAAAAAACAGGGACTTTTGTGAAAAAATGC
CAGCG-ACGTACCACCAGAAGCGATGCGTGGTTTGTTAGTAGGTAAAGATGAAG--------------------------
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>chr1B_1
CAAATCTAGACCCTATGAGCCTGAATCAAAAAACATATGTGGTTGTGCATCTGGTCATCCAATGAAGAAGGGGCGGCAAG
GGGAGGGGATAGGATGGGGACAAGATAAAACCTTGAGTAGCTGCAGGTCCTTGGCGTCCTTCACATCTCCGTGAAGAAGC
ACTTGACGGCGGAGACCGTGGTGGATGGGGAACTCCCATGGCGTGCTCCACCTGCATCTGCAGTAGAGGATATGAAGAGA
TGGTGAGGTGTAGGGGTGAAAAACCCCAGCCAAGAAGGAAGGAGGGACGAACCTGGGGCCGCCGGAGACGCGCCGGCGAA
GCCCAGCCCGAAACCCTAGCCATGGGGGTTTGGTTGCGAGCGGACGTTAGAGGCCGGGAACGGAGAATCTGGAAGGAGGG
GAGGGAGGCGCGGATCGTGGGGGGCTTGGGGGCGTGCTGCGCGGCGTCGGAGCTCGCCGGAAGCCGGCGACGCGGGTGGT
GTTGGTGCCGAG---GAATTCGTGGGCGAGAGGGAGAGAGGGAGAGGAGTTCGTGGTCAGTTTCTGGCCATG------TT
TTTTT---TTTA------CAAATCTG-TTCGGATCGCGGGTTGATTACTCCAAATGGTAGGGTGTTTTGTGTAAAAACAA
AGCGTTTTCCTGATTAACCACTTAAAATAGGACTGCGGCTTGAATATCAGTAAAA-ACAGGGACTTTTGTGCAAAAATGC
CAGCG-ACGTACCACCAGAAGCGATGCGTGGTTTATTAGTA---------------------------------------
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>chr2A_1
CAAATCTAGACCCTATGAGCCTGAATCAAAAAACATATGTGGTTGTGCATCTGGTCATCCAATGAAGAAGGGGCGGCAAG
GGGAGGGGATAGGATGGGGACAAGATAAAACCTTGAGTAGCTGCAGGTCCTTGGCGTCCTTCACATCTCCGTGAAGAAGC
ACTTGACGGCGGTGACCGTGGTGGATGGGGAACTCCCATGGCGTGCTCCATCTGCATCTGCAGTAGAGGATATGAAGAGA
TGGTGAGGTGTAGGGGTGAAAAATCCCAGCCAAGAAGGAAGGAGGGACGAACCTGGGGCCGCCGGAGACGCGCCGGCGAA
GCCCATCCCGAAACCCTAGCCACGGGGGTTTGGTTGCGAGCGGACGTTAGAGGCCGGGAACGGAGAATCTGGAAGGAGGG
GAGGGAGGCGCGGATTGTGGGGG-CTTAGGGGCGTGCTGCGCGGCGTCGGAGCTCGCCGGAAGCCGGCGGCGCGGGTGGT
GTTGGTGCCGAG---GAGTTCGTGGGCGAGAGGGAGAGAGGGAGAGGAGTTCGTGGTCAGTTTCTGGCCGTG-------T
TTTTT---TTTA------CAAATCTG-TTCGGATCGCGGGTTGATTACTCCAAATGGTAGGGTGTTTTTTGTAAAAACGA
AGCGTTTTCCTGATTAACCACTTAAAATAGGACTGCGGCTTGAATATCAGTAAAA-ACAGGGACTTTTGTACAAAAA---
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>chr3A_1
CAAATCTAGACCCTATGAGCCTGAATCAAAAAACATATGTGGTTGTGCATCTGGTCATCCAATGAAGAAGGGGCGGCAAG
GGGAGGGGATAGGATGGGGACAAGATAAAACCTTGAGTAGCTGCATGTCCTTGGCGTCCTTCACATCTCCGTGAAGAAGC
ACTTGACGGCGGTGACCGTGGTGGATGGGGAACTCCCATGGCGTGCTCCATCTGCATCTGCAGTAGAGGATATGAAGAGA
TGGTGAGGTGTAGGGGTGAAAAATCCCAGCCAAGAAGGAAGGAGGGACGAACCTGGGGCCGCCGGAGACGCGCCGGCGAA
GCCCAGCCCGAAACCCTAGCCACGGGGGTTTGGTTGCGAGCGGACGTTAGAGGCCGGGAACGGAGAATCTGGAAGGAGGG
GAGGGAGGCGCGGATCGTGGGGGGCTTGGGGGCGTGCTGCGCGGCGTCGGAGCTCGCCGGAAGCCGGCGGCGCGGGTGGT
GTTGGTGCCGAG---GAGTTCGTGGGCGAGAGGGAGAGAGGGAGAGGAGTTCGTGGTCAGTTTCTGGCCGTG-------T
TTTTT---TTTA------CAAATCTG-TTCGGATCGCGGGTTGATTACTCCAAATGGTAGGGTGTTTTGTGTAAAAACGA
AGCGTTT-------------------------------------------------------------------------
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>chr4A_62
-------------------------------------------------------------ATGAGGAAGGGACGGGAAG
GGGAGGGGAGGGGATGTGGACAAGATAGAACCTTGAGGAGATGCAGGTCCATGGCGTCCTCCACATCTCCGTGAAGAAGC
CCTTAATGGCGGCGACCATGGTGGATGGGGAATTCCCATGGCGTGCTCCATCTGCATCTGCAGCAGAGGACATGAAGAGA
ATGTGAGGTGTAGGGGTGGTGGATCCCAGCCAAGAAGGAAGGAGGGACGAACCTGGG-CCGCCGGAGACGCGCCGGCAAA
GCCCTGCCTGAAACCCTAGCCATGGGGGTGGCGTTTCGAGCGGGCGGTAGAGGCCGGGAACGGAGAATCTGGCTGGAGGG
TAGGGAGGAGCGGACCGTGGGGAGTTGGGGGGCGTGCTGCGCGGCGTCGGAGCTCGCCGGAAGCTTCTGGCATGGGTGGT
GGTGGCAGCGGC---GAGGACTTGAGCGAGAGGGAGA---GGAGGCGAGCCCGTGCTCCTCCTTTGGTCGTG--------
TTTTT---TTTCTTTACCCAAATTTG-CTCGGACTGTGGGTTGAATAATCCAAATGACAGGGTGTTTTCTGCAAAAACGA
ATCATTTTCCCCAAT--CCACTTAAACAGGGACTGCGGGTTGAATTCTCGAAAAT-AGAGGGGCTTTTTTTGTAAGATCG
CTGACAACGTACTACCAGAAGCGATCGGTGGTTTATTATTAGGGAGAGATA-----------------------------
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>chr6B_104
--------------------------------------------------------------------------------
-----------------------GATAAAACCTTGAGGAGCTGCATGTCCATGGCGTCCTTGACATCTCCTTGAAGAATC
CCTTGACGGCGGCGACCGTGGTGGATGGGGAACTCCCATGGCGTGCCCCAACTGCATCTCCAGCAGAGGATTTGAAGAGA
AGGTGAGGTGTAGGGGCAGCGAATCTCGGCCAAGAAGGAAGGAAGGACGAACCTGGGACCACTTGAGACGCGCCGGCGAA
GCCATGCCCGAAACCCTAGCCATGGGTGTGTGGTTGCGAGCGGGCTGTACAGGCCGGGAGCAGAGAGTCTGGATGGAGGG
GAGGGAGGCGCGGACCGTGGGCAGCTT-GGGGCGTGCCGCACTGCGTCGGAGG-CACCGGAAGTAGCCGGCATGGGCGGC
GGCGGCGGCGGTGATGACTTCATGGGCGAGAGGGAGAGTAGGCGAGCCCGT-GTGCTCTGTGTGTGGTTGTGTTTTACTT
TTTTC---TTTA------CAAAACTGCTTTGGACCGCGCGTTGAATAGTCCAAATAATAGGGGGTTTTATGTAAAAATGA
ATCGTTTTTCTAGAGTGCCACTTAAACAGGGAATGCGGGTTGATTTCAAAGAAAT-AGAGGGGGTTTTTAGCAAAAACAC
CAGCG-ACGTACGACCAGAAGCCGTGCCTGGTTTATTAGTAGG-------------------------------------
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>chr6B_109
--------------------------------------------------------------------------------
----------------------------AACCTTGAGTAGCTGCAGGTCCTTGGTGTCCTTCACATCTCCGTGAAGAAGC
ACTTGACGGCGGTGACCGTGGTGGATGGGGAACTCCCATGGCGTGCTCCATCTGCATCTGCAGTAGAGGATATGAAGAGA
TGGTGAGGTGTAGGGGTGAAAAATCCCAGCCAAGAAGGAAGGAGGGACGAACCTGGGGCCGCCGGGGACGCGCCGGCGAA
GCCCAGCCCGAAACCCTGGCCACGGGGGTTTGGTTGCGAGCGGACGTTAGAGGCCGGGAACGGAGAATCTGGAAGGAGGG
GAGGGAGGCGCGGATCGTGGGGGGCTTGGGGGCGTGCTGCGCGGCGTCGGAGCTCGCCGGAAGCCGGCGGCGCGGGTGGT
GTTGGTGCCGAG---GAGTTCGTGGGCGAGAGGGAGAGAGGGAGAGGAGTTCGTGGTCAGTTTCTGGCCGTG--------
TTTTT---TTTA------CAAATCTG-TTCGGATCGCGGGTTGATTACTCCAAATGGTAGGGTGATTTGTGTAAAAACGA
AGCGTTTTCCTGATTAACCACTTAAAATAGGACTGCGGCTTGAATATCAGTAAAA-ATAGGGACTTTTGTGCAAAAATGC
CAGCG-ACGTACCACCAGAAGCGATGCGTGGTTTATTAGTAGGTAAAGATAAAGAT------------------------
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>chr1A_175
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--------------ACCGTGGTGGATGGGAAACTCCCATGGTGTGCTACATCTGCATCTGCAGCAGAGGATATGAAGAGA
AGGTGAGGTGTAGAGGTGGCATATCCCGGCCAAGATAGAGGGAGGGACGAACCTAGTGCCGCCGGAGACGCGCCGGCGAA
CCCTTGCCAGAAACCCTAGCCACGGGGGTGGGGTTGCGAGTGGGTGGTAGAGGCCGGGAGCGGAGAATCTGGACGGAGGG
GAGGGAGGCGCGGACCATGGTGAGCTTGGGGGCGTGCTGCGCGGCGCCGGAGCTCGCCGGAAGCGGCCGGCGTGGGTGGT
GGCGGCGGCGAG---GACTTCATGGGTGAGAGGAAGAGGAGGCGAGCTTG--------TGCGTGTGGTTGTGTCTGTTTT
TTTTC---ATTG------CAAATCTG-ATTGGACGGCGGGTTGAATACGACAAACTACAGGGACTCTTTTGCAAGAATGA
AACGTTTTCTCTGGTAGTTACTTAAAAAGGGATTGCGGGTTGAATTCTAAGAAAT-AGAGGGATTTTTATGCAAAAATGC
CCACG-ACGTACGACCAGAAGCGACCGCTGGTTTATTAGTAGGTAGAGAT------------------------------
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>chr2D_1000
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-----------------------------------------------------------TTTCAATTGAGTTTTCCACGC
TAGCTCATCTCCCCCACCTGACCT-AGACCTAGCAAGGTTTTCTT----GATCAGATCAGGCAAGCATCTCATCTCATCT
CGGCGACCAGCCATGTCGTCCGTCGCCAGCCCCGGTCGTCTGTCGCGGTCGGCCTCGAGGATCGTGGCCAAGCCAGCGGA
CGGGTTCCATCTCCTGCGCATCGACGGCTACTCGTAGACCAAGACGATCCTCCCCGGCCAGAAGCTCTCCTGCCAGGAGT
TCCACGTCGGCGGCCACAACTAGCGCATCGACTACTACCCCAACGGCCG-------------------------------
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---CGACGAATC---CAACTCCGGCACCATCTCCGTCTATCTCCAGCTGACCCACGCCACCCAGGGCCCCCAGCAGGCGC
GGTACAAGTTCAACCTGCTGGACCGGGCCGGCGTCCCGGCGTACGAGCTCCCGGCTGAGACAGGCTCCTTCACCAGCGTC
TTCCCAAACGTCCACGCTCCCTACAACCCCGCCATCGGCGACGGCGACGGCGAGGAACCAG---GGCCAGGATGCGGCCA
TGACGAGTTCATCCGGAAGGAAGAGCTGGAGAGGTGCCGCGGGGATCTGATCCGTGACTACTGCATCATGATCCGGTGCG
ACGTTGGCGTCACGCAGATTAACCTTTCTTGGCTGGCGCAAGACGAAATTATCAGGGACGG---------GCAGCACTAC
G---CACCCCCGCTGCACGACCTGTATGGCCCTCCTCGCCGGCATCCGCACCAGCGCCAGCATCGTCGTGCGGACGACGA
CGAGTACGTCAAGTGGTGTGTGACCCAAGAACCTGGTGGATCACTGGGCCGCCCCTATGGAGGAGAGTATTACGAATAAG
AATTACA-----GTAGTAGAAGAAATTTTACTTTTACTTCCCATG-----TTGATCCTCTTATCCTATAT----------
--------------------------------------------------------------ATAGGCTATTTATTA---
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>chr4D_1000
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-----------------------------------------------------------TTTCAATAGAGTTTTCCACGC
TAGTTCATCTCCCCCACCTGACCT-AGACCTAGCAAGGTTTTCTCGATCGATCGGATCAGGCAAGCATCTCATT-----T
CGGCGACCAGCCATGTCCGGCGCCG---GCCCCGGTCGTCTGTCGCGGTCGGCCTCGAGGATCGTGGTCAAGCCAGCGGA
CGGGTTCCATCTACTGCGCATCGACGGCTACTCGCAGACCAAGAAGATCCTCCCCGGCCAGAAGCTCTCCTCCCAGGAGT
TCCAC-----CGGCCACAACTGGCG-ATCGACTACTACCCCAACGGCCGGACGTAAGTGTGTCAGATTGCTAAATTGTTT
TATTATTCCTACAATATAAACTAGGGGATATATAGGGGGTAACACTGTCCCTATAAATTCCTTTTTCCTTTTCTTTTTTG
TCGGGTTTCGATGGCACTCAAGCAGCCTCACTACTTCGATCTCAGTCTCGCTTGGGCTGCTTTAATGGTAGTCTTTACAT
TTTCTCTTTCACTAGTAGTATGGGGAAGGAGTGTTCCCCCTTATTTACCCCCTTGCCTTGATGGAAATTGGCTTCGCTGC
GCCCTGAATAATCAAAAAGCTGCATGAGAAGATTCATCTCATTTTGGCGAGAGGGAGCGCAACGGCTTTCGCGCTCATCC
CTTGCTTCAAAACTACAGGTTTTAGCCCTCCGTTTGCTGGTCGCCAAAGACGAGAGCTTCGCCTTTGGAAGCGCCAGTAG
CGTAGGGTGACCGGGCCAGCCGAGCCCCTCTGAATTAGTTGGCGGCTTTGATGACTCGACGGTGAATATTAAGGAAAGGA
GAGCGACGAGTC---CAACTCCGGCGCCATCTCCGTCTGCCTCCAGCTGACTCACGCCACCCAGAGCCCCCAGCAGGCGC
GGTACAAGTTCAGCCTGCTGGACCGGGACGGCGTCCCGGCGTACGAGCTGGCGGCCCAGACAGGCTCCTTCACCGGCGTC
TTCCCAGACGTCCACGCTCACTACAACCCCGCCATCGGCAACGGTGACGGCGAGGAATCAG---GGCCAGGATGCGGCCA
CGACGAATTCATCGCGAAGGAAGAGCTAGAGAGGCGCCGCGGGGATCTGATCCGCGACGACTGCATCATGATCCGGTGCG
ACGTCGGCGTCACGCAGATTAACCTTTCATGGCTGGCGCAAGACGAAATTATCAGGGACGG---------GCAGCACTAC
G---CACCCCCGGTGCACGGCCTGTATGGCCCTCCTCGCCGGCATCCGCACCAGCGCCAGCATCATCGTGCGGACGACGA
CGAGTACGTCAAGTGGTGTGTCACCCAAGAACCTGGTGGATCACTGGGCCACCCCTATGGAGGAGAGTATTACGAACAAG
AATTACA-------------------------------------------------------------------------
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>chr4B_1095
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------------------------------------------------------------------------------AC
AGGTGA----CCATGTCCGCCGCCG---TGCCCGGTCGTCCGTCGCGGTTGGCCTCAAGGATCGTGGCCAGGCCAGCGGA
CGGGCTCCACCTCCTGCGCATCGACGGCTACTCGCACACCAAGATGGTCCTCCCCGGCCAGAAGCTCTCCTCCCAGCCCT
TCTACGTCGGCGGCTACAGCTGGCGCGTCGACTACTACCCCAACGGCCG-------------------------------
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---CGACGAGTCCAACAACTCCGGCGCCATCTCCGTCTACGTCCAGCTGACCGACCCCACCAGGAGCCCCCAGCAGGCGC
GGTACAAGTTCAGCCTGCTGGACCGGGACGGCGTCCCGGCGTACGAGCTCCCGGCCAAGACAGTCTCCTTCACCGGCGTC
TTCCCGAACGTCCACGCTCCCTACGGCCCCGCCATCGGCGACGGCGACGGCGAGGAACCAGCTGGGCCAGGACGCGGCCA
CGACGAGTTCATCTTGAAGGAAGAGCTGGAGCGGCGCCGCGGGGATCTGATCCGCGACGACTACATCT---TCCGGTGCG
ACATCGGCGTCACGCAAGTCGACTTTTCCTGCCTGGCGCAAGACGAGATCGTCGGGGACGG---------GGAGCACTAC
GCGGCATCTCCGGTGTACGGCCTGTATGGCCCTCCTCGCCGGCATCCGCGGCAGCGCCAGCATCGTCGTGCGGATGACGA
CGAGTACGTCAAGTGGTGTATCACCCGAGAACCTGGTGGATCACTGGGCCAGCCGGTTGAAGGAGACTATTACGAATAAG
AATTACA-----GTAGTAGAA---AATTTAATTTTACTTCCCATT----GTTGATCCTCTCATAGGCTATTTATTATTAT
AATAGAAAAAGACTTTTGTCCCGTTTTATATATAAAAGCACCGATCACAACAAACACCCATCATAGGCTATTTATTAGGC
TTTCTTTGGAGACTTTGTTTTTTTGAATTTATTATAGCAAATATCTCGGTGCGTTGCTAGGGAATAAAAAAATATCCATG
GTTTATATATCACCGATTAACATCATCATCTTCGTTCAGTACCGTTATGGCTCTCGGGCCACGCAATCATTTTTTATATG
TATTTTTCATTTTTCTTGTTGTGTTACACGATTTAAGCAGTGCAAATTAAATTTATTTTCAAAAGTTTCAGTGCTGCATT
TGTGGTGTATTTTGGCCATAAAAATCCTATTATA------TACTGCAGGAGGGAGTTTGTGTGGTT------------TT
AGAAAGTTCTAGCCCCGGTCATGCTCAAATCCTTGGTCCGCCACCATGTAGAATCATCCCATG-AAAGAAAACTTTTAAT
GTCGCAAACAATTGATATGAA-GAAAACATTAATTAGGTGCAGGGGAT--------------------------------
--------------------------------------------------------------------------------
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-------------------AAAACCCAGCTGCTGAAAAGAAAAGCAAAGACCACCACAAC--CGCACCAAAGTAACGGGC
GATATG-----------AAAACCAAAGTAACGGGCAAAGACCACCACAACCTCAATG-----------------------
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-------------------------------------------------------------------CCGCCACATGCTT
CACTGCAGTGCCACCACCACGTGATGGTGCTCCATCGCAGCACCGGCTACCGTCGCAGA-----------ACCCGATGGC
CGCCGACGAAGCTTCACTATAGCA--------------------------------------------------------
---------CCACCACCGCGCAGCGGTGCTCCATCGCAGCACCGGCTATCGTCGCACCTCCATCGAAGCACCCGATGGCC
GCCGGCGAAGCTTCACTGCAACGCCACCACCGGCTGGCCCG-------------TCACAGCACCCACGACGCACCAGCGC
CTTCATGC-AGCAACCGGCCTGATTTGTTGAGTGATGGTGGGGCACGAGCTGCCACATTGCAGAAATCCGTGAGTACTAT
AGCGTAGATCCATGAGTGGGAGAAAGGTAGGGGAAGAAAAAGCAGAGGCGGG----------------------------
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--------------------------------------------------------------------------
>chr2D_2210
TATAT---------------------------------------------------------------------------
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-----------------------------------------ACTGTGGGAGGGAGTTTGCCGG--TTTTTTATCGCAATT
AGAACGTTCTGGCCCCGGTCATGCTCAAATCCTTGGTCCGCCACCATGTAGAATCATCCCATAAAAAGAAAACTTTCAAT
GT-------------TATGAA-AAAAAGATTAATTACGTGCAGGGCAGTGGCTAATATAAACAGGAGGAAGCAGAAATAA
GCGGGTCTAATTACTATGTGGTCTAATTTATCACAAGAAAAATAGTCAATAACGGCTAGTTCAAAAGTACTATATGTACA
ACGTCGATCTTGAAATGATCGATGGATCATGGGTCGCAAATAAGAGAACACCAGGTCGCTGTGATTACATGTACAGATAA
ATACAGTAGATTACTCCCTCGCAAAATAATAATAATACAGTAATTACCTTGTGTCAGCTGCTTCCATGGTGCGACGCCAA
ATGAACGCACCGGAATTGCGCTTTATTATTTTATTTTATTTTATTTAAGAGAAAAGACTCAGACAAGCCCTGCTTTTATA
TAAAGCAAAAGAGTTCA----------------------AACAGCAAAGACCACCTCCACAACGCACCAAAGTAACAGGC
GATGAAAACTACTAAAAAAAACTCCTCTACGGTTCAACAGCATCAGGTACCGTCACAACAATGTAATTAATAGCGAAATA
GTTTTACTAAACCTCAGTCGACCAAGACTTGATTATGTCTCCGTCGGTGCTATATCCGTGACATTTTACATTGAGATCTG
TGCAAAATTTTCTTCTTAGGCTTTTCTTTTTCTTTCTTGCAAATTATGTCACTTGACTGATTACATCTCCGTCGACGGAG
ACCTAGCCACACTCATAGCAAAAACATAACGAGGTCTAGGACTTGACCACGAGATAAACTTGTAGAGCCAACTTGTGACA
TCCGTGCTACTCCCTTTGGCCCAAAAAAGTGCCGGTGACTTGGTACAACTTTACAGGATGTATAGATGGTAGATAAACTG
CTTGCATGGTGAGAAACTGAGAAGTGCCATCCTCTGGCGGACTCACTCGTCATTGTCCTCTTCACCACGGTTCAGCTTTT
CAGCGAAATCGCCATGGTCATCTGCAGCGGCGGCTTTGGCCTCGAGATACACCTGGTGGCTGAGCCGCGATCTCCTGACC
ACCTGGTCGTCGTCGAGCTCGACACAGCCCTTGGTGATGTACTCGGCCCGAAGCATGGCCTGCTTTGCGGCGAGTTTCTT
CCTCACATCGTTGAAAAAGTCGACGGCGTCGTTCCACTCGTCCTTGTGCGGGTTGTGGTCGTCGTCGTCGTCTCGACGGG
GGAGATCTGTAGTCATGGCCTCATGGGAGAGGAGGTATTCCACCTCCTCCGGCGGTATCACGTTCACGTACGTCCTTTCC
TGGGCTGTCGTTGCATCAGCAGTACCTTGGGTCAACGTCGCCGCACGGGTCGTCCCATCCTCTCATTGCAGTCGCAACAG
GAGCAACCGCTCGTCGTGGGTAGCAGGCCGCCCGGTTCGCAGCAGGAGCCGCACTTCCTGGCTGGCAGCGCAATGACTCC
ACCGTTGGCCGTCGGCGACGCTTCACTGCTGCGCTGACACCGTTCACGGTGGTGCTTCAACGCAGCACCCGCCTGCCGCC
GGTGATATGATATTTCACGGCGGCGCGGCAGTGCTCCATCTCAACACCTTGACGACCGCCCCATGCTTCACTACAGCGCC
GTGATGTTTCGCTGCAGCGCTGATGCCGGCGCGGCGGTGCTCCATCGCAGCACCTCGACGACCGCCGCATGCTTCACTAC
AGCGCCGTGATGTTTCGCTGCAGCGCCGATGCCAGCGCGGCGGTGCTCCATCGCAGCACCTCGACGACCGCCGCATGCTT
CACTGCGGCGCCACCACCGCGCGGCGGTGCTCCATTGCAGCACCGGCTGCTGTCGCACCACCATCGCAACACCCGATGGC
TGCCGGCGAAGCTTCACTGCAGCGCGACAACCGTGCGGCAGCGCTCCATCGCAACACCTGATGGCCGTCGGCGAAGCTTC
ACTCCAGTGCCACCACCCCGCAGCGGTGCTTCATCGCAGCACCGGCTGATGTCGCACCTCCATCATAGCACCCGATGGCC
GCCGGCGAAGCTTCACTGCAGCGCCGCCACCTGCTGACCCTCGTCCTAGCTCCATCACAGCACCCACGACGCACCGGCGC
CTTCACTATAGCAACCAGCCTGATTTGTTGCGTGACGGTGGG-CACGAGCTGCCGGAGCGTAGAAATCCGTGAATACCGT
GGCGAAGATCCACGAGTGGGAGAAACGTAGGGGATG-AAAAGCAGAGGCGGGGATGCAACGCGGAGGCAGCGGGATGCAA
CACGGCGGGCGACGGGATG-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------
>SNPs
---------------------------------------------------------------------------S----
-S------------------------------------------------------------------------------
-----S--------------------------------------------------------------------------
------------------------------S---------------------------------------------S---
-----------------------------------------------------S--------------------------
-----------------------S--------------------------------------------------------
-------------------------------------------------------S------------------------
-----SSS----------------SS------------------------------------------------------
-----------------------------------------------S--------------------------------
----------------------S---------------------------------SSSSSSSSSSSSSSSSSS------
-------------S--------SSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S-------S-----
----------------S----SSSS------S-------------SS-S--------S-SS---S------SS-SSSS--
--------------------------------------------------------------------------------
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--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------SSSSSSSSSS---SS--SSS
----------------------S--------------------------------------S------------------
------------------S---------------------------S--------------------------------S
-------SSSSS-------S--------S--S-------------SSSS-------------------------------
--------------------------------------------------------------------------------
----------------SSS---SS-------------------S-------------------------S--------S-
------------------------S------------------------------S------S------------S----
---------------------------S------------S--SS-----------------------------------
-----------------------------S---SSSSSSS---------------------S--S--------S------
----------------------------S---------------------------------------------------
---------------------S-----------------------SSS--SSS--SSS-SS-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S----S----S-------------S--SSSSSSSS-----------------------------S---------------
SS--SSSSS-S--SSS-SS---S---------S---------------------------S-------------------
------------------------------------S--S----SSSSS-S-----------------------------
-----------S---------S-S------SS--------SS----S-S-SSSSSSSS-S-----------------S--
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------------------S------
-------------------------------------S---SSS-------------S-----------S----------
----------S----------S-------------------S--------------------S-------------S---
--S-------------------------------------------------------------S----S----------
------------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_933
--------------------------------------------------------------------------------
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---------------------------------AAGTTGGCGCAGAGTAACCA---------------------------
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--------------------------------------------------------------------------
>reverse_3286
--------------------------------------------------------------------------------
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-----TGCACTGGAATTGCGCTTTT-------------------------------------------------------
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--------------------------------------------------------------------------
