>input_sequence_58930
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-------------ATGGGGCCGGCACCCTGCACCAATGGCCTCCTCATCGTCC---TCCTCCTCGTGCTCGCCGTGGCCG
ACTTCGGGTCGGGGCAGCAGAACC---------CGCCTCCGCCAGGGGCGTACTACACGGCGAAGTTCAGCCCATCCAGG
GCCACCGTCATCATCGTCCTAATCGTCATCCTCGTCGCCTTCTTGTTCTTGTTCTTCCTCTGCCTCTTCTTGGTCTGCAT
CCACAACTGCC--------ATGGCGACACCTCCTACTCGGCCACTAGACTCCCGATAGGCGCCC---CCGCGGCGCGCCC
GCGACGACAGCAGCGCGGGCTCGACCCGGCCGTC---CTTGAGACCTTCCCGACCATGGCGTACGCCGACGTGAAGGAGC
ACAAGGCCGTCAAGGGCGCGCTGGAGTGCGCCGTGTGCCTCAGCGAGTTCGACGACGACGAGACGCTCCGCCTCCTGCCC
AAGTGCTCCCACG-------------------------------------------------------------------
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--------TCTTCCACCCGGACTGCATCGACACCTGGCTTGCCTCCCACATCACATGCCCGGTCTGCCGCGCGAACCTCG
TCCCCGACG------ACACCGACTTTCCGGGCACCGGCGGT---------GAGCTGTCGAGTGTCCATCCCGCTTCGCGG
CCGCCGCAAGAGGTGCCACCGTCAGCTTCTGCAACGGAGGCAGCTCCCACCGTCGTCATCGACGCGGAGGAGAGTGAGGA
CGAGAGGATCATCCGGGAAGATACGGACGAACTGGCGCGCATCGGCAGCCTGAAACGCGCGCTGCGCTCCAAGTCCAGCC
GAGCGCCCACGCACTTCTCGCGTTCGCACTCGACGGGGCACTCGCTCGCTGCGCGAGCCAGCAGCTGCACCGGCACGGGC
GCCGGCGTCGAGAGGTTCACGCTGCGGCTACCCGAGCCGGAGCACGCG---------------GGCAGACTACGGCGCAT
GAAGAGCCTCGCCGTGTTCACTGCCGGCCGCCAGGGCAGCACGTACCGTTCCCTCCGACTATGCG---------GCGACG
GCAGCAGCCGCAGCGGGACGAGAGTCCGGCTCGGCCAGTCAGGCCGGTGGCCATCTTTCTTGTCGCGGACTTTCTCCGCG
GCGTGGGGGGCGAGGTCCACCCAGAGTGCCGAGTTGGACGGGTCGAGCAAGGGCGGGAAG----------CCGGCGGCAA
GTCAGTGGAGTGCAAAGACCACTAGACCAGGCGTGCGCTGCTG-A-----------------------------------
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>chr3D_1_TraesCS3D01G495500
AGTGAAGTCAGCATCGCAGGGAGCGCTGGGAAATGGAACGGAAAGAGCTGGGGGTCGTGTTAGGTAGTTAAGGAGGCCGA
AAGGAGCACAATTAATGCACTAAATAATCTCAAGGCTGCGACGGGCAAAGCAGCCGGCCACGTTCTCTCGCCTACTAGCT
AGATTCTATTCCCTGCGCGACCCACTACACTTA-----CCATGAACCTGTCTATCTCCGCATGTTTTCAAACATTCATTA
ATCCCCTTCGAAGCGACTTCCTGATTTT----------------------------------------------------
----------------------------------------------------TATTTGTTTAACACCAGGATCCACATCT
AACATAAAAAGT-------------------------ATAACAACTA---------------------------------
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--------------------------------------------------TACCTTATATTGAAAAGATACCGAAGTTTG
AGCGGGTCTATTCACGT----TATCTCACTGTTTTTGTTTCATGCACTTGTAATCTCTTATCTCTGCTGGTTTTATGTAC
TTGTACTTCATACATCTATTTCGGTATAAACATGCTTTTATGGAGAAGTCGGCACTTTTTTTAATTTACTGGATCAAAAA
TTTAATAAAATATATAAACAATCATGTGGCTTGTGGTAGCCACGCGACCATAAACCTAGCTTGGGGCATTGCTTGTGCAT
GTAGTTTTTTGTAAATACTTATGCAAGTACTCGAGTTTGGAAGTTTCATAAAATAGAAATGGTCTTTACTTGAGGAAACT
TGGTGGCGACACTCTGCCGCGTGCAATTCAAAAAGTTTT--ACACTTAATTGTGTTATTTGACATATGGCTCCCGCATAA
AAGTATGAAGCTGCCACTATTTCAACATGTATAAATGACCTACGGGAGATTAGTTACATGTTTAACGGACAAATCAACGT
GGGGATTAGGATTGGGAGCATCTCGCCAAAA---------AAAAAGGATTATAGCTGTACAAGCCCGTCATCCACCTCAC
GTATATATACACCGTTGCCCTAA---------------------------------------------------------
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--------------------------------------------------------------------------CCTCCC
AATTGACAACTCCATTTGTCCCATAATAAAGCGTTAGGCTCCCCTCCGCTCCATC----ATTAGTACTACTCAACAGA--
----GGTAGATCGATGGGGCCGGCACCCTGCACCAATGGCCTCCTCATCGTCC---TCCTCCTCGTGCTCGCCGTGGCCG
ACTTCGGGTCGGGGCAGCAGAACC---------CGCCTCCGCCAGGGGCGTACTACACGGCGAAGTTCAGCCCATCCAGG
GCCACCGTCATCATCGTCCTAATCGTCATCCTCGTCGCCTTCTTGTTCTTGTTCTTCCTCTGCCTCTTCTTGGTCTGCAT
CCACAACTGCC--------ATGGCGACACCTCCTACTCGGCCACTAGACTCCCGATAGGCGCCC---CCGCGGCGCGCCC
GCGACGACAGCAGCGCGGGCTCGACCCGGCCGTC---CTTGAGACCTTCCCGACCATGGCGTACGCCGACGTGAAGGAGC
ACAAGGCCGTCAAGGGCGCGCTGGAGTGCGCCGTGTGCCTCAGCGAGTTCGACGACGACGAGACGCTCCGCCTCCTGCCC
AAGTGCTCCCACG-------------------------------------------------------------------
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--------TCTTCCACCCGGACTGCATCGACACCTGGCTTGCCTCCCACATCACATGCCCGGTCTGCCGCGCGAACCTCG
TCCCCGACG------ACACCGACTTTCCGGGCACCGGCGGT---------GAGCTGTCGAGTGTCCATCCCGCTTCGCGG
CCGCCGCAAGAGGTGCCACCGTCAGCTTCTGCAACGGAGGCAGCTCCCACCGTCGTCATCGACGCGGAGGAGAGTGAGGA
CGAGAGGATCATCCGGGAAGATACGGACGAACTGGCGCGCATCGGCAGCCTGAAACGCGCGCTGCGCTCCAAGTCCAGCC
GAGCGCCCACGCACTTCTCGCGTTCGCACTCGACGGGGCACTCGCTCGCTGCGCGAGCCAGCAGCTGCACCGGCACGGGC
GCCGGCGTCGAGAGGTTCACGCTGCGGCTACCCGAGCCGGAGCACGCG---------------GGCAGACTACGGCGCAT
GAAGAGCCTCGCCGTGTTCACTGCCGGCCGCCAGGGCAGCACGTACCGTTCCCTCCGACTATGCG---------GCGACG
GCAGCAGCCGCAGCGGGACGAGAGTCCGGCTCGGCCAGTCAGGCCGGTGGCCATCTTTCTTGTCGCGGACTTTCTCCGCG
GCGTGGGGGGCGAGGTCCACCCAGAGTGCCGAGTTGGACGGGTCGAGCAAGGGCGGGAAG----------CCGGCGGCAA
GTCAGTGGAGTGCAAAGACCACTAGACCAGGCGTGCGCTGCTG-ACAACGTGTTTAATTTGACCGGGCCTTCCGTTGCGG
TCAAATGGTGTGTCACTCCAGCGAGAACCAAGGGTTTTTCTTTTTTCCTTACTTTTTTCACCCAAATAACCGATTTCCAA
ATTATCTCAGAAATTTCTGATTTTTT--GTCTGAATTATTCAAACAAATTTTGAAATCAAATAAGTAGTTTTGTTGCTTG
AGCTTTAATTTAGGAGTTTTAACTTAGCTAGCATATGTGCATTTGGGTTGTTGGCATATGTCCGGCTACATACTGAATGA
TTTTCCAGACACGTTTAGCGGGCAAAACGGCTGCCCATTAGCACTCGGCGGCAGCCAGCAATTTTACGAAACTTGTTTGC
CTTTCTAATAAGGAATGTTC-TTTCACCTGGTCTCTTTTCTCAGGATGTTTTAAGGGCATC-------------------
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-------------------------------------------------------------------------------A
CATTTGTTTAGTGTTGCAGCAATTTTTATTAAATGATATGCACTTTTTCCATTTTATTTATGAACATTCCCTAAAACCGT
ACATACCATTTTTAGAATTTTAAAAAGCATAATTGTCATATTTTTAAGCATGCGAATATTTTAATAATGTCAACAAACAT
TTTTTGATGAAACAAGCATTTTGAAGAAAAATGTAGGAAGCATTGTTATACAGTACAAGAATGTTTTTAGAATGTGTGGT
GAAGGTTTTTAAAACTTGGAAGTAACGTAATTTTTGAA------------------------------------------
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-------------------------ATATATATATATTTGTGAAATTTTCATATATAAATGAAATCGAAAATATTTCTAA
GAAAAATGAACAAAACAAACTATAACTAAACAAGGGAACTAATGAAGAACGAACAAAGAGAAGCAAAGGAATGAATGCTA
CTGAACCACGCTTGAGGCGAGGCGTACTTCTGTAACTGCAGACGGCAATTGTTTTTTTCTTCGGGGAACATCATACAAAA
GGGACCTCCTATT-AACGCACAGGTCGATGCATAGAGACCAAACGCGCAGGTCACATCTACCTCATGCTCGTAGAAGCCC
AGCCTATTAACACG
>chr3A_1
AGTGAAGTTAGCTTCGCAGGGAGCGTTGGGGAATGGAACGGAAAGAGCTGGGGATCGTGTTAGGTAGTTAAGGAGGCCAC
AAGGAGCACAATTAATG------------TCAAGGCTGCGACGGGCAAAGCAGCCGGCCACGTTCTCTCGCCTA----CT
AGATTCTATTCCCTGCGCGACCAACTACACTAA-----CCATGAACCTGTCTATCTCCACATGTTTTCAAACTTTCATTA
ATCCCCTTCGAAGCGACTTCCTGATTTT----------------------------------------------------
----------------------------------------------------TATTTGTTTAACACCAGGATCCACATGT
AACATCAACAAAAAACA-------TCCTTAAAGAAACATAACAACTA---------------------------------
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--------------------------------------------------TACCTTATATTGAAAAGACACCAAAGTTTG
AACGAGTCTATTGACGC----TATCTCACTGTTTTTGTTTCATGTATTTGTAATCTCTTATCTCTGCTGGTTTTATGTAC
TTGTACGCCATACATCTGTTTCGGTATAAACATGCTTTTATGGAGAAGTCGATACATTTTTAAATTTACTGGATCAAACA
TTTAATAAAA----------------------------------------------------------------------
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>chr3B_1
AGTGAAGTCAGCTTCGCAGGGAGCGCTGGGAAATGGAACGGAAAGAGCTAGGGATCGTGTTAGGTAGTTAAAGAGGCCAA
AAGGAGCACAATTAATGCACTAAATAATGTGAAGGCTGTGACGGGCAAAGCAGCCGGCCACGTTCTCTCGCCTA----CT
AGATTCTATTCCCTGCGCGACCCACTACACTTACCATGCCATGAACCTGTCTATCTCCACATGTTTTAAAACATTCATTA
ATCCCCTTCG-AGCGACTTCCTGATTTATACTCCTTCCGTCCGGAAATATTTGTCGGAAAAATGGATGTATTTTAATTTT
AGATACATTTATTTTATGCATTTCTTCGACAAATATTTCCGAACGAAGGGAGTATTTGTTTAACACCAGGATTTACGTGT
AATATAAAAACAAATATACGTATGTCCTTAAAGAAACATAACAACTACTCCCTCCGTTTTTAAATATTTGTCGTTTTAGA
GATTTCAAATGGATTACTATATACAGATATATATAGACATATTTTAAAGTGTAGATTCATTCATTTTGCTTCGTATGTAG
TCACTTGTTGAAATCTTTAGAAAAACAAATATTTAAGAACGGAGGGAGTATATCTTGTTTTGAAAAGATGGCCAAGTTTG
AGCG-GTCTATTCACGTTAATTATCTCACCGTTTTTGTTTCATGTACCTGTAATCTCTTATTTCTGCTGGTTTTATGTAC
TTGTACTTCATACATCTATTTCGGTACAAACATGCTTTTATGGAGAAGTCGACACATTTTTAAATTTACTGGATCAAAAA
TTTAATAAAATATATAAACAATCAT-------------------------------------------------------
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-----------CTCTGCCGCGTGCAATTCAAAAAGCACAGCACACTTATTTGTGTTATTTGACATATGACTCCCGCATAA
AAGTATGAAGCTGCCACTATTCAACATG---TAAATGACCAACGGGAGATTAGTTACATGTTTAACGGACAAATCAACGT
GGGGATTAGGATTGGGAGCATCTCGCCAAAAAGAAAAAAAGAAAAGGATTATAGCTGTACAAGCCGGTCATCCACCTCAC
GTATATATACACCGTTGCCCTACCTTCTAACTGACAACTCCATTTTTTTTAGCATCAGTACAAACACAAGCGCTCATATA
CACGCGCATACACGCATCCCTATGAACACACACACGCACACCCTACCCCTATGAGCACCTCTGAGATTTATGAAGTTACC
GTAGGCGCCTCGTCGTCGACGGGAACGTCTCCTCCCACTGAAAGCGCATCGCCGGAAATCCTAAAATAAATCCAGAAATA
ATGCGAGCACCAGGATTTGAACCCTGGTGAGTTGGGGATACCACTGTACACCTAACCAACTCAACCACAGGTTGATTCGC
AACTGACAACTCCATTTGTCCCATATTAAATCGCTAAGCTCCCCTCCGCTCGATC----ATTAGTACTACTCAACAGA--
----GGTAGATCGATGGGGCCGGCACCCTGCACCAATGGCCTCTTCATCGTCC---TCCTCCTCGTGCTCGCCGCGGCCG
ACTTCGGGTCGGGGCAGCAGAACC---------CGCCTCTGCTAGGGGCGTACTACACGACGAAGTTCAGCCCATCCAGG
GCCACCGTCATCATCGTCCTAATCGTCATCCTCATCGCCTTCTTCTTCTTGTTCTTCCTCTGCCTCTTCTTGGACTGCAT
CCACCACTGCTATGGGCCTATGGCCACAACTCCTACTCGGCCACTAGACTCCCGATAGGCGCCG---CCGCAGCTCGCCC
GCGACGGCATCAGCGCGGGCTCGACCCGGCCGTC---CTTGAGACCTTCCCGACCATGGCGTACGCCGACGTGAAGGAGC
ACAAGGCCGTCAAGGGCGCGCTGGAGTGCGCCGTGTGCCTCAGCGAGTTCGACGACGACGAGACGCTCCGCCTCCTGCCC
AAGTGCTCCCACGTCGAATGCAGATTCTGTGAGCTTATGCACCCGGGCCTCACTATCCTAACGCTCCATTGTTGCTTTGA
GATCTGTGCTACACAACTACCTTATTACATGGAATTTTCTCTTTTTTGTTCCTCTCATATAAAACATGTCTTGAACTTCA
AACTTTGCAGTACAACATAACTTTGTAACTAGAATGTGAGATAAAACTTTCAGATTTTTTTGTCCGACATAAATATGAAA
AAAATAAGATTTTTTAATCAAATAAATCTTATTTTGTATATTTATGTTGGACCAAAAAATCTGTAAGTTTTATCCCACAT
TCTACATAGAAAGCTTTGTTGTGCTGCAAAGTTGAAAGTACAAAAACATGTTCTATATGAGAGAAACAAAAAAGAGAAAA
TTATTTGCACGAATCCTGATGCAGAAATGAGTGGTTGGATAAGGAGTACCCGGGTGCATAGGCTCTAAAACATGTTTTCG
CTCCCACGTCTTCCACCCGGACTGCATCGACACCTGGCTAGCCTCCCACGTCACCTGCCCGGTCTGCCGCGCAAACCTCG
TCCCCAACG------ACACCGACTTTCCGGCCACCGGCGAT---------GAGCTGTCGAGCGTCCATCCCGCTTCGCAG
CCGCCGCAAGAAGTGCCGCCGCCAGATTCTGCAACGGAGGCAGCACCCACCGTCGTCATCGACGTGGAGGAGAGCGAGGA
CGAGAGGATCATCCGGGAAGAGACGGACGAACTTGCGCGGATCGGCAGCCTGAAACGCGCTCTGCGCTCCAAGTCCAACC
GAGCGCCCACGCACTTCTCGCGTTCGCACTCGACGGGGCACTCGCTCGCTGCGCCAGCCAGCA------TCTGCACCGGC
GCCGGCATTGAGAGGTTCACGCTGCGGCTGCCCAAGCCGGAGCACGCG---------------GACAGACTACGGCGCAT
GAAGAGCCTCGTCGCGTTCACTGCCGGCCGGCAGGGCAGCACGTACCGTTCCCTCCGACTATGCG---------GCGACG
GCAGCAGCCGCAGCGGGACAAGCGTCCGGCTGGGACAGTCAGGCCGGTGGCCATCTTTCTTGTCGCGGACTTTCTCCGCG
GCGTGGGGGGCGAGGTCCACCCGGAGTGCCGAGTTGGGCGGGTCGAGCAAGGGCGGGAAGCCGGCCGGCGCCGGCGGCAA
GTCAGTGGAGTGCAAAGACCACTAGACCAGGCGTGCGCTGCTG-ACAACGTGTTTAATTTGACCGGGCCTTCCGTTGCGG
TCAAATGGTGTGTCACTCCAGCGAGAACCAATGATTTTTCTTTTTTCCTTACTTTTTTCACTCAAATAACTGCTTTTCAA
ATTATCTCAGAAAATTTGGATTTTTTTCGTCTGAATTATTCAAACAAATTTTGAATTCAAATAAGTAATTTTGTTGCTTG
AGCTTTAATTTAGGAGTTTCAACTTAACTAGCATATGTGCATTTGGGTTGTTGGCATATGTT-GGCTACATACTGAATGC
TTTTCCAGACGCGTTTAGCGGGT-AAACGGCTGCCCATTAGCTTTCGGCGGCAGCCAGCCATTTTAGGAAGCTTGTTTGC
CTTCCTAATTAGGAATGTTC-TTTCACCTGGTCTCTCTTCTCAGGATGTTTTAAGGGCATC-------------------
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-------------------------------------------------------------------------------A
C-------------------------------------------------------------------------------
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>chr3A_729
CCC-----------------------------------------------------------------------------
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---------------------------------------------------------------------------CATAA
AAGTATGAAGCTGCCACTATTCAACATG---TAAATGACCTACGGGAGATTAGTTACATGTTTAACGGACAAATCAACGT
GGGGATTAGGATTGGGAGCATCTCGCCAAAAAGG-AAAGAAAGAAGGATCATAGCTGTATAAGCCTGTGAT---------
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-----------------------------------------CCAGGGGCGTACTACACGACGAAGTTCAGCCCATCCAGG
GCTACCGTCATCATCGTCCTACTCGTCATCCTCATCGCCTTCTTCTTCTTGTTCTTCCTCTGCCTCTTCTTGGTCTGCAT
CCACCACTGCT--------ATGGCGACACCTCCTACTCGGCCACCAGACTCCCGATAGGCGCCG---CCGCGGCGCGCTC
GCGACGACAGCAGCGCGGGCTCGAGCCGGCCGTCGACCTTGAGACCCTCCCGACCATGGCGTACGCCGACGTTAAGGAGC
ACAAGGCCGTCAAGGGCGCTCTGGAGTGCGCCGTCTGCCTCAGCGAGTTCGACGACGACGAGACGCTCCGCCTCCTGCCC
AAGTGCTCCCACGT------------------------------------------------------------------
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---------CTTCCACCCGGACTGCATCGACACCTGGCTTGCCTCCCACATCACCTGCCCGGTCTGCCGCGCGAACCTCG
TCCCCAACG------ACACCGACTTTCCGGCCACCGGCGAT---------GAGCTGTCGAGCGTCCATCCCGCTTCGCAG
CCGCCGCAAGAAGTGCCACCGCCAGCTTCTGCAACGGAGGCAGCACCCACCGTCGTCATCGACGCGGAGGAGAGCGGGGA
CGAGAGGATCATACGGGAAGAGACGGACGAACTGGCGTGCATCGGCAGCCTGAAACGCGCGCTGCGCTCCAAGTCCAGCC
GCGCGCCCACGCATTTCTCGCGTTCGCACTCGACTGGGCACTCGCTCGCTGCGCGAGCCAGCATCTGCACCGGCCCCGGC
GCCGGCGTCAAGAGGTTCACGCTGCGGCTGCCCGAGCCGGAGCACGCG---------------GGCAGACTACGGCGCAT
GAAGAGCCTCGTCGCGTTCACTGCCGGCCGCCAGGGCAGCACGTACCGTTCACTCCGACTATGCGGCGAGC-CGGCGACG
GCAGCTGCCGCAGCGGCACGAGCGGCCGGCTGGGCCAGTCAGGCCGGTGGCCATCTTTCTTGTCGCGGACTTTCTCCGCG
GCGTGGGGGGCGAGGTCCACCCGGAGTGCCGAGTTGGACGGCTCGAGCAAGGGCGGGAAGCCGGCCGGCGCCGGCGGCAA
GTCAGTGGACTGCAAAGACCACTAGACCAGGCGTGCGCTGCTG-ACAACGTGTTTAATTTGACCGGGCCTTCCGTTGCGG
TCAAATGGTGTGTCACTCCAGCGAGAACCAAGGGTTTTTCTTTTTTCCTTACTTTTTTCACCCAAAAAACCGCTTTCCAA
ATAATCTCAGAAATTTCAGATTTTTTA-GTCTGAAATATTCAAACAAATTTTGAATTCAAATAAGTAGTTTTGTTGCTTG
GGCTGTAATTTAGGAGTTTCAACTTAACTAGC--ATGTGCATTTGGGTTGTTAGCATATGTC-GGCTACATATTGGATGT
TTCTCCAGACACATTTAGTGGGC-AAACGGCTGCCCATTAGCGCTCAACGGCAGCCGGCCATTTTAGGAAACTTGTTTGC
CTTCCTGATTAGGAATGTTATTTTCACCTGGTCTCTCTTCTCAGGATGCTTTAAGGGTGTCGCTAGGGATTAGACTATTG
ATCCCTAACATTTCAGCAGAGCAGTTTGCTAAGGACGTGACTCGAATATAGAGGCACATGTCCTTGCTAAACACGCTTTA
GGGCTTCCTCTAGGGCTTTTGACCAATAAATTGAAGTGTGTTTAGTCTCAAAAAAGTCAAGCATAGGTTGAGCTAGCTCT
CTAACTACTATTGCACACAAAATTCAAAAGATTGTAGGTTGAACTCGCTGCAAGAGCATTAATTAGTTAGAATTGGGGAT
ACTGAGATAGCACAAAATGTTGTGAGATTCTGGAGTGCCCTTGAAAGAAAATGCTAAGTTATAGTATAGTTATATGATTC
GATTCAACTCGTGAGCTCCTCTGCTGTAAATAGAATAGTTTATTTACTTGAAATATAGTAGGCTCAGTTCATAAATTGAG
ACATGGGTGCTCTAACTAAGGGATGTTGCAACCGTGTAAATGAGCAATTTCTTATCATGTTCTAGAAGCTGTAAGCCTAC
AACTACATTTCTTATCTCTGAACTTTTGGTGAGCTTTTTTTTTACTCTGAACTTTTCGTGAGCTGGTGTGATGTCCCCAG
CGAGACGCGATGGTCCAATATTTTTAAATACAAGTTTGAACATTTAAACAAAATCATAAACATTTTTATACACATGCAAA
CATTTTTTTAGTGTTGCAGCAATTTTTATTAAATGACATGAACTTTTTCCATTTTATTTATGAACATTCCCTAAAACTGT
GCATACCATTTTTAGAATTTAAAAAAGTATAATTCTCGTATTTTTAAGCATGGGAATATTTTAAGAATGTCAACAAACAT
TTCTTGATGAAACAAGCATTTTGAAGAAAAATGTAGGAACCCCTGTTATACAGTACAAGAATGTTTTTAGAATGTGTGGT
GAAGGTTTTCAAAACTTCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGGATTGATTACTACTGAGGGCAATCAAATTATGTTCGACTTATAT
GGCGACCAGAGGTGGTTATGTGTTCGCCAATCAGGAGAGAACCGCGTTGGTTTGGTTCGGCCAAAGTGTGGTGACTCAGG
CGCGACGGACCAGCGCGTAGAATAATTTTCTTTGCGCTCAGGCTCACTTTAGCGCTCCTATATATATATATATATATATA
TATATATATATATATATATATATATATATATATATATTCATGAAATTTTCATATATA-----------------------
------------------------ACTAAACAAGGGAACTAATGAAGAACGGACAAAGAGAAGCGAAGGAATGAATGCTA
CTGAACCACGCTTGAGGCGAGGCGTACTTCTGTAATTGCGAACGGCAACTGTTTTTTTCTTCGGGGAACATCATACAAAA
GGGACCTCCTATTTAACGCACAGGTCGATGCATAGCGACCAAACGCGCAAGTCACATCTACCTCATGCTCGTAGAGGCCC
AGCCTATTTACACG
>chr5B_898
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---------CACCGTTTGCCGGA---------------------------------------------------------
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--------------------------------------------------------------------------CCTCCC
ATTTCACAACTCCAATTGTCCCATAA---AGCGTTCAGTTCCCCTCCGCTCGATCGATCATCAGCGCCACTCAACGGT--
----AGTAGATCGATGGGGCCGGCACGCTGCGCCAGTGGCCGCCTCCTGCTCCTCTTCCTGATCATGCTCGCCGTGGCAG
ACTTCGGGGCGGCGCAGCAGAACCAGAACCCGCCTCCGCCGGGCGGGCCGTACTACACGACCAACTTCAGCCCGTCCATG
GCCATCGTCATCGTCGTCCTCATCGCCGC------------------CTTCTTCTTCCTCGGCTTCTTCTCCGTCTACAT
CCGCCACTGCT--------ACGGCGACAGCCCCTACTCGGCCACCACGCTCCCCGTCGGCGCCG---CGGCCGCACGCTC
GCGGCGGCAGCAGCGCGGGCTCGACCCGGCCGTC---CTCGAGACCTTCCCCACCATGGCGTACGCCGACGTCAAGGAGC
ACAAGGCTGTCAAGGGCGCGCTCGAGTGCGCCGTGTGCATCAGCGAGTTCGACGACGACGAGACGCTCCGCCTGCTGCCC
AAGTGCTCCCACGT------------------------------------------------------------------
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---------CTTCCACCCGGACTGCATCGACACCTGGCTCGCGTCCCACGTGACGTGCCCGGTCTGCCGCGCCAACCTCG
TCCCCGATGCCGAC---ACCGGCGCTCCGGCCGCCGGCGATCAGCCGGCCGAGCTGTCGAGCGTCCATCCCGCCCCCCAG
CCGCAGGAATT---------ACCAGCGTCTGAGACGGAGGCGGCGCACGCCGTCGTCATCGACGTGGAGGAGAGCGAGGA
CGAGAGGATCATACGGGAGGAGACGGACGAGCTGACGCGCATCGGCAGCCTGAAGCGCGCGCTGCGGTCCAAGTCCAGCC
GCGGGCCCGCGCGCTTCCCGCGCTCGCACTCGACAGGCCACTCGCTCGCCACGCGAGCCAGCA------CGGGCGCCAGC
GCCGGCGCCGAGAGGTTCACGCTGCGGCTGCCGGAGAGCGTGCTCCGGGAGGTCGTCGCGGCCGGCAAGCTCCGGCGGAC
GAAGAGCCTCGTCGCGTTCACCGCCGGCCGCCAGGGCAGCATGCGCCGCGCCCTCCGACTAGGCGCCGGCGGCGGCGACG
GCAGCAGCCGCGGCGGGAGGAGCGTGCGGCTGGGCCAGTCCGGGCGGTGGCCGTCGTTCCTGTCGCGGACCTTCTCCGCG
GCGTGGGGGTCGAGGTCGACACGGAGGGCCGAGTCGGACGGGTCGAGCAAGGGCGGGAAGCCGGCCGGCGCCGGCGGCAA
GTCAGTGGAGTGCAAC--------GACCAGGCGTGCGCGGCTGGACAACGTGTTTAGTTGACCGGGGCCGTCCGCCGTGG
TCAGACGGTGCGT-------------------------------------------------------------------
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>chr5D_898
CACCG---------------------------------------------------------------------------
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---------------TTGCCGGA---------------------------------------------------------
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--------------------------------------------------------------------------CCTCCC
AGTTCACAACTCCATTTCTCCCATAA---AGCG-TCAGCTCCCCTCCGCCCGATCGATCATTAGCGCCACTCAGCAGA--
---GAGCAAATCGATGGGGCCGGCACGCTGCGCCAGTGGCCGCCTCTGGCTCC---TCCTCCTGGCGCTCGCCGTCGCAG
ACTTCACGGCGGCGCAGCAGAACCAGAACCCGCCCCCGCCGGGCGGGCAGTACTACACG---AACTTCAGCCCGTCCATG
GCCATCGTCATCGTCGTCCTCATCGCCGC------------------CTTCTTCTTCCTCGGCTTCTTCTCCGTCTACAT
CCGCCACTGCT--------ACGGCGACAGCCCCTACTCGGCCACCACGCTCCCGCTCGGCGCCG---CGGCCGCGCGCTC
GCGGCGGCAGCAGCGCGGGCTCGACCCGGCCGTG---CTCGAGACCTTCCCCACCATGGCGTACGCCGACGTCAAGGAGC
ACAAGGCCGTCAAGGGCGCGCTCGAGTGCGCCGTCTGCCTCAGCGAGTTCGACGACGACGAGACGCTCCGCCTCCTGCCC
AAGTGCTCCCACGT------------------------------------------------------------------
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---------CTTCCACCCGGACTGCATCGACACCTGGCTCGCGTCCCACGTGACGTGCCCGGTCTGCCGCGCCAACCTCG
TCCCCGACGG---CGACGCCGACGCCCCGGCCGCCGGCGATCAGCCGGCCGAGCTGTCGAGCGTCCATCCCGCCCCGCAG
CCGCAGGAATT---------ACCGGCGCCTGAGGCGGAGGCGGCGCACGCCGTCGTCATCGACGTGGAGGAGAGCGAGGA
CGAGAGGATCATACGGGAGGAGACGGACGAGCTGACGCGCATCGGCAGCCTGAAGCGCGCGCTGCGGTCCAAGTCCAGCC
GCGGGCCGGCGCGCTTCCCGCGCTCGCACTCCACAGGCCACTCGCTCGCCACGCGGGCCA------------GCACCGGC
GCCGGCGCCGAGAGGTTCACGCTGCGGCTGCCCGAGGGCGTGCTCCGGGAGGTGGTCGCGGCCGGCAAGCTCCGGCGGAC
GAAGAGCCTCGTCGCGTTCACCGCCGGCCGCCAGGGCAGCATGCGCCGTGCCCTCCGACTGGGCGCCGGCGGCGGCGACG
GGAGCAGCCGCGGCGGGAGGAGCGTGCGGCTGGGCCAGTCCGGGCGGTGGCCGTCGTTCCTGTCGCGGACCTTCTCCGCG
GCGTGGGGGTCGAGGTCGACACGGAGGGCCGAGTCGGACGGGTCGAGCAAGGGCGGGAAGCCGGCCGGCGCCGGCGGCAA
GTCAGTGGAGTGCAAC--------GACCAGGCGTGCGCGGCTGGGCAGCGTGTTTAGTTTGACCGGG-------------
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>chr5A_898
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---------CACCGTTGCCG------------------------------------------------------------
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-------------------------------------------------------------------------GCCTCCC
AGTTCACAACTCCGATCGTCCCATAA---AGCG-TCCAGCT---TCCCTCCGCTAGATCATCAGCGCCACTCAGCAGAGG
CACGAGCAGATCGATGGGGCCGGCACGCTGCGCCGATGGCCGCCGATGGCTCCTCCTCCTGATCGTGCTCGCCGTGGCAG
ACTTCGGGGCGGCGCAGCAGAACCAGAACCCGCCGCCGCCGGGCGGGCAGTACTACACC---AACTTCAGCCCGTCCATG
GCGATCGTCATCGTCGTCCTCATCGCCGC------------------CTTCTTCTTCCTCGGCTTCTTCTCCGTCTACAT
CCGCCACTGCT--------ACGGCGACAGCCCCTACTCGGCCACCACGCTCCCGCTCGGCGCCGGCGCGGCGGCGCGCTC
GCGGCGGCAGCAGCGCGGGCTCGACCCGGCCGTC---CTGGAGACCTTCCCCACCATGGCCTACGCCGACGTCAAGGAGC
ACAAGGCCGTCAAGGGCGCGCTCGAGTGCGCCGTCTGCATCAGCGAGTTCGACGACGACGAGACGCTCCGCCTCCTGCCC
AAGTGCTCCCACGT------------------------------------------------------------------
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---------CTTCCACCCGGACTGCATCGACACCTGGCTCGCGTCCCACGTCACCTGCCCGGTCTGCCGCGCCAACCTCG
TCCCCGACGCCGACGACGCCGACGCCCCGGCCGCCGGCGATCAGCCGGCCGAGCTGTCGGGCGTCCATCCCGCCCCGCAG
CCGCAGGAATT---------GCCGGCGCCTGAGGCGGAGGCGGCGCATGCCGTCGTCATCGACGTGGAGGAGAGCGAGGA
CGAGCGGATCATACGGGAGGAGACCGACGAGCTGACGCGCATCGGCAGCCTGAAGCGCGCGCTGCGGTCCAAGTCCAGCC
GCGGGCCCGCGCGCTTCCCGCGCTCGCACTCCACAGGCCACTCGCTCGCCACGCGAGCCAGCA------CCGGCACCGGC
GCCGGCGCCGAGAGGTTCACGCTGCGGCTGCCGGAGAGCGTGCTCCGGGAGGTGGTCGCGGCCGGCAAGCTCCGGCGGAC
GAAGAGCCTCGTCGCGTTCACGGCCGGCCGCCAGGGCAGCATGCGCCGCGCCCTCCGGCTAGGCGGCGGCGGCGGCGACG
GGAGCAGCCGCGGCGGGAGGAGCGTGCGGCTGGGCCAGTCCGGGCGGTGGCCATCGTTCCTGTCGCGGACCTTCTCGGCG
GCGTGGGGGTCGAGGTCGACACGGAGGGCCGAGTCGGACGGGTCGAGCAAGGGCGGGAAGCCGGCCGGCGCCGGCGGCAA
GTCAGTGGAGTGCAAC--------GACCAGGCGTGCGCGGCTGGGCAACGTGTTTAGTTTGACCCGGGCC----------
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>SNPs
------------S----------------------------------------S------------------------S-
----------------------------S---------------------------------------------SSSS--
----------------------------------------------------------S---------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
----------SS--------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------S-------
----S---------------------------------------S-----------------------------------
---------------------------------------------------S---S-----S------------------
-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS------------------------SSSS---------S-------------------S-----------
---------------------SS-SSSSSSS-------------------------------------------------
-----------------------------------------------------------------S--------------
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------------------------------------S--------------S----------------------------
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-----------------------------------------------------------S--------------------
---------------------------------S----------S-----------------------------------
----S-----S----------------------------------------------------S----------------
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------------------------------------------------------S-------------------------
------------------------------S--------S---------------------S----------------S-
-----------S---------S----------------------S-----------------------------S-----
---------------------S----------------------------------------------------------
---------------------------------------------------------------S------------S---
-----------------------------S--------------------------------------------------
-----------S--S-----------------------------------------------------------------
----------------------S--------S------------------------------------------------
----------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------S-------
-----------------S-------------------------------------S------------------------
-------------------S------S-----------------------------------S----------------S
-----------------------S------------------S----------------S------S-------------
---S-----S--------------------------S-------------------------------------------
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-----S------------------------------S---S------------------------------------S--
S-------------------S------S------S--S--------------S-----------S---------------
--S------------------------------------S-SS-------------------------------------
---------S-------S--SSSSSSSSSSSSSSSSSS------------------------------------------
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--------------------------------------SS-----------------SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS---------------------------S------------S---------------
-----------------------------------S---SS-------S-------------------------------
-----------------------------------S-------------S-------------------------S----
--------S-----
>forward_969
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---------------------------------------------------------------------TTGAGGAAACT
TGGTGGCGA-----------------------------------------------------------------------
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>reverse_2680
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---------------------------------------GTGAGCTGTCGAGTGTCCAT---------------------
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>forward_1805
--------------------------------------------------------------------------------
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-------------------------TCATCCTCGTCGCCTTCTTG-----------------------------------
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>reverse_3624
--------------------------------------------------------------------------------
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-----------------------AAAACGGCTGCCCATTAGCA-------------------------------------
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--------------
