>input_sequence_58932
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--------------------------------------------------------------ATGGCCGCCCTTCTCCTC
TC------CTCTCGCCTCCCCACCAGCACGGCCACCGCCTCCATC------GCAGCTCCCCGCCCCACACCGTGCTCCCT
CTCCTGTCCCCTCACAGCCGCCAAGGCTTGCCGCCGCG---GGGGCT---GTATCCTCGCCTC---CTCCGCGACGTCAC
CACCGAGGGCCTCCCCGGCCGCGGCCCAGCCTTTCCGTTCCCTGCCCCCCTCCGAGACCACCATCGTCGTCACGGGCGCC
ATGGGCTACATCGGCCGCTTTGTCGTCCGCGAGCTGCTCCGCCGCGGCCACCCCGTCGTCGCCGTCACCCGGCCCCGCAG
CGGCATCCGCGGCAAAAACT-CCCGTGAGGAGGTTGTCTCCGACCTCGCCCCCGCCCGCGTCGTCTTCTCCGATGTCACC
GACCCAGGCGCCCTCCTCGCAGACCTCTCGGG---AT---ATTGTCCCATACACGCCGTGGTCTGCTGCCTCGCCAGCGG
CGGCGGCGGGGTGCAGGACTCGTGGCGCGTGGACTACCGCGCCACGCTCCACACCCTCCAGGCCGCGCGCAGCCTCGGCG
CCGCCCACTTCGTCTTCCTCTCCGCCGTCTGCGTAAAGAATCCGCTCCTCGAGTTCCAGCGCGCCAAGCTCAAGTTCGAG
GACA----------------------------------------------------------AGCTCGCCGCCAAGGCGG
CCCGGGACCCGGCCTTCACCTACAGCGTCGTCCGCCCCACCGCCTTCTTCAAGAGCCAGGGCGGCCAGGTCGAAACCGTC
AAGAAGGGCAATCCCTACGTCATGTTTGGCGACGGAAAGTTCTGCGCTTGCAAGCCTATCTGCGAGGAGGATCTCGCCTC
CTTCATCGCGGATTGCATCTTCGACCAGGAAAAGGCTAACAAGGTGCTTCCAATTGGAGGGACGGGGAAGGCC-C-TCAC
GCCGCTGGACCAAGGGGAGATGCTGTTCCGGCTGCCC-GGGCGTGAACCCAGGTTCATCAAGGTGCCCATTCGGATCATG
GATGGTGTCATCTGGGTGATCGATGGATTGGCCAAGGTGTTCCCGGGGCTGGAGGATGCCGCTGAGTTCGGCAAAATTGG
GAGGTACTAT-GCGTCGGAGAGCACGCTAGTGCTCGATCCCGAGACCGGGGAGTACAGCGACGAGAAGACGCCGAGTTAT
GGCACAGACACGCTCGAGCAGTTCTTCGATTAG-----------------------------------------------
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-------------------------------------------------
>chr4A_1_TraesCS4A01G140700
AAGCAACTGCCATCGTATTGCTATACCACTGCCTCATGCGATTCAAGCAACTCCAAACAATT-GAAACCACCCTGGTCGC
GAGGGATTCGTTTAGAACGCATCATCACAAAACCTCCCTCCTTACCCTCCCCCTCCACCCCTTCAATTCAACTTATA---
-CCCCCGTCGTACCCCAAATCAAAACTATATATCTGCTCGACACACCCCGCCATGGCAACGCTGTGCCCGCGGACGCCAT
GGACAATCTCCGTGCTCGCCGACCTTCGCGCGACGGTGACACACCCTCGCCCTGCCCCGTCACCCAAACCCTAACCTCGC
TGTGCCAAACCAAATCTGGAGTGCAACCGCGTGAAGAGGTGCCAGGATTTACCTTCGCCTATAGCCGACGACTCGCCGCG
CCCATGGACGGACCCCCGCACCGGCGAATCCTGGCCGAATCCACAACCTAGCCCCCGCCCCGCGTCATTGTGAGAGAAAA
ATGGGAGAGGGAGCAGCGCCCGTACGGTTTGAAAATGGGGGAGCGAGGAACGGGAGTTCAAACAAATCGTGTGGGGCACT
ACGTGTGGTTTCCCCTAAAAATTAAGAGTACGGGTCGCACCACTCCACCGCGCGCCTCGCTCTCCCCCTTGTTGCCACCT
GTGTCGGGACGACACGCACGGTCCGTCATGATCGGTCGTGATCTGTGCGATCCGATGGCTATGATGCGTGCGCTCGGAAG
AGCCGATTGGTGCAGCTGCACTAATGACTACTCCCTCCATAAAGAAATATAACAGCAGTTAGATCACCAAAATAGTGATC
TAAACACTTTTATAGTATTAGTTTAGAGAGGGAGTATTTGGGATTAAACAAACTAATCTCACTGCGCACGTTCGCTGGTA
AAAAAACAAAAATAACCCGAAGCGACGAAATTATTCACACGCCCGGATTGCCTCC-CCGCCACCACCACAAACGCTGGCC
GGCTT-----CCCCACACTTGA-----TAGTCGAT------ACCGCATTTCGGTCGAGCACGATGGCCGCCCTTCTCCTC
TC------CTCTCGCCTCCCCACCAGCACGGCCACCGCCTCCATC------GCAGCTCCCCGCCCCACACCGTGCTCCCT
CTCCTGTCCCCTCACAGCCGCCAAGGCTTGCCGCCGCG---GGGGCT---GTATCCTCGCCTC---CTCCGCGACGTCAC
CACCGAGGGCCTCCCCGGCCGCGGCCCAGCCTTTCCGTTCCCTGCCCCCCTCCGAGACCACCATCGTCGTCACGGGCGCC
ATGGGCTACATCGGCCGCTTTGTCGTCCGCGAGCTGCTCCGCCGCGGCCACCCCGTCGTCGCCGTCACCCGGCCCCGCAG
CGGCATCCGCGGCAAAAACT-CCCGTGAGGAGGTTGTCTCCGACCTCGCCCCCGCCCGCGTCGTCTTCTCCGATGTCACC
GACCCAGGCGCCCTCCTCGCAGACCTCTCGGG---AT---ATTGTCCCATACACGCCGTGGTCTGCTGCCTCGCCAGCGG
CGGCGGCGGGGTGCAGGACTCGTGGCGCGTGGACTACCGCGCCACGCTCCACACCCTCCAGGCCGCGCGCAGCCTCGGCG
CCGCCCACTTCGTCTTCCTCTCCGCCGTCTGCGTAAAGAATCCGCTCCTCGAGTTCCAGCGCGCCAAGCTCAAGTTCGAG
GACA----------------------------------------------------------AGCTCGCCGCCAAGGCGG
CCCGGGACCCGGCCTTCACCTACAGCGTCGTCCGCCCCACCGCCTTCTTCAAGAGCCAGGGCGGCCAGGTCGAAACCGTC
AAGAAGGGCAATCCCTACGTCATGTTTGGCGACGGAAAGTTCTGCGCTTGCAAGCCTATCTGCGAGGAGGATCTCGCCTC
CTTCATCGCGGATTGCATCTTCGACCAGGAAAAGGCTAACAAGGTGCTTCCAATTGGAGGGACGGGGAAGGCC-C-TCAC
GCCGCTGGACCAAGGGGAGATGCTGTTCCGGCTGCCC-GGGCGTGAACCCAGGTTCATCAAGGTGCCCATTCGGATCATG
GATGGTGTCATCTGGGTGATCGATGGATTGGCCAAGGTGTTCCCGGGGCTGGAGGATGCCGCTGAGTTCGGCAAAATTGG
GAGGTACTAT-GCGTCGGAGAGCACGCTAGTGCTCGATCCCGAGACCGGGGAGTACAGCGACGAGAAGACGCCGAGTTAT
GGCACAGACACGCTCGAGCAGTTCTTCGATTAGGTGATAAGGGAAGGAATGGCGGGGCAGGAGCTAGGCGAGCAGACCAT
CTTCTATGT------CTTCCGGCTTGCAGATTCAGG--------GCCAAGAGTGG-------------AGGGAGGTAAGT
GAGACTTCTGAGTTTTGACACGTTTGTGTTTCCAACACAATTAGTAGCTCAAATGTAGTACATACAAGGCATTGTCTAAT
TTGAGGGTGGAGAATTGTGCTATATGAAATCATTTACTATAGATCAATTTTTTTGGACACCGCACACGTGTGGTGGTAGC
GAAACCCGCCCACATGACCTATA--ATA-------TACAGACTGTCACCGTATGCATGCATGTGAGATATTTTTTTGGAT
TTTTAATTTTTAAAATATTTTATCTCTTAAATGAAAAATCCGATTGAAAATCTGTTTTCACCATTAAATCTCTCACGATG
AGATCTCCGAAACTAGAGCTCATATCAATATATTTCGACGAATTATTTTTT-GGGTTAAAAGTTGTCATGTCTATTGCAC
ATGAATTGTCATGGTGTTTACACTGAAATTGCCATGATATGTTTCAATTATTTTCTTTTACATTTAAAAGTAAATTTTT-
-ACAC-TTATAAAATGGGGAATTAAGAAACTAGACTTGCCATGAACCATAAACT-AAAATTTCCATGATACATGCATTTA
AAATTGCCATGGTTCATACAAAAAATAATTTTCATGGTTAAAGTATCGGAGTTGACATCATCAAAATACTAAAATTGCCA
TGCTATGCAAACTGAAATTGCCACATGACAACTTTAGTTTAAGCACTATGAAAACTAAAGTGTAAACATCATGTCAATTT
TTGGGTAAAAAAATT--TT-CGTCGAAACATATCAACATGGTGTCTAGTTTTGAAGATCTCGTCGAGACTGATATAATGG
TGAAAACAAATTTTTAATTCG-ATTTTTTAATTAGGAGATAAAATATTTTTAAGTCGAGAACCAAAAAATTTTCTATTGA
TATCATCTGTTCACATGTGGCAAAATGAGTGGTAAAAG-----------
>chr6B_1
AAGAAACTCCCCTCGTATTGCTACGCAACTGTCTCAATAGATTCAAGCAACTACAACAAAAACGAAAACACCCCGGTCAC
GAGGAACTCGTTCATCT-GCATCAGCGCAAACCTCACCCCCTTATCCTCT-CCTTCACCCCTTCAATTCTACCGCCCCCC
GCCCCCGACATACCCCAACTACCCGC----------CTCACCACCCCCCGCCGTGGCAACACCGTGCCCGCGGACAGTAT
CGTCAAC-------------------------------------------------------------------------
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-----------------------------------------------------CCCCGTGCTCGCCCACCTTGCGTGCAA
CGGAGACACACCTATC----------------------------------------------------------------
----------------------------------------GCCCCGCCTCGATCACCCAAACCCTAACCTCGCTGTGCCA
AAACCAAATTTGGAGCGGGACAGCGCGAGGAGATGCCGGTATTACCTCCGCCTGTAGCCGACAGCTCGCCGCGCCCGCGG
ACGGCCTCCCGCGCTGGCGAATCCTCGCCATACCCACAACCGCAGCCCCGCGCGGCT-----------------------
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-------------------------------------------GTCCTTGCGATAGGG----------------------
-----------AAGGGGAGATGGGAGGGA---------------------------------------------------
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---AG-TTCGAAAATAGGGGAGGAAGCGATAGTAGTTTCGAACAAATGTCGTCCGGTGCTGCGGGCGGTTTCGCCT----
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---------------------------------------------------------------------GGAATTAATG-
---------------------------------------------------ACGCGGACCACCACTACAACGCGTGACCC
GGCCTCACACTTGTCCCCGCCTGTGTCAGGACGACCCCCGCGGCCCGTC
>chr4B_914
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--------------------------------------ACGCCCGGATTGCCTCCCCCGCCACGACCACAAACGTTCGCC
GTATCA---------------A-----TACTCGAT------AGCGCATTTTTGTCGAGCACGATGGCCGCCCTTCTCCTC
TC------CTCCCGCTTCCACAAGAGCACGACCATCGCCTCTGCCTCCGCTGCCGCTCCCTGCCCCACACCGCACTTCCT
ATCCTTTCCCCTCACAACCGCCAAGGCTT-CCGCCGCG---GGGAAT---ATATCCTCGCCTC---CTCTGCGGCGTCGC
---------CCTCCCCGGCCACGGCCCAGCCTTTCCGCTCCCTGCCCCCCTCCCAGACCACCATCCTCGTCATCGGCGCC
ACTGGCAACCTCGGTCGCTTCATCGTCTACGAGCTGCTCCGCCGCGGCCACCATGTTGTCGCTGTCGCCCGCCCCCGCAG
CGGCGTCCGCGGCAAAAAAAACCCCTGAGGAGGTTGTCTTCGACCTCGCCCCAGCCAGCGTCATCTTGTTAGATGTAACC
GACCCGGGCGCCCTCCTCGCAGACCTATCGCG---AT---ACGGTCCCGTACACGCTGCGATTTGTTGCCTCGCCAGCCG
CAGCGGTGGGGTGCAGCACTCGTGGCGCGTTGACTGCCACGCCACGCTCCACACCCTCCAGGCCGCGCGCAGCCTTGGCG
CTGCCCACTTCATCCTCCTCTCCGTCGTCTGCCTCTAGAAGCCGCTCCTCGAGTTCCAGCGAGCCAATCTCACGTTCGAG
GACG----------------------------------------------------------AGTTTGCCGCCGAGGCGG
CCTGGGACCCGGCCTTCACCTACAGCGTCATCCACCCCACCACCTTCTTCAAGAGCCTCGGCTGCCAGGTCGAAACCGTC
AAGAA-GGCAATCCCTACGTCATGTTTGGCGACGGCAAGCTTTGTGCTTGCAATCCTATCAGCGAGGAGGATCTCGCCTC
CTTCACCGCGGATTGCATCTTCGACCAGGAAAAGGCTAACAAGGTTCTTCCAATTGGAGGGCCGGGGAAGGCC-C-TCAC
GCCGCTGGAGCAAGGGGAGATGTTGTTCCGGCTGCTC-GGGTGCGAACCTAGGTTCATCAAGGTGCCCATTTAGATCATG
GATGGTGTCATCTAGGTGCTCGATGGATTGGCCAAGGTGTTCCCGGGGCTGGAGGATGTCGCCGAGTTCGGCAAAATTGG
GAGGTACTATTGCGTCGGAGAGCATGCTAGTGCTCGATCCCGAGACCGGGGAGTACAGCGACAAGAAGACGCCGAGCTAT
GGCACAGACATGCTCGAGCACTTCTTCGATAAGGTGATAAGGGAAGGAATGGCGGGGCAGGAGCTAGGCGAGTAGACCAT
CTTCTAG------GCCTTCCAGCTTGTAAATTCAGG--------GCCAAGAGTGT-------------AGGGAGGTAAGT
GAGACTTGTGAGTTTTGACACATTTGTGTTTGCAACACATTA--------------------------------------
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-------------------------------------------------
>chr6D_918
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------------------------------------------CCGGATTGCCTCCCCTGCCACCACCACAAACGCTCGCC
GGCAT-----CC-TACACACGA-----TAGTCGAT------ACCGCATTTCCGTCGAGCACGATGGCCGCCCTTCTCCTC
TCAGTCTCCTCCCGCC-CCCCAAGAGCACGGCCATCGCCTCCGCC------GCCGCTCCCCGCCCCACACCGCGCTTCCT
CTCCTTTCCTCTCACAACCGACAAGGCTTGCCGCCGCG---GGGGAC---GTATCCTCACCTC---CTCTGCGATGTCGC
---------CCTCCCCGGCCGCGGCCCAGCCTTTCCGCTCCTTGCCCCCCTCTAAGACCACCGTCCTCGTCACCGACACC
ACGGGCTACATCGGCTGCTTCATCGTCCGCGAGCTGCTTCGCTGCGGCCACCGCGTTGTCGCCGTTGCCCGGCCCCGCAG
CGGCGTCCGCGGCAAAAACT-CCCCTGAGGAGGCTGTCTCCGACCTTGCCCCCGCCCGCGTCGTCTTCTCCGATGTCACC
GACCCGGGCGCCCTCCTCGCAGACCTCTCGGGGTCGGGATACCGTCCCGTATACGCCGTGGTCTGCTACCTCGCCAGCCG
CGATGGCGGGGTGCAGGACTCGTGGCGCGTCGACTACCGCGCCACGCTCCACACTCTCCAGGCCGCACGCAGCCTCGACG
CCGCCCACTTCGTCCTCCTCTCCGCCGTCTGCGTCCATAAGCCACTCCTCGAGTTCCAGCGCGCCAAGCTCAAGTTCGAG
GGCG----------------------------------------------------------AGCTCGCCGCCGAGGCGG
CCCGGGACCCGACCTTCACCTACAGTGTCGTCCGCCCCACCGCCTTCTTCAAGAGCCTCAGCGGCCAGGTCGAAACCGTC
AAGAAGGGCAATCCCTACGTCATGTTTGGCGACGGCAAGCTCTGCGCTTGCAAGCCTATCAGCGAGGAGGATCTCGCCTC
CTTCATCGCGGATTGCATCTTCGACCAGGAAAAGGCTAACAAGTTTCTTCCAATTGGAGGACCGGGGAAGGCCCC-TCAC
GCCGCTGGAGCAAGGGGAGATGTTGTTCCGGCTGCTCGGGGCGAGAACCCAGGTTCATCAAGGTGCCCATTCAGATCATG
GATGGTCTCATCTGGGTGCTCGATGGATTGGCCAAGGTGTTCCCGGGGCTGGAGGATGCCGTCGAGTTCGGCAAAATTGG
GAGGTACTA-TGCGTCGGAGAGCATGCTAGTGCTCGATCCTAAGACCGGGGAGTAGAACGGCGAGAAGACATCGAGCTAT
GGCAAAGACACGCTCGAGAAGTTCTTCGATAAGGTG--------------------------------------------
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>chr6D_931
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--------------------------------------------------------CCACCACCACCACAAACGCTCGCC
GGCTT-----CCCCACACTCGACTCGATAGTGGAGTGGATAACCGCATCTCCGTCGAGCACCATGGCCGCCCTTCTCCTC
CCAGTCTCCTCCCGCCTCCCCAAGAGCACGGCCATCGCCTCCGCCT------CCGCTCCCCGCCCCACACCGCGCTTCCT
CTCCTTCCCCCTCACAACCGCCAAGGCTTGCCGCCGCCGCAGGGGAT---GTATCCTCGCCTC---CTCTGC--------
----CCCGG---CCGCGGCCGAGGCCCAGCCTTTCCGCTCCCTGGCCCCCTCCGAGACCACCGTCCTCGTCACCGGCGCC
ACGGGCTACATCGGCCGCTTCGTCGTCCGCGAGCTGCTCCGCCGCGGCCACCGCGTCGTCGCCGTCGCCCGGCCCCGCAG
CGGCGTCCGCGGCAAGAACT-CCCCTGAGGAGGTTGTCTCCGACCTCGCCCCCGCCCGCGTCGTCTTCTCCGACGTCACC
GACCCGGGCGCCCTCCTCGCAGACCTCTCGGGGTCGGGACACGGCCCCGTGCACGCCGCGGTCTGCTGCCTCGCCAGCCG
CGGCGGCGGGGTGCAGGACTCGTGGCGCGTCGACTACCGCGCCACACTCCACACCCTCCAGGCCGCGCGCAGCCTCGGCG
CCGCCCACTTCGTCCTCCTCTCCGCCGTCTGCGTCCAGAAGCCGCTCCTCGAGTTCCAGCGCGCCAAGCTCAAGTTCGAG
GGCG----------------------------------------------------------AGCTCGCCGCCGAGGCGG
CCCGGGACCCGGCCTTCACCTACAGCGTCGTCCGCCCCACCGCCTTCTTCAAGAGCCTCGGCGGCCAGGTCGAGGCCGTC
AAGAAGGGCAACCCCTACGTCATGTTTGGCGACGGCAAGCTCTGCGCCTGCAAGCCCATCAGCGAGGAGGATCTCGCCTC
CTTCATCGCGGACTGCATCTCCGACCAGGAGAAGGCTAACAAGGTTCTTCCAATTGGAGGGCCGGGGAAGGCC-C-TCAC
GCCGCTGGAGCAAGGGGAGATGCTGTTCCGGCTGCTC-GGGCGCGAACCCAGGTTCCTCAGGGTGCCCATTCAGATCATG
GATGGTGCCATCTGGGTGCTCGACGGACTGGCCAAGGTGTTCCCGGGGCTGGAGGATGCCGCCGAGTTCGGCAAAATTGG
GAGGTACTA-TGCGTCGGAGAGCATGCTAGTGCTGGATCCCGAGACCGGGGAGTACAGCGACGACAAGACGCCGAGCTAT
GGCAAAGACACGCTCGAGCACTTCTTCGAGAAAGTGATAAGGGAAGGAATGGCGGGGCAGGAGCTAGGCGAACAGACCAT
CTTCTAGCTCTAGGCCTTCCAGCTTGTAAATTCAGG--------TCCAAGAGTGT-------------AGGGAGGTAAGT
GAGGCTTCTGAGTTTTGACTCGTTTGTGTTTCCAACACAAT---------------------------------------
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>chr6A_931
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--------------------------------------------------------CCGCCACCACCACAAACGCTCGCT
CGCCGGCTTCCC-CACACTCGA-----TAGTGGAGGGGATAACCGCATCTCCGTCGAGCACGATGGCCGCCCTTCTCCTC
CCAGTCTCCTCCCGCCTCCCCAAGAGCACGGCCAT------CGCCT------CCGC---CCGCCCCACACCGCGCTTCCT
CTCCTTCCCCCTCACAACCGCCAAGCCTTGCCGCCGCCGCGGGGGATGTAGTATCCTCGCCTC---CTCTGCGACGTCGC
CCTCCCCGG---TCGCGGCCGAGGCCCAGCCTTTCCGCTCCCTGCCCCCCTCCGAGACCACCGTCCTCGTCACCGGCGCC
ACGGGCTACATCGGCCGCTTCGTCGTCCGCGAGCTGCTCCGCCGCGGCCACCGCGTCGTCGCCGTCGCCCGGCCGCGCAG
CGGCGTCCGCGGCAAGAACT-CCCCCGAGGAGGTCGTCTCCGACCTCGCCCCCGCCCGCGTCGTCTTCTCCGACGTCACC
GACCCGGGCGCCCTCCTCGCGGACCTCTCGGGGTCGGGACACGGCCCCGTGCACGCCGCGGTCTGCTGCCTCGCCAGCCG
CGGCGGCGGGGTGCAGGACTCGTGGCGCGTCGACTACCGCGCCACGCTCCACACCCTCCAGGCCGCGCGCAGCCTCGGCG
CCGCCCACTTCGTGCTCCTCTCCGCCGTCTGCGTCCAGAAGCCGCTGCTCGAGTTCCAGCGCGCCAAGCTCAGGTTCGAG
GGCG----------------------------------------------------------AGCTTGCCGCCGAGGCGG
CCCGGGACCCGGCCTTCACCTACAGCGTCGTCCGCCCCACCGCCTTCTTCAAGAGCCTCGGCGGCCAGGTCGAGGCCGTC
AAGAAGGGCAACCCCTACGTCATGTTCGGCGACGGCAAGCTCTGCGCGTGCAAGCCCATCAGCGAGGAGGACCTCGCCTC
CTTTATCGCGGACTGCATCTTCGACCGGGAGAAGGCTAACAAGGTTCTCCCAATTGGAGGGCCGGGGAAGGCC-C-TCAC
GCCGCTGGAGCAAGGGGAGATGCTGTTCCGGCTGCTC-GGGCGCGAACCCAGGTTCATCAGGGTGCCCATTCAGATCATG
GATGGTCTCATCTGGGTGCTCGATGGACTAGCTAAGGTTTTCCCGGGGCTGGAGGATGCCGCCGAGTTCGGCAAGATTGG
GAGGTACTA-TGCGTCGGAGAGCATGCTAGTGCTGGATCCCGAGACCGGGGAGTACAGCGACGAGAAGACGCCGAGCTAT
GGCAAAGACACGCTCGAGCACTTCTTCGAGAAGGTGATAAGGGAAGGAATGGCGGGGCAGGAGCTAGGCGAGCAGACCAT
CTTCTAGTTCTAGGCCTTCCAGCTTGTAAATTCTTTTTTCTTTTGCCAAGAGTGTAGGGAGGTAAGTGAG----------
---ACTTCTGAGTTTTGACACGTTTGTGTTTCTAACACAAT---------------------------------------
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>chr6B_967
CTCGATAC------------------------------------------------------------------------
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-----------------------------------TGGATAACCACATCTCCGTCGAGCACCATGGCCGCCCTTCTCCTC
CCAGTCTCCTCCCGCCTCCCCAAGAGCACGGCCAT------CGCCT------CCGCTCCCCGCCCCACACCGCGCTTCAT
CTCCTTCCCCCTCACAACCGCCAAGGCCTGCCGCCGCCGCGGGGGATGTAGTATCCTCGCCTCCTCCTCTGCGATGCCGC
---------CCTCCCCGGCCGCGGCCCAGCCTTTCCGCTCCCTGCCCCCCTCCGAGACCACCGTCCTCGTCACCGGCGCC
ACGGGCTACATCGGCCGCTTCGTCGTCCGCGAGCTGCTCCGCCGCGGCCACCGCGTCGTCGCCGTCGCCCGCCCGCGCAG
CGGCGTCCGCGGCAAGAACT-CCCCCGACGAGGTCGTCTCCGACCTCGCCCCCGCCCGCGTCGTCTTCTCCGACGTCACC
GACCCGGCCGCCCTCCTCGCGGACCTCTCGCCGACAT---ACGGCCCCGTGCACGCCGCGGTCTGCTGCCTCGCCAGCCG
CGGCGGCGGGGTGCGGGACTCGTGGCGCGTCGACTACCGCGCCACGCTCCACACCCTGCAGGCCGCGCGCAGCCTCGGCG
CCGCCCACTTCGTGCTCCTCTCCGCCGTCTGCGTCCAGAGGCCGCTCCTCGAGTTCCAGCGCGCCAAGCTCAGGTTCGAG
GCCG----------------------------------------------------------AGCTCGCCGCCGAGGCGG
CCCGGGACCCGGGCTTCACCTACAGCGTCGTCCGCCCCACCGCCTTCTTCAAGAGCCTCGGCGGCCAGGTCGAGGCCGTC
AAGAAGGGCAACCCCTACGTCATGTTCGGCGACGGCAAGCTCTGCGCCTGCAAGCCCATCAGCGAGGAGGACCTCGCCTC
CTTCATCGCGGACTGCATCTTCGACCGGGAGAAGGCCAACAAGGTGCTTCCGATCGGAGGGCCGGGGAAGGCC-C-TCAC
GCCGCTGGAGCAAGGGGAGATGCTGTTCCGGCTGCTC-GGGCGCGAGCCCAGGTTCATCAGGGTGCCCATCCAGATCATG
GATGGTGTCATCTGGGTGCTCGATGGACTGGCCAAGGTGTTCCCGGGGCTCGAGGATGCCGCCGAGTTCGGCAAGATTGG
GAGGTACTA-CGCGTCGGAGAGCATGCTGGTGCTGGATCCCGAGACCGGGGAGTACAGCGACGAGAAGACGCCGAGCTAT
GGCAAGGACACGCTCGAGCACTTCTTCGAGAAGGTGATAAGGGAAGGAATGGCCGGGCAGGAGCTAGGCGAGCAGACCAT
CTTCTAGTTCTAGGCCTTCCAGCTTGTAAATTATCC-TTTTTTTGCCAAGAGTGTAGTGAGGTAAGTGAG----------
---ACTTATAAGTTTTGACACGTTTGTGTTTCCAACCCAA----------------------------------------
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>chr6B_1498
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---------------------------CGTCGACCACCACGCCACGCTCCACACCCTCCAGGCCGCACGCAGCCTCGGCG
CTGCCCAATTCGTCCTCCTCTCCGCCGTCTGCGTCCAGAAGCCGCTTGTCGAGTTCCAACGCGCAAAGCTCAAGTTTGAG
GGAGGC-------------------------------------------------------------------------G
CCCGGGACCCGGCCTTCACCTACAGCATCGTCCGCCCCACCGCCTTCTTCAAGAGCCTCGGCGGCCAGGTCGAAACTGTC
AAGAAGGGCAATCCATACGTCATGTTTGGCGACGGCGAGTTCTGCTCTTGCAAGCCTATCAGCGAGGAGGATCTCGCCTC
CTTCATCGCGTATTGCATCTTTGACAAGGAAAAGGCTAACAAGCGTCTTCCAATTGGAGGGCCGAGGAAGGCC-CCTCAC
GCCGCTGGAGCAAGGGGAGATGTTGTTCCGGCTGCTCGGGGCGCGAACCCAGGTTCATCAAGGTGTCCATTCAGATCATG
GATGGTGTCATCTGGGTGCTCGATGGATTGGACAAGGTGTTCCCCGGGCTGGAGGATGCCGCCGAGTTCGGCAAAATTGG
GAGGTACTA-TGCGTCGAAGAGCATGCTAGTGCTCGATCCTGAGACCGGGGAGTACAACGACGAGAAGACGCCGAGCTAT
GGCAAAGACACACTCGAGCAGTTCTTCGATAAGGTGATAAGGGAAGGAATGGTGGGGCATGAGCTAGGCGAGCAGACCAT
C------TTCTAGGCCTTCCAGCTTGTAAATTCAGG--------GCCAAGAGTGT-------------AG----------
---ACTTCTGAGTTTTGACACGTTTGTGTTTCCAACACAATT--------------------------------------
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>chr4D_2404
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--------------------------------------------------------------CACACGTGTGGTGGGAGC
TAAACCCGCCCACACGCCCTACAAC--ACACAGACTGCGCCACGTCATCGCATGCATGCATGTGAGA-ATCTTTTTGGAT
TTTCAGTTTTTAAAATGTTTTATCTCTTAAATGAAAAGTCTGATTGAAGATCCGTTTTCACCATTAAATCCCTCGCGACG
AGATCTTCGAAACTAGATCTCATATCAATATATTTCGATGAATT-TTTTTA-GGGTTAAAAGTTGCCATGTCTATTACAC
ATGATTTGTCATGGTGTTTACATTGAAGTTGCCATGATATGTTTCAGCTATTTTCTTCTACATTTAAAAGTAATTTTTT-
GACAT-TTATAAAACGGGGAATTAAGAAACTAGACTTGCCTTGAACCATAAACT-AAAATTGCCATGATACATGCATTTA
AAATTGCCATGGTTCATACAAAAAATAATTTTCATGGTCAAAG-ACCGGAGTTGCCATCATCAAAATACTAAAATTGCCA
TGCTCTACAAACAGAAATTGCCACATGGCAACTTTAGTTTAAGCACTATGGCAACTACAGTGTAAACATTATGGCAACTT
TTGGGCAAAAAAA-A--TTTCGTCGAAACATATCAACATGGGGTCTAGTTTTGAAGATCTTGTCGAGACGGATTTAATGG
TGAAAACGGATTTTTAATTCG-ATTTTTAAATTAGG-GATAAAACATTTTTAAGCCGGAAACCAAAAAGATTCCTGCTGA
TATCATCTGTTCACATGTGGCAAAATGAGTGGTAAA-------------
>chr4D_2404
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--------------------------------------------------------------CACACGTGTGGTCTGAGC
CAAACCCGCCCACACGCCCTATAGC--ACATAGACTACGCCATGTCACCGCATGCATGCATGTGGAA-TTCTTTTTGGAT
TTTCTGTTTTTAAAATATTTTATCTCTTAAATGAAAAATCTGATTGAAGATCCGTTTTCACCATTAAATCACCCGCGAGG
AGATCTTCGAAACTAGATCTCATATCAATATATTTCGACGAAAT-TTTTTT-TGGTTAAAAGTTGTCGTGTCTATTGCAC
ATGAATTGCCATGATGTTTACACTGAAGTTGCCATGATATGTTTCAGCTATTTTCGTCTACATTTAAAAGTAAA-TTTT-
GACATGTTCTAAAACCGGGAATTAAGAAACTAGACTTGCCATGCACCATGAATTAAA-ATTGCCATGATACATGCACTTA
AAATTGCCATGGTTCATACAAAAAATA-TTTTCATGGTCAAAGTACTGGAATTGCCATCATCGAAAAACTAAAATTGCCA
TGATCTACAAACTAAAATTGCCACATGGCAACTTTAGTTTAAGCACTATGGCAGCTATAGTGTAAACATCATGGCAACTT
TTGGGCAAAAAAA-A--TT-CGTCGAAACATATCGACATGGCGTCTAGTTTTGAAGATCTCGTCGAGACGGATTTAATGG
TGAAAACAGATTTTTAATTCG-C-TTTTTAATTAGGAGATAAAACATTTTTAAGCTGAAAACCAAAAAGATTTCTGCTGA
TTTCATTTGTTCATACGTGGCAAAATGAGTGGT----------------
>chr3D_2404
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--------------------------------------------------------------CACACGTGTGGTGTGAGC
CAAACCCGCCCACACACCCTATAACACACG--AACTGCGCCACGTCACCGCATGCATGCATGTGAGA-ATTTTTTTGGAT
TTTCAGTTTTTAAAATGTTTTATCTCTTAAATGAAAAATCCGATTGAAGATCCGTTTTCACCATTAAATCCCTCGCGACG
AGATCTTCGAAACTAGATCTCATATCAATATATTTCGACGAAAT-TTTTTG-AAGTCAAAAGTTGCCATGTCTATTGCAC
ATGAATTGCCATGATGTTTACACTGAAGTTGCCATGATATGTTTCAGCTATTTTCTTCTACATTTAAAAGTAAA-TTTT-
GACAT-TTATAAAATAGGGAATTAAGAAACTAGACTTTCCATGAACCATAAACT-AAAATTGCCATGACACATGCACTTA
AAATTGCCATGGTTCATACAAAAAATAATTTTTATGGTCAAAGTATTGGAGTTGCCATCATCGAAGTACTAAAATTGTCA
TGCTCTACAAATTGAAATTGCCACATGGCAACTTTAGTTTAAGCACTATGGCAACTACAGTGTAAACATCATGGCAACTT
TTGGGCAAAAAAA-AATC--CGTCGAAACATATCAACATGCGGTCTAGTTTTGAAGATCTCGTCGAGACGGATTTAATGG
TGAAAACGGATTTTTAATTCA-ATTTTTTAATTAGGAGATAAAATATTTTTAAGCCAAAAACCCAAAAGATTCCTGCTGA
TGTCATATGTTCACATGTGGTAAAATGAGTGGTAAA-------------
>chr3A_2404
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--------------------------------------------------------------CACACATGTGGTGGGAGT
GAAACCCGCCCACACGCCCTATA--GTACATAGACAGCGCCATGTCACTGCATGCATGCATGTGGGA-ATCGTTTTGGAT
TTCCTATTTTTAAAATGTTTTATATCTTAAATAAAAAATCCGATTGAAGATCCGTTTTCACCATTAAATCTCTTGTGATG
AGATCTTCGAAACTAGATCTCACATCATTATATTTTGATGAATT-TTTTGGGGGGTTAAAAGTTGCCATGTCTATTGCAC
ATGAATTGCCATGGTGTTTACACTGAAGTTGCCATGATATATTTTAACTATTTTCTTCTACATTTAAAAGTAAA-TTTT-
GACAT-TTATAAAACAGGAAATTAAGAAACTAGACTTGCCATGAACCATAAACT-AATATCGCCATGATACATGCACTTA
AAATTGCCATGGTTCATACAAAAAATAGTTTTCATGGTCAAAGTATTGCAGTTGCCATCATCAAAATACTAAAATTGCCA
TGCTCTACAAACTGAAATTGCCACATGGCAACTTTAGTTTAAGCACTATGGCAGCTACAGTGTAAACATCATGGCAACTT
CTGGGCAAAAAAA-A--TT-CGTCGAAACATATCAACATGGGGTCTAGTTTTCAAGATCTCGTCGAGACGGATTTAATGG
TGAAAACAGATTTTTAATTCGAC-TTTTTAATTAGGAGATAAAACATTTTTAAGCCGAAAACCAAAAAGATTCTTGCTGA
TGTCATATGTTCACATGTGGCAAAATGAGTGGTAAA-------------
>chr3A_2404
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--------------------------------------------------------------CACACGTGTGGTGGGAGC
CAAACCCGCCCACACACCCTATAGTATACA--GACTACACCATGTCACC----GCATGCATGTGGAA-ATCTTTTTGGAT
TTTTTGTTTTTAAAATATTTTATCTCTTAAATGAAAAATCCGATTGAAGATCTGTTTTCACCATTAAATCCCTCGCGACG
AGATCTTCGAAACTGGATCTCGTATCAATATATTTCGACGAATT-TTTTTT--GGTTAAAAGTTGTCGTGTCTATTGCAC
ATGAATTGCCATGATGTTTACACTAAAGTTGTCATGATATATTTCAGCTATTTTTTTCTACATTTAAAAGTAAA-TTTT-
GACATATTATAAAACATGGAATTAAGAAACTAGACTTGCCATGCACCATAAATTAAA-ATTGCCATGATACATGCACTTA
AAATTGCCATGGTTCATACAAAAAAATATTTTCATGGTCAAAGTACTGGAATTGTCATCATCGGAAAACT-AAATTGCCA
TTATCTACAAACTAAAATTGCCACATGGCAACTTTAGTTTAAGCACTATGGCAACTACAGTGTAAACATCATGGCAACTT
TTGAGCAAAAAAA-ATTTT-CGTCGAAACATATCAACATGGGGTCTAGTTTTAAAGATCTCGTCGAGACGAATTTAATGG
TGAAAACAGATATTTAATTTG-CTTTTTTAATTAGGAGATAAAACATTTTTAAGCCAGAAATTAAAAAATTTTCTACTGA
TGTCATCTGTTCATATATGGCAAAATGAGTG------------------
>chr5D_2404
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--------------------------------------------------------------CACATGTGTGGTGTGAGC
CAAATTCGTCCACACGCTCTATA--ATACA--CACTGCATCACGTCACTGCATGCATGCATGTGGC--ATCTTTTTGGAT
TTTCAGTTTTTAAAATGTTTTATCTCTTAAATGAAAAATCCGATTGAAGATCCGTTTTCACCATTAAATCCCTCGCGACG
AGATCTTCGAAACTAAATCTCATATCAATATATTTTGACGAATT-TTTTTTGGGGTTAAAAGTTGCCATGTCTATTGCAC
ATGAATTGGCATGAAGTTTACACTGAAGTTGCCATGATATGTTTCAACTATTTTCTTCTACATTTAAAAGTAAA-TTTG-
GACATATTATAAAACGGGAAATTACGAAACTAGACTTGCCATGAACCATAAACT-AA-ATTGCCATGATACATGCACTTA
AAATTACCATGGTTCATACAAAAAATAATGTTCATGGTCAAT-TACTGGAATTGCCATAATCAAAAAACTAAAATTGCCA
TGCTCTACAAACTAAAATTGCCACATGACAACTTTAGTTTAAGCACTATGGCAACTACAGTGTAAACATCATGGCAATTT
TTTGG-TAAAAAA-AATTT-CGTCGAAACATATCAACATGGGGTCTAGTTTTGAAGATTTCGTCGAGACGAATTTAATGG
TGAAAACAAATTTTTAATTTG-ATTTTTTAATTAGGAGATAAAACTTTTTTAAGCCGAAAACCAAAAAAATTCCTGCTGA
TGTCATATATTCATACGTGGCAAAATGAGTGGT----------------
>chr5D_2404
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--------------------------------------------------------------CACACGTGTGGTGGGAGC
CAAACCCGCCCACACGCCCTATAACACACA--GACTACACCATGTCATTGCATGCATGCTTTTGGAA-ATCTTTTTGGAT
TTTCAGTTTTTAAAATGTTTTATCTCTTAAATGAAAAATCAAATTGAAGATCCGTTTTCACCATTAAATCCCTCGCGACG
AGATCTTCGAAACTAGATCTCATATCGATATATTTCGGCGAA---TTTTTTTTGGTTAAAAGTTGCCATGTCTATTGCAC
ATGAATTGCCATGATATTTACACTGAAGTTGCCATGATATGTTTCAGCTATTTTCTTTTACATTTAAAAGTAAA-TTTT-
AACATATTATAAAACGGGGAATTAAGAAACTAGACTTGCCAAGCACCATAAACTAAA-ATTGCCATGATACATGCACTTA
AAATTGCCATGGTTCATACAAAAAAATATTTTCATGGTCAAAGTACTGGAATTGCCATCATCAAAAAACTAAAATTGCCA
TGATCTACAAACTAAAATTGCCACATGGCAACTTTAGTTTAAGCACTATGGCAATTACAGTGTAAACATCATGGCAACTT
CTGGGCAAAAAAA-AATTT-CATCGAAACAAATCAACATGGGGTCTAGTTTTGAAGATCTCGTCGAGACGGATTTCATGG
TGAAAACGGATTTTTAATTCG-CTTTTTTAATTAGGAGATAAAACATTTTTAAGCTGAAAACCAAAAAGATTTCTGCTGA
TGTCATCTATTCATAAGTGGCAAAATGAGTGGT----------------
>chr2D_2404
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--------------------------------------------------------------CACACGTGTGGTGGGAGG
CAAACCCACCCACACGTCCTATAACATAAA--GACTACGTCATGTCACCATATGCATGCATGTGGAT-TTTTTTTTGGAT
TTTTAGTTTTAAAAATGTTTTATCTTTTAAATGAAAAATCCGATTGAAGATCTGTTTTCACCATTAAATCCCTCGCGACG
AGATCTTCGAAACTAGATCTCATATCAATATATTTTGACGAAAT-TTTTTTTGGGTTAAAAGTTGCCATGTCTATTGCAC
ATGAAGTGCCATGATATTTACACTGAAATTGCCATGATATGTTTCAGCTATTTTCTTCTATATTTAAAAGTAAA-TTTT-
GACATATTATAAAACAGGGAATTAAGAAACTAGACTTGCCATGCACAATAAACTAAA-ATTGTCATGATACATGCACTTA
AAATTGCCATGGTTCATACAAAAAAATATTTTGATGGTCAAAATACTGGAATTGCCATCATCAAAAAACTAAAATTGCCA
TGATCTATAAATTAAAATTGCCACATGGCAATTTTAGTTTAAGCACTATGGCAAATACAGTGTAAACATCATGGCAACTT
TTGGG-AAAAAAA-T--TT-CGTCCAAACATATCAACATGGG-TCTACTTTCGAAGATCTCGTCGAGACGGATTTAATGG
TGAAAACAGATTTTTAATTC--ATTTTTTGATTAGGAGATAAAATATTTTTAAGCCGAAAACCAAAAAGATTTCTACTTA
TGTCATCTGTTCATACGTGGCAAAATGAGTGGT----------------
>chr3D_2457
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--------------------------------------------TCATCGCATGCATGCATGTGAGA-ATCTTTTTGGAT
TTTTAGTTTTTAAAATGTTTTATCTCTTAAATGAAAAATCCGATTGAAAATCCGTTTTCACCATTAAATCCCTCGCGACG
AGATCTTCAAAACTAGATCTCATATCAATATATTTTGACGAATT-TTTTTA-GGGTTAAAAGTTGCCATGTCTATTACAC
ATGAATTGCCATGGTGTTTACACTGAAGTTGCCATGATATGTTTCAGA---TTTCTTCTACATTTAAAAGTAAA-ATTTT
GACAT-TTATAAAATGGGGAATTAAGAAACTAGACTTGCCTTGAACCATAAACTAAA-ATTTCCATGATACATGCACTTA
AAATTGCCATGGTTTATACAAAAAATAATTTTCATGGTCAAAG-ACTGGAGTTGCCATCATGAAAATACTAAAATTGCCA
TGCTCTACAAACTGAAATTGCCACATGGCAACTTTAGTTTAAGCACTATGGCAACTACAGTGTAAACATCATGGCAACTT
TTGGGCAAAAAAA-A--TT-CGTCGAAACATATCAACATGGGGTCTAGTTTTGAAGATCTTGTCGAGACGGATTTAATGG
TGAAAACGGAATTTTAATTTG-ATTTTTAAATTAGGAAATAAAACATTTTTAAGCCGAAAACCAAAAAGATTCCTGCTGA
TGTCATCTGTTCACATA--GCAAAATGAGTGGTAAA-------------
>SNPs
---S----S--S-----------SS-S----S----SSS-------------S---SS--SS-----S-----S----S-
----S-S-----S-SSSS------S-S----S-SSS--S-----S----SS---S--------------S--SSSSS---
-------S-S--------S-SSSSS-SSSSSSSSSS---SS---S-------S-------S-S------------SSS--
S-S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------S---
-------------------S-------------------------------S----------------------------
-----------S----------SS----------S-------SS---------S------------------S---S---
-----S----------S----------------------------S-----------------------S--------S-
-SS-SSS------------------------------S---------------------------S-------S------
-S------------------S-------------------------------S-------------S-------------
----S-------------------S-------------------------------------------------------
-----S-----------------------------------SS-----S-----------------------------S-
------------------------------S-------------------------------------------------
--------------S-------------------SS----S---------------------------------------
---S---------------------------------------------------------------------S------
---------------------------------------------------------SS---------------------
-----------------------------------S------------------------S-------------------
-------------------------------------------------------------S------------------
---------S-------------------------S-------S----------------------------S-------
------------------S-------------------------------------------S-----------------
------------------------S---------------------------------------------------S---
------------------------------S-------------------------------------------------
------SS------------S-----S-S-------------------------S-------------------------
------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S---
--------------S-S----------------------SSS-------------------------S------------
--------------------------------------------------------------------------S-----
------S----------S--------------------------S-----------------------------------
-----------------------------------------------S--------------------------------
----S---------------------------------------------------------------------------
--------------------------------------S---------------S-------------------------
----S-S-------------------------------------------SS-----S---------------S------
-----S-------S---------------------------S---------------------------S---S------
------------------------------------------------------S---S-----------------S---
------------------------------------SS-----------
>forward_698
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--------------------------------------TGATCTGTGCGATCCGATGG----------------------
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>reverse_2601
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----------------------------------------ACTGTCACCGTATGCATGCA--------------------
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-------------------------------------------------
