>input_sequence_58994
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------ATGCT
GCTCTCCCAGTCTCCAGCCGCTACCCATCCACAGCTTCCCACCTCCTCG---CGCCGCACACGCCGCTCGGCACAGCCAT
GCCCGCGCGGCGCGGCCGCCGAGTCGCTCCTCCCTCGCGGGCTACGGCCGGAGTCGCTGCCACGCCACGTGGCGGTGGTG
ATGGACGGGAACTCGCGGTGGGCGCGCGCGCGGGGCATGCCGCCGGCGTTCGGGCACGAGGCCGGGCGGCGCGCGCTGGT
GGAGACGGTGCGGCTCTCCCGCGCCTGGGGCATCCGCGCGCTCACAGCCTTCGCCTTCTCCCACGAGAACTGGAGCCGCC
CCAAGGTAGCACATCACACCT---------------------GGCCGCG-CGCGCGCGCT--CTCTCTTTTGCCGGCTCC
CTCCGGCCTCCGCCCTGAGCTTGACGGTTCTTGGAATTTGCAGGCGGAGGTTGACTTCCTGATGGGGCTGTTCGAGCGGG
TGATCCACGACAGCGTCGCCGAGTTCTTGAGGTA------------CACACGCCAGCCACTCCGCCGCAAATTAATGGCC
TCACATTTTGGCCGTCTC------CATTCTGATAAGATGCACCCGAGCACTCCACTCCGTGTGACAGCCGGCTCGGATAG
ATGAATTAGCACACTGATCTCCACAAATCCGAGTGATAAACACTAGGATTACA---GACGAACAGCTCGATTTTTAC---
--------------------------------------------------------------------------------
--TGTTAAATAACATGTGGAT-----------------------------------------------------------
---------------TGCTGTTCTGCGCAGGGACGGGATTCGTCTACGTGTGATCGGCGACTGCTCGAGGCTGCCGGCGT
CTCTGCGGAGGACGGCAAGGGACGCCGAGGAGGCAACGAGGGACAACTCGCAACTCGACCTGACGCTGGCGATCAGCTAC
AGCGGGCGAAGGGACATAGTGCAAGCCTGCCGGAGCCTCGCGCAGAAGGTGCGCGGCGAGCTGCTCAGGCCGGAGGACAT
CGACGAGTCGCTGTTCGCCGGCGAGCTCGAGACGAGCCGCGGTAGCGAGCTCCCGTGTCCTGACCTGCTCATCCGGACCA
GCGGCGAGCTGCGGCTGAGCAACTTCTTGCTGTGGCAGTCGGCCTACTCGGAGCTCTTCTTCACCGACACCCTGTGGCCG
GACTTCGGGGAGGCTGACTACCTCGAAGCGCTGTGCTCCTTCCAGAGCAGAGACAGGCGGTTTGGCCGGAGGAATTCGTA
G-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chr3B_1_TraesCS3B01G402000
ATCAATGTGTTAGGATAGTTTGAGCAATAGATTTGAGGATTTGTGAAACGGAAATTTATAGGATAGGGGATCCGCTAACT
ATGGAATAGTGATTTCCCTAAAAAAGTAGTAAAGTGGATAGGTGAAAAACACACACCCTTCAACACTATCTCCACTACGA
GTCCATTTTTCCTAATTGGTTCCCATTAGGCTTGGAGAGCATTAGTTATGTGATAGTGGTGATACCCTCGCTCGAAACCC
TAAACCCCTAATCTTTTATGT---AGTCACTTGTCTTTAGCTTTATTTTTGCCTAAGCTCCACACCGACTCTAGATTAAT
CATGCATCCTAGCATCGTCGATTCAAGTTGAAGGAGCAGAGGAATACGAGTTGGAGTCTCAAATATGGATCTAAGTGAAC
CGAGAAATATGTATTTCAAAGTCAATCAC--------CGATTTCTAAAATTTGCATTTTACTCAATCCACGTTTGATAAA
GAATCAAC-GAGTGTGATAGCCAACTTAGAAATAGAGTAGAAGCTGTTTCATGAGCATTTTTTG--AGAATAGGTCTCAA
TCGACCAAGACTTGAGGAGTTCATGG---------------------------------------------ATGTCAT--
--------------------------------------------------------------------------------
-----------GTGTTTGTATGTAGATTCCACGCCATC-GATTTTGATTTAGGCCGTGTTTGGCATTGCGGTGAATTCAC
TTAATCCCGTTTGCCCCACCTGTTTCTTCCTACTATTTTAGTGTTTGTTTGACCAATTTTTGCTTACGTTTGTGTCC--A
AA--AAATTCATTACAATTAAACTATAAAACGTCTTATATTTTAGGACAAAGGTAGTTTAAAATAAGCCCACCGGTTCAG
CAAGCATAAAG---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------T-AATCCTTGATGAGAATCATGCGATTGTAGGCTAGCAATTC
CACTTGGAAAA-ATGCTTAGCCGAACGTGCTCCAGTCA--GTGTACGTTCATCAAAAC------GACACGTTAAACATGT
GGCTTGACCCTTCGGGTTTCGAAGCAACGGCCAACGGCAACAGGACGAG-CACACCACCGAGAGACCCCAATCCCATGCT
GCTCTCCCAGTCTCCAGCCGCTACCCATCCACAGCTTCCCACCTCCTCG---CGCCGCACACGCCGCTCGGCACAGCCAT
GCCCGCGCGGCGCGGCCGCCGAGTCGCTCCTCCCTCGCGGGCTACGGCCGGAGTCGCTGCCACGCCACGTGGCGGTGGTG
ATGGACGGGAACTCGCGGTGGGCGCGCGCGCGGGGCATGCCGCCGGCGTTCGGGCACGAGGCCGGGCGGCGCGCGCTGGT
GGAGACGGTGCGGCTCTCCCGCGCCTGGGGCATCCGCGCGCTCACAGCCTTCGCCTTCTCCCACGAGAACTGGAGCCGCC
CCAAGGTAGCACATCACACCT---------------------GGCCGCG-CGCGCGCGCT--CTCTCTTTTGCCGGCTCC
CTCCGGCCTCCGCCCTGAGCTTGACGGTTCTTGGAATTTGCAGGCGGAGGTTGACTTCCTGATGGGGCTGTTCGAGCGGG
TGATCCACGACAGCGTCGCCGAGTTCTTGAGGTA------------CACACGCCAGCCACTCCGCCGCAAATTAATGGCC
TCACATTTTGGCCGTCTC------CATTCTGATAAGATGCACCCGAGCACTCCACTCCGTGTGACAGCCGGCTCGGATAG
ATGAATTAGCACACTGATCTCCACAAATCCGAGTGATAAACACTAGGATTACA---GACGAACAGCTCGATTTTTAC---
--------------------------------------------------------------------------------
--TGTTAAATAACATGTGGAT-----------------------------------------------------------
---------------TGCTGTTCTGCGCAGGGACGGGATTCGTCTACGTGTGATCGGCGACTGCTCGAGGCTGCCGGCGT
CTCTGCGGAGGACGGCAAGGGACGCCGAGGAGGCAACGAGGGACAACTCGCAACTCGACCTGACGCTGGCGATCAGCTAC
AGCGGGCGAAGGGACATAGTGCAAGCCTGCCGGAGCCTCGCGCAGAAGGTGCGCGGCGAGCTGCTCAGGCCGGAGGACAT
CGACGAGTCGCTGTTCGCCGGCGAGCTCGAGACGAGCCGCGGTAGCGAGCTCCCGTGTCCTGACCTGCTCATCCGGACCA
GCGGCGAGCTGCGGCTGAGCAACTTCTTGCTGTGGCAGTCGGCCTACTCGGAGCTCTTCTTCACCGACACCCTGTGGCCG
GACTTCGGGGAGGCTGACTACCTCGAAGCGCTGTGCTCCTTCCAGAGCAGAGACAGGCGGTTTGGCCGGAGGAATTCGTA
GCGCGA---CACCAAAAGTTGGTGTTTTTAGAAGCTTTA----GTGCATGACTGTTTTGTAGCCCAAAAATGCTAGACAT
ATAGCTTTTTACATGCTCTTTCCATCTAACAACCAATCACAAACCTCTCCCCCCCTGATTTCCTCTCCCCCCTCTGAATT
TCAGGGAAGTGGGCTGTCCCGCTCACCTGTTGGTCAATAAAGATTAACCCACCCCGTAAAAGACTGTAAACTGTTTGTAC
GTGTAGCATTGTTGTTTGTAGCCACACTTGATCGGTAGGTACATTGGGCGGA----GGCATTTCAAGCAGATCTCTTACA
GGCAAACTGTCAAAACTGCTCCTTGTTTCACATTACTATTTTTTTAGGGAAATCACTATTTTGCAGCTAGCAGATCCCCT
ATAATTTTAGTCTTT--CAAAAAAATCAAACATGTTTTTTTAACATAAATTCATTTCAAACACATATTTAAAGTAATAAT
AGAATAATTCGATAACTTCTAGACATTAATATCATACATACTACTCATCATCACCTAAACCAAGAACATCATTAATGCAA
TATCTCTCACCAAAAAAGAGAGCTGCAAATGATCCGTCGACCGATGAGCAGCCCGAACCATGGACTCAAGAGGAATGCCC
GGTTCCTCCGTTCCCATTGGCATTGGAAGCTTTGATCCTGTGTGCTCCGACCACTTCTGCTCCAACCACGTTGCGACGAT
TTGCTCGTCGCACGGCTATGAAGAGCAGAACCTTTTGAACTTGCTATCTGCAGTGTCGAGAGTGTATTT-GTATGGACTT
GATGATAGTGAGAGTGTATTTTGTATGAACTTAATGAAAGATGTAGTGCAGTTGCGACGACGAGTTTGAAATAAAAGCAT
TGGTCAAGAATTCGTCCGATTAATTAGTTAACAGGCCAGTTAATCGCTACTCTTAGGATGGCCGAATCGAATAGCGCCTA
TTCGTCGCATTAACTTGTCAGGCCGATTAACTTGCCCATGAGACCGATTAATAGC
>chr3A_122
--------------------------------------------------------------------------------
-----------------------------------------GTGAAAAACACACACTCTCCGACACTATCTCCACTATGA
GTCCATTTTGCCTAATTTGTTCCCTTTATGCTTGGAGATCATTAGTTATGTGATAGTGGCGATAACCTCGCTTGAAACCC
TAAACCTGTAATATTTTTTACTTAAGTCACTGGTCCTCAGCTTTATCTTGCCTTCACTCCACGT-CGACTCTAGATTAAT
CATGCATCCTAGCATCGTCGACTCAAGTTGACGGAGCGGAGGAATGCGAGGTGGAGTCTCAATCATGGATCTAAGTGAAC
CGAGAAATAGTTATTTCTAAGTCCATCAAGCTACACATGATTTCTAAAATTTGCTTTTTACTCAATCCATGTTGGACAAA
GAATCAAC-AAGTGTGATCACCAACTTAGAAATAAACATC-----GTCTCCTGAGCATTTTTGG--A-AAAAGGTCTCAA
TCGACCAATACTTAAGGATTTCACGGTTGATCGATCTTGTCGCGGGATTTAATGCCAATGTGAGGAAGATTCGAACTCGA
TTTCACGGTTTTTAATGCCAATCTTGTTGCGGGATTCAAACTTGATTTCACCGTGAAATCCTTAAGTATTGGTCAAGCGT
GAAATCCTTAAGT-TTTGCTTGTGGCTTCCATGCCATTTGACTTTGATTTAGGCTACCTTTGGCATTGCGGTGAATTCAC
TTAATCCCGTTTGCTTCACCTGTTTCTCCCTA---TTTTAATGTTTGTTTGACCCACTTTTGCTTACGGCTGTGTCAAAA
AA--AAATTCATTACAGATTACAAAATAAAAGTATGCACAACACAAT--------------------------GGTTCAA
CAAGCATAAACGGACCCTGATAAGTACCTGACGTGTGGCACGAGCACATGGCAACTCCGAACATTTTTTATGGCAAGTTT
AGTGACATGAGGATGGCAACTTTAGTTGTCAAACATGACAATTTTTATGCTTCAATTTATTTTTGACACAAACTTACCAT
ATGTCACTGA----------------ATTCTGCAATCCTTGCGTGACTGAAATTGCCATTGAAAAAGATCAAGACCAGAG
TGCCACGCATCTGGTATGACACTTATCATTTGGGTAAATAAATCCTTGATGAGGATCTTGCACTCTAAGACTAGCAATTC
CAACAAAGAAA-TTACTTAGCCGAACGTGCTTTTAGGAGTGTATATGTTCATCAAAAC------TACACGTTAAACATGT
GGCTTGACCCTTCGGGTTTCGAAGCAACGGCCAAGCCAACGGCAACGGGACACACCACCGAGAGACCCCAATCCCATGCT
GCTCTCCCAGTCTCCAGCCGCTACCCATCCGCAGCTTCCCACCTCCTCC---CGCCGCACGCGCCGCTCCGCACAGCCAT
GCCCGCGCGGCGCGGCCGCCGAGTCGCTCCTCCCTCGCGGGCTGCGGCCGGAGTCGCTGCCGCGCCACGTGGCGGTGGTG
ATGGACGGGAACTCGCGGTGGGCGCGCGCGCGGGGCATGCCGCCGGCGTTCGGGCACGAGGCCGGGCGGCGCGCGCTGGT
GGAGACGGTGCGGCTCTCCCGCGCCTGGGGCATCCGCGAGCTCACCGCCTTCGCCTTCTCCCACGAGAACTGGAGCCGCC
CCAAGGTAGCACATCACACCT---------------------GACCTGGCCGCGCGCGCG--CGCGTTTTTGCCGGCTCC
CTCCGGCCTCCGCCCTGAGCTTGACGGTTCTTGGAATTTGCAGGCGGAGGTTGACTTCCTGATGGGGCTGTTCGAGCGGG
TGATCCACGACAGCGTCGCCGAGTTCTTGAGGTA------------CGCACGCCAGCCAGTCCGCCGTAGATTAATGGCC
TCACATTTTGGCCGTCTCTATTGCCATTCTGATAAGATGCACCCGAGCACTCCGCTCCATGTGCCGGCCGGCTCCGGCAG
ATGAATTAACGCACTAATCTA----------AGTGATAACCACTAAGATTACGGCTGAAGAACAGCCCGATTTCTAC---
--------------------------------------------------------------------------------
--TCTAGCACTGA---TGGGT-----------------------------------------------------------
---------------TACTGTTTTGTGCAGGGACGGAATTCGCCTACGTGTGATCGGCGACTGCTCGAGGCTGCCGGCGT
CTCTGCGGAGGACGGCAAGGGACGCCGAGGAGGCAACGAGGGACAACTTGCAGCTCGACCTGACGCTGGCGATCAGCTAC
AGCGGGCGAAGGGACATAGTGCAAGCCTGCCGGAGCCTCGCCCAGAAGGTGCGCGGCGAGCTGCTCAGGCCGGAGGACAT
CGACGAGTCGCTGTTCGCCGGCGAGCTGGAGACGAGCCGCGGCACCGAGCTCCCGTGCCCCGACCTGCTCATCCGGACCA
GCGGCGAGCTGCGGCTGAGCAACTTCTTGCTGTGGCAGTCGGCCTACTCGGAGCTCTTCTTCACCGACACCCTGTGGCCG
GACTTCGGGGAGGCTGACTACCTCGAAGCGCTGTGCTCCTTCCAGAGCAGAGACAGGCGGTTTGGCCGGAGGAATCCGTA
GCGCAAGGCCACCAAAACTTGGTGTTTTTAGAAGCTTTA----GTGCATGACT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------CACTTGATCAGTAGGTACATTGGGCAGATAAGGGCATTTCTAGCAGATCTCTTCTG
GGTAAACTGTCAAAAGTGCTCCTTATTCCACTTTAC--TTTTTTTAGGGATATCACTATTTTGCAGCTAGCAGACCCCCT
ATAATTTTAGTCTTTAACAAAAAAATCAAACACATCTTTTAAACATAAATTCATTTCAAACACACATTTAAAGTAATAAT
AGCATAATTCCATAACTTCTAGACGTTAATATCGTACATACTACTCATCATCACCTAAACCAAGAACATCAACAGTGCAA
TAGCTCTCACCAAAAAAGAGAGCTGCAAATGATCCGTCAGCCGATGAGCAGCCCGAGCCATGGACTCAAGAGGAATGCCC
GGTTCCTTTGTTCCCGTTGCCTTGGAA-GCTTTTATCCCATATGCTCAGACCACGTCTGCTCCAACCACATTGCGAAGAT
CAGCTCGTCGCATGGCAATGAAGAGCAGGATCTTTTGAACTTGCTATCTGCAGTGTCGAGAGTGTATTTTGTATGAACTT
GATGACAGTGAGAGTGTATTGTGTATGAACTTCATGAAAGACGTAGTGCAGTTGCAATGACGAGTTTAAAAATAAAAG--
--------------------------------------------------------------------------------
-------------------------------------------------------
>chr3D_124
--------------------------------------------------------------------------------
-------------------------------------------GAAAAACAAACACTCCCCGACACTATCTCCACTATGG
GTCCATTTTGCCTAATTGGTTCCCTCTATGGTTGGAGAGCATTAGTCATGTGATAGTGGCGATAACCTCGCTTGAAACCC
TAATCCTGTAATCTTTCTTACTTAAGTCAGTGGTCCTCAGCTTTATCTTGTTTTCGCTCCATGT-CGACTCTAGATTAAT
CCTGCATCCTAGCAACGTCGACTCAAGTCGAAGGAGCGGAGGAATACGAGTTGGAATCTCAAACATGG-TCTAAGAGAAC
CTAGAAATAGTTATTTCTAAGTTCATCAAGCCACACACGATTTCTAAAATTTGCATTTTACTCAATCCATGTTGGACAAA
GAATCAACTGAGTGTGATCTACAACTTAGAAATAGAGACC-----ATCTCCTGAGCATTTTTGAAAA-AAAAAATCTTAA
TTGACCAAGACTTGAGGATTTCATGATTGATCAATCTTGTGGCAGGATTAAATCAAGTTCGAATCCTCCTCATGTCAT--
--------------------------------------------------------------------------------
-----------GT-TTTGTTTGTGGTTTCCACGCCATC-GACTTCGATTTAGGCTGCCTTTGGCATTGCGGTGAATTCAC
TTAATCCCGTTTGCTCCATCTGTTTCTCCCTA---TTTTAATGTTTGTTTGACCAACTTTTGCTTACGGCTGTGTCAAAA
AAATAAATTCATTACAGATTACAAAATAAAGGTACGCACAACACAAT--------------------------GGTTCAA
CAAGCATAAACAGACC-TGATAAGTACCTGACGTGTGGCACGAGCACATGGCAACTCTAAAC--------------GTTT
AGTGATGCGAGGATGGCAACTTTAATTGTTAAGCATGACAATTTTCATGTTTCAATTAATACAAATTTGAGTCATCTATT
TTGAAACGAAAAGTATATGTCAATATATTCTGCCATCCTTGCGTGACTGAGATTGCCATCGAAAAACGTCAAGGCTAGAG
TGTCACGCATCTGGTGTGACATTTATCATTTGGTAAACT-AATCCTTGACGAGTATCTTGCAATTGAAGACTAGCAATTC
CACTAAAAAGATTTACTTAGTCGAACGTGCTTCAG-----GGGTATGTTCATCAAAACTAGGAGTACACGTTAAACATGT
GGCTTGACCCTTGGGGTTTCGAAGCAACGGCCAAGCCAACGGCAACGGGACACACCACCGAGAGACCCCAATCCCATGCT
GCTCTCCCAGTCTCCAGCCGCTACCCATCCGCAGCTTCCCACCTCCTCCTCCCGCCGCACGCGCCGCTCGGCACAGCCAT
GCCCGCGCGGCGCGGCCGCCGAGTCGCTCCTCCCTCGCGGGCTGCGGCCGGAGTCGCTGCCGCGCCACGTGGCGGTGGTG
ATGGACGGGAACTCGCGGTGGGCGCGCGCGCGGGGCATGCCGCCGGCGTTCGGGCACGAGGCCGGGCGGCGCGCGCTGGT
GGAGACGGTGCGGCTCTCCCGCGCCTGGGGCATCCGCGCGCTCACCGCCTTCGCCTTCTCCCACGAGAACTGGAGCCGCC
CCAAGGTAGCACATCACACCT---------------------GACCGCG-CGCGCGCGCG--CGCTCTTTTGCCGGCTCC
CTCCGGCCTCTGCTCTGAGCTTGACTGTTCTTGGGATTTGCAGGCGGAGGTTGACTTCCTGATGGGACTTTTCGAGCGGG
TGATCCACGACAGCGTCGCCGAGTTCTTTAGGTA------------CACACGCCAGCCAGTCCACCGTAGATTAATGGCC
TCACATTTCGTCCGTCTC------CATTCTGATAAGATGCACCCGAGCATTCCACTCCGTGTGACAGCC--------TAG
ATGAATTAACGCACTGATCTCCCCAAATCCGAGTGATGAACACAAAGATTACA---GATGAACAGCTCGATTTTTAC---
--------------------------------------------------------------------------------
--TGTTAGATAACATGTGGAT-----------------------------------------------------------
---------------TGCTGTTCTGCGCAGGGACGGAATTCGTCTACGTGTGATCGGCGACTGCTCGAGGCTGCCGGCGT
CTCTGCGGAGGACGGCAAGGGACGCCGAGGAGGCAACGAGGAACAACTCGCAGCTCGACCTGACGCTGGCGATCAGCTAC
AGCGGGCGAAGGGACATAGTGCAAGCCTGCCGGAGCCTCGCCCAGAAGGTGCGCGGTGAGCTGCTCAGGCCGGAGGACAT
CGACGAGTCGCTGTTCGCCGGCGAGCTCGAGACGAGCCGCGGCAGCGAGCTCCCGTGCCCCGACCTGCTCATCCGGACCA
GCGGCGAGCTGCGGCTGAGCAACTTCTTGCTGTGGCAGTCGGCCTACTCGGAGCTCTTCTTCACCGACACCCTGTGGCCG
GACTTCGGGGAGGCTGACTACCTCGAAGCGCTGTGCTCCTTCCAGAGCAGAGACAGGCGGTTTGGCCGAAGGAATTCGTA
GCGCAA---CACCAAAAGTTGGTGGTTTTAGAAGCTTTAATTAGTGCATGACTGGTTTTGTAGCC---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chr4B_1095
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------CGGCGGCCGAGGAGCTCCTCTCACAAGGGCTCCGGGCGGAGTCGCTGCCGCGGCACGTGGCGCTGGTG
ATGGACGGGAACTCGCGGTGGGCGGCAGCGCGGGGCCTGCCGCCGACGGACGGGCACGAGCACGGGATGCGCGCGCTGAT
GAGGACGGTGCGGCTCTCCCGCGCCTGGGGCATCCGCGTCCTCACCGCCTTCGGTTTCTCGCTCGAGAACTGGAATCGCC
CCAAGGCCGGCATCTCTAATCCTACTACCCTTCTCACTCCTCGATCGTG-CGCGCCCGCC--CGCCATGCACACATGCT-
----CTTGATGGATTGACGGTGTTCT-TTCATGGCATTTGCAGGCGGAGGTTGACTTCTTGATGGCCTTGATCGAGAGGT
TTATCAACGACAACCTCGCCGAGTTCTTGAGGTA------------CGTTAATTACATGT------GCAAATTAATTACT
TCATACTCCCTCTGTAACTTGATTTACTTGAGACGTTATTTGACACTGTCATAGACGACTATAGAAATATCTTACTGTAT
AGGAGTAAAAAGTTACGGAGGTAGTATTAATTTTTGACCCATCACA------A---GGAGAAGAGATCGATTATATTTC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TGTGCTAATCTTTTCAGGGAAGGGACCCGTCTACGTATAATCGGTGACCGCTCAAGGCTGCCGATCT
CTGTGCAGAAGACTGCACGAGACGCCGAGGAGGCAACAAGAAACAACTCGCAGCTCGATCTAGTCCTAGCCATCAGCTAC
AGCGGGCGAATGGACATTGTGCAGGCATGCCGGAATCTCGCCCAGAAAGTGGACGCCAAGCTGCTCAGGCCGGAGGACAT
CGACGAGTCGCTGTTCGCCGACGAGCTCCAGACGAGCGAAACATCT---------TGCCCGGACCTGCTCATCAGGACCA
GCGGCGAGCTGAGGCTGAGCAACTTCCTGCTATGGCAGTCGGCTTACTCGGAGCTCTTCTTCACCGACACGCTCTGGCCT
GATTTCGGGGAGGCCCAATATCTCCAAGCCATGATGGCCTTCCAGAGCAGAGACAGGCGCTTTGG---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chr4B_1095
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------CGGCGGCCGAGGAGCTCCTCCGACAAGGGCTCCGGCCGGAGTTGCTGCCGCGGCATGTGGCGCTGGTG
ATGGACGGGAACTCTCGGTGGGCGGTAGCGCGGGGCCTGCCGCCGACGGACGGGCACGAGCACGGGATGCGCGCGCTGGA
GAAGACGGTGCGGCTCTCCCGCGCCTGGGGAATCCGCGTGCTCACTGCCTTCGGCTTCTCGCTCGAGAACTGGAACCGCG
CAAAGGCCAGCATCTATAATA-------CCTTCTCACTCACTCCTCGTG-CGCGCCCGCCACCGCCATGTATACATGCAT
AGCCCTTGATTGATTGATGGTGTTGT-TTCTTGGCATCTGCAGGTGGAGGTTGACTTCTTGATGGCGTTGATCGAGAGGT
TTATCAACGGCAACCTCGACGACTTCTTGAGGTAGTACGTACGGATCGATGACTACTTGT------GCAAATTAATAGGC
TCATATATATTAGTTTTG--------------------------------------------------------------
--------------------------------------------------------------GAGCTCGATTATATTCAT
GGTTTTCAATAGCGCGCTAAATCTTCGCTCTTAAAAGAAGGTCTTGCGCTAATGAATTTTGGTCCAAATATATGAACAAA
CTTTTTAAATGGCATGCGCTATAGCGTTTACAAGAGGTCCGCCGCTAAAGAGCATAGCCCATTATTTAGAACTATGATTA
TATTGGTGACTTGTGTGTTACTCTTTGCGGGGAAGGGACCCGTCTACGTATAATTGGTGACCGCTCAAGGCTGCCGATCT
CTGTGCAGAAGACCGCACGAGATGCCGAGGAGGCAACAAGGAACAACTCGCACCTCGATCTAGTCCTAGCCATGAGCTAT
AGCGGGCGAATGGACATTGTGCAGGCATGCCGGAATCTCGCCCAGAAGGTGGACGCCAAGCTGCTCAGGCCGGAGGACAT
CGACGAGTCGCTGTTCGCCGACGAGCTACAGACGAGCGAAACATCT---------TGCCCGGACCTGCTCATCAGGACCA
GCGGCGAGCTGAGGCTCAGCAACTTCCTGCTATGGCAGTCAGCTTACTCTGAGCTCTTCTTCACCGACACGCTCTGGCCT
GATTTTGGGGAGGCCCAATATCTCCAAGCCTTGAGGGCCTTCCAGAGCAGAGACAGGCGCTTTGG---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chrUn_1095
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------CGGCGGCCGAGGAGCTCCTCCGACAAGGGCTCCGGCCGGAGTTGCTGCCGCGGCATGTGGCGCTGGTG
ATGGACGGGAACTCTCGGTGGGCGGTAGCGCGGGGCCTGCCGCCGACGGACGGGCACGAGCACGGGATGCGCGCGCTGGA
GAAGACGGTGCGGCTCTCCCGCGCCTGGGGAATCCGCGTGCTCACTGCCTTCGGCTTCTCGCTCGAGAACTGGAACCGCG
CAAAGGCCAGCATCTATAATA-------CCTTCTCACTCACTCCTCGTG-CGCGCCCGCCACCGCCATGTATACATGCAT
AGCCCTTGATTGATTGATGGTGTTGT-TTCTTGGCATCTGCAGGTGGAGGTTGACTTCTTGATGGCGTTGATCGAGAGGT
TTATCAACGGCAACCTCGACGACTTCTTGAGGTAGTACGTACGGATCGATGACTACTTGT------GCAAATTAATAGGC
TCATATATATTAGTTTTG--------------------------------------------------------------
--------------------------------------------------------------GAGCTCGATTATATTCAT
GGTTTTCAATAGCGCGCTAAATCTTCGCTCTTAAAAGAAGGTCTTGCGCTAATGAATTTTGGTCCAAATATATGAACAAA
CTTTTTAAATGGCATGCGCTATAGCGTTTACAAGAGGTCCGCCGCTAAAGAGCATAGCCCATTATTTAGAACTATGATTA
TATTGGTGACTTGTGTGTTACTCTTTGCGGGGAAGGGACCCGTCTACGTATAATTGGTGACCGCTCAAGGCTGCCGATCT
CTGTGCAGAAGACCGCACGAGATGCCGAGGAGGCAACAAGGAACAACTCGCACCTCGATCTAGTCCTAGCCATGAGCTAT
AGCGGGCGAATGGACATTGTGCAGGCATGCCGGAATCTCGCCCAGAAGGTGGACGCCAAGCTGCTCAGGCCGGAGGACAT
CGACGAGTCGCTGTTCGCCGACGAGCTACAGACGAGCGAAACATCT---------TGCCCGGACCTGCTCATCAGGACCA
GCGGCGAGCTGAGGCTCAGCAACTTCCTGCTATGGCAGTCAGCTTACTCTGAGCTCTTCTTCACCGACACGCTCTGGCCT
GATTTTGGGGAGGCCCAATATCTCCAAGCCTTGAGGGCCTTCCAGAGCAGAGACAGGCGCTTTGG---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S--S-S---------------S--
---------S--------------S---S------------------------------S----S-------S-------
------SS---------S-SS----------S---S-S--------S--SS-S-S-SSS-SSSSS---------------
---------------------S---------------S-------------------------S----------------
---------SS------S-----S----S----------------------------------------S---S--S---
------------------SS-----------------SSSSSSSS--S--S-----------S----S--S---------
------------------S-------------------------------------------------------------
--------------------------------------------------------------------------------
-------------S-----S---S-S---------------S------------S-SS----------------------
--------------S------------S----SSS-----S---------------S-----------SS------S---
----------------SS-S-SSS-SS---S--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S---S---S----S--S----------
----SSS-----S-S----------------S---SS--------S------------------S---------------
----------------------------------SSSS-SSSSS---S--------------------------------
------------------------------S-----------------S-----------S-------------------
-------------------------------------------S-----------------S------------------
--------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
-------------------------------------------S---------------S---S----------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------S-S---
--------S------------------------------------S------------S---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S---------------------------
-----------------------------------------S--------------------------------------
------------------------------------------S--------------S--S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----S-------------------------------------------------S---SSSSS--SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS---------S---------------S--------------S------------SSS
--S------------S--------S--S---S----SS------------S-----------------------S-----
--------------------------------SS-S----S-----------------------S---------------
--S-------S-------------S--------S-------------------------------------SS-S-----
--S-----------------------------------SS----------------S-----------------------
-------SS------S---S-S-S-S-S-----S----SS-S-----S------S--------------S------S---
SS----------S---S-----------S-S--------------------------------------------S----
-----S--------------S-----------S--------S-------------S-S---------S---SS---SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_247
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------TCGCTCGAAACCC
TAAACCC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>reverse_1980
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------CTCCGCCGCAAATTAATGGC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>forward_1326
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------ACGTGCTCCAGTCAGTGTAC----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>reverse_3074
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------GGTAGGTACATTGGGCGGAG---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
