>input_sequence_58928
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---------------------ATGTTCCGCCATTCCTCGTCGGCGCCTTCGTACGGCGACGCCTACATGCAGGAGGCCCT
GCCCGCAGTGCCGACCCTGATCCCTCGCTCTGCCGCCGGGGGATACTTCGACGGTGGCAAT---GTCGGTGGAGTGTTCC
CTCCCTTCGCC------G---CCGCCTCGTCTCCGCCGTCATCCTACTCCTCGTCG------------TACT---ACAAC
ATCCATCGCAGCATCAGCGCGCACTCGCTGCCGCTCCCGCTCCACATCCAGCTCGGCGACAACTTCAACGGCGGCGGCGC
ATTCTTCTCGTCCTCGTCCCCGTCCCCTCACCAGCAGCTGTCTTTGCCGCCCATGTCCTCCTCCCCGTCCTCCTCCTGCG
GCGATCTGTATGATTTCAGCAGCTCCGCATGCACAGTCCGCCGCGTCTTCAGCACCGGCGATCTCCAGGTACCACGCGCG
CCACAACCCCATCACTTGCACAATTGCGATCA----GGCTGTGTGGAGAGTGAAATCAAGCTGATCATCTGTTGTCTTCC
TTCCCTCGTGCTGACAAAACTAATGAAGCAGGGGATGAACGGGTCATCGCCGGTGCCGTCAGGCGACGGCTGCGGCCAAG
ACGCCGGAGGAGGCCCGTTCTCGCAGAAGGTCGGGCGATACAGCGCTGAAGAGCGCAAGGAGCGGGTAGAGAGATATCGC
TTAAAACGCCACCAGAGGAACTTCACCAAAAAAATCACCGTAAGTACCACCCCGAT-CTCCATCAG-ACCCTGCAAATGC
ACACCGTCTCTTGCCACTAACGTCTTGCCATCATTCGCTCTGGTTCCGCCAGTACGCGTGCAGGAAGTCGCTGGCCGACA
GCCGGCCGAGGGTGAAGGGCCGGTTCGCGAGGAACGGCGAGGCGGAGGCGGAGACCGACGACCGGGAGGCGTCCGATAAC
AGCTATGACTATTGCGGCTACAGCGAGCCCAGCAACCAGAGCACCGGGAACAGCCGCTACCACGGCCAGCAGCATATCAA
GGACGACAGAGTCTGCAACGGTGCCGCCGCAGCAGCGTTCGCTGGAGTCAGCGACAATGGCGACTGGTGGTGGCGGGCTC
CGGGGGCGGAGGGGCCGCGGCAGGTCGGCTTCGACGTCGACGAGGAGCTGTGGGCCACCCTGGGCGACATGCTGTCCGTG
AACCTGGCGTCGTAG-----------------------------------------------------------------
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-----------------------------------
>chr3B_1_TraesCS3B01G386800
CATTCTTCGAGCAATTTCTTTTGGTTTTCAAGTAAGAGCATATTGCAACGAGTAGCACCTTTCATTCACATATAATGATA
AAAATAGAAGCCAGGCAACCTTTTTAGGGACTATTGGCTATGCCACACAATTCAGCAGTACGACAAGTCCTTGATGCTCT
TCAGTCTGGACGATCTTGTAATGGTAGTCGGCTTATATGGTAGAATGGGCAAAAATGGCACCATCTCTTCACGGAATATG
GCTTTT-AAGGCTTTTATCATCAAATTTT---------------------CACAGTAATATATTTGTTCAAAAATACACT
TTCGTGCGCGATCAATCTGAATAGTTTGTGCACATCAAGGAAGCTCGACCATCAAAATTGTGCAATTTCATGTAGGCTGT
TCTTTGTTGGTCCGGTG--AAAAATCAACCCATCGCCTTTTTTTCTCATCGGAAAGAAGGGTCTTCTCCGG--CCTCCGC
ATAGTTGCTGCATGTTTTTGGAGAAAACGGGGGTTTCCCCTGATTTCCATTGCTGGAAACCAGATGGAAGTTCTTAC-AA
ACCACCAGCGTACAGTTGGTGCTTGTATTCACATCACTCATAGTCGTCTTCGTAACCTTCCACTCTTCCAGTGGTAGGGG
GATGTGACGGATCCCTCTTCACGTACGCCATCCATCTAAAAGCC---------TGATTCGACTGCTTAGGCGACTTGCCA
AACATTAGCGGTAAACAGTTATCATGCGGCATCGCCTGGATTAGTCTTTTTTACTGCAGGGGGAGAGAATAGTGCGCGTG
ACCCT-----ACCCTACCCTGCATCTTTCTTTTCAGTGCACAACAGCAGCACCGCTCGGGCGTGCACTAGTAG-------
CTGTAGTGTACGCGCCAAGCCCCGACCCTTCTTATACCCACGCCCCCTCCACTTCAACCTCCCAGCAAA-----ACACAC
ACGCACGCACACAGTCCCCGCACGAGCTGAAGGCACCCACAGGGCTTTTCATTTCCACGTACAGGGGAAGAAAGAAA---
-----GCCCGTCCGGCCGGAAATGTTCCGCCATTCCTCGTCGGCGCCTTCGTACGGCGACGCCTACATGCAGGAGGCCCT
GCCCGCAGTGCCGACCCTGATCCCTCGCTCTGCCGCCGGGGGATACTTCGACGGTGGCAAT---GTCGGTGGAGTGTTCC
CTCCCTTCGCC------G---CCGCCTCGTCTCCGCCGTCATCCTACTCCTCGTCG------------TACT---ACAAC
ATCCATCGCAGCATCAGCGCGCACTCGCTGCCGCTCCCGCTCCACATCCAGCTCGGCGACAACTTCAACGGCGGCGGCGC
ATTCTTCTCGTCCTCGTCCCCGTCCCCTCACCAGCAGCTGTCTTTGCCGCCCATGTCCTCCTCCCCGTCCTCCTCCTGCG
GCGATCTGTATGATTTCAGCAGCTCCGCATGCACAGTCCGCCGCGTCTTCAGCACCGGCGATCTCCAGGTACCACGCGCG
CCACAACCCCATCACTTGCACAATTGCGATCA----GGCTGTGTGGAGAGTGAAATCAAGCTGATCATCTGTTGTCTTCC
TTCCCTCGTGCTGACAAAACTAATGAAGCAGGGGATGAACGGGTCATCGCCGGTGCCGTCAGGCGACGGCTGCGGCCAAG
ACGCCGGAGGAGGCCCGTTCTCGCAGAAGGTCGGGCGATACAGCGCTGAAGAGCGCAAGGAGCGGGTAGAGAGATATCGC
TTAAAACGCCACCAGAGGAACTTCACCAAAAAAATCACCGTAAGTACCACCCCGAT-CTCCATCAG-ACCCTGCAAATGC
ACACCGTCTCTTGCCACTAACGTCTTGCCATCATTCGCTCTGGTTCCGCCAGTACGCGTGCAGGAAGTCGCTGGCCGACA
GCCGGCCGAGGGTGAAGGGCCGGTTCGCGAGGAACGGCGAGGCGGAGGCGGAGACCGACGACCGGGAGGCGTCCGATAAC
AGCTATGACTATTGCGGCTACAGCGAGCCCAGCAACCAGAGCACCGGGAACAGCCGCTACCACGGCCAGCAGCATATCAA
GGACGACAGAGTCTGCAACGGTGCCGCCGCAGCAGCGTTCGCTGGAGTCAGCGACAATGGCGACTGGTGGTGGCGGGCTC
CGGGGGCGGAGGGGCCGCGGCAGGTCGGCTTCGACGTCGACGAGGAGCTGTGGGCCACCCTGGGCGACATGCTGTCCGTG
AACCTGGCGTCGTAGTAGGCGATCGGTGGATCGACGGCATGGATGGGTCGGTGGAGCCGTTAGTGGTTTTTGGTGGGCTC
CGTCCGACGCACCAGACGGCAGCACTACCATAGCCCGATCGGTCAGGTCAGGGTGGCGGCTCGGCCAGCTGCCGTGTGCG
CGGCACAGTGCAGCCATGGAGG-------TCAGAGTGGCGCCCGTTGACCTTGTCCCCCGGGGTTGTATTATTGTAACCT
TTAGCCAGAAACATCATGAGAGTCGGAGACAAAAGGAGAG----ACCGATCGCCTTCCTCGTGTTAGACTTTGAGAACAA
CTTGTGTGTGTTCCGTGAGTTCCCGGTTACTTCCATGTATAAAAAAGCTTGAAAAATTATCTGTCCCACTCCCGGGTCCA
AGTGCATGCTCCTCTGTCGTCCAAAACACCCCTGGA-----------TCCTCAGTGCTGCCTGCCGGCTCCCCTGCAACC
TTCCGTGCTCGTTTTGTTTTGCC-ATTTTCCTTCTCCCCTGCG----------ACTGTTGTCGATCTCCCAGTGGCAGGG
GG-CACCTGTTTGTAACAAAGTCCACGCACTACATGGGCCATGGCCAGTCAGTGA-CGTGACAGGACAAGACACGACACG
ACGCTTCTGCATGCAGTCCGCGCGCA----TTTCAGCTCACACTACCGGCTTGCCCAGCCCGGCCGCGTACGTGGTTGGG
TGGGGTTGGGC----TGGCTGTTCCGTCCTCGTCGTCGTCGCGGGG----------AGATGGATCGATCGCAACGGCGAT
GGGAGGTCAAAGGGGTACGTGCGTGCGGATGGATCGCCGTCTCATCTCATCGCCAAGAGAG---GCGAGGCGCCCGTGAC
TGACGCGCAACCATCTCCATCTCCTCCGTGGCGACATCTACCTCAGCTTTTTCACGAGCGGTTAATGGCCGCTTCTCGGG
CCTTCTCATTGGCCCTGCGGTACGCATGTGAACCGCCCGAGCCAGTCCCCGAGTTGGTTAGCTGTTCGTTCGC----AGC
CGGGTCAGCTCAGCGGCACATGAATTTCACCTGGA
>chr3D_1
CATTCTCCGAGCAATTTCTTTTGGTTTTCAAGTAAGAGCATATTGCAACGAGTAGCACCTTATGGTATAATAGA------
-------AGGCCAGACAACCTTTATAGGGACTATTGGCTATGGCACACAATTCAGCAGTACGACAAGTCCTTGATGCCCT
TCAGTCTGGACGATCTTGTAATGGTAGTCGGCTTATATGGTAGAATGGGCATAAATGGCACTCTCTCTTCACGGGATATG
GCTTTT-AAGGTTTTTATCATCAAATTTCCACAGTAATGTATTTTTTTTCCACAGTAATATATTTGTTCAAAAATATACT
TTCGTG--CGATCAGTCTGAATAGTTTGTGCACATCAAGGAAGCTCGATCATTAAAATCGTGCAATGTCATGCGGTCCAT
TCTTTGTTGTTATGGTGAAAAAAATCAACCCGTCGCCTTTTT--CTCATGGAAAAGGAGGGTTTTC--CCCAGCCTCCGC
ATAGTTGATGCATGCTTTTGGAGAAAACGGGGTTTTCCCTTGATTTCCATTACTAGAACCCAGGTAGAAGTTCCTGCAAA
ACCACCAGCTTATGGTTGGTGCATGTATTCACATCACTTACAGTCATCTTCCTGACCTTCCACTCCTCCAGTGGTAGGGG
GATGTGACGGATCCCTCCTCACGTACGCCATCCATCCAATGATCCAAGCCTGATGATTCGACTGCTTAGGCGACTTGCCA
AACATTAGCGGTAAACTGTTATCATGCGGCATCGCCTGGACTAGTCTTTTTTACTGCAGCGGGAGGGAATAGTGCGCGTG
ACCCTACCCAACCCTACCCTGCATCTTTCTTT-CAGTGCACAACAGCACTACTAGCT-----------------------
CTGTAGTGTACGCGCCAAGCCCAGACCCTTCTTATACCCGCGT-CCCTCCACTTCAACCTCCCAGCAAA-----ACACAC
GCACACGCACACAGTCCCCGCACGAGCTAAAGGCACCCACAGGCCTTTTCATTTCCACGTCCGGAGGAAGAAAGTCCGTC
CGT----CCGGCCGGCCGGAAATGTTCCGTCATTCCTCGTCGGCGCCTTCGTACGGCGACGCCTACATGCAGGAGGCCCT
GACCGCCGTGCCGACCCTGATCCCTCGGTCTGCCGCCGGGGGATACTTCGACGGTGGCAAT---GTCGGTGGAGCGTTCC
CTCCCTTCGCC------GCCACCGCCTCGTCTCCGCCGTCGTCCTACTCGTCGTCGCTCCAGTCGTCGTACTACAACAAC
ATCCACAGGAGCATCAGCGCGCACTCGCTCCCGCTCCCGCTCCACATCCAGCTCGGTGATAACCTCAACGGCGGCGGTGC
ATTCTTCTCGTCCTCGTCCTCGTCCCCTCACCAGCAGCTGTCTTTGCCACCCATGTCCTCCTCCCCGTCCTCCTCCTGCG
GCGACTTGTACGATTTCAGCAGCTCGGCTTGCACAGTCCGCCGCGTCTTCAGCACCGGCGATCTCCAGGTAC----GGCG
CCAGAATCCGGTAACTTGCACAATTGCGATCGATCGGGCTGTCTGGAGATCGCAATTGAGCTGTGGA-CTCTTGTTTTCC
TTGCCTTTTGCTGACAAAACTAATGAAGCAGGGGATGAACGGATCATCGCCGGTGCCGTCAGGCGACAGCTGCGGCCAAG
ACGCCGGAGGAGGGCCGTTCTCGCAGAAGGTCGGGCGATACAGCGCAGAAGAGAGGAAGGAGCGGGTGGAGCGATATCGC
TTGAAACGCCACCAGAGGAACTTCACCAAAAAAATCACCGTAAGTACCATCTCGATTCTCCATCAACACCCTGCAAATGC
ACACCGTCTCTTGCCACTAACGTCTTGCCATCATTGGCTCTGG-TCCGCCAGTACGCGTGCAGGAAGTCTCTGGCCGACA
GCCGGCCGAGGGTGAAGGGCCGGTTCGCGAGGAACGGCGAGGCGGAGGCGGAGACCGACGACCGGGAGGCGTCCGACAAC
AGCTACGACTACTGCGGGTACAGCGAGCCCAGCAACCAGAGCACCGGGAACAGCCGCTACCACGGCCAGCAGCATATCAA
GGACGACAGCGTCTGCAACGGCACCGCCGCAGCAGCGTTCGCTGGAGCCGGCGACAATGGCGACTGGTGGTGGCGGGCAC
CGGGGGCGGAGGGGCCGCGGCAGGTCGGCTTCGACGTCGACGAGGAGCTGTGGGCCACCCTGGGCGACATGTTGTCCGTG
AACCTGGCCTCGTAGTAGGCGATCGACGGC---ACGGCATGGAAGGGTCGGTGGAGCCGTTAGTTGTTTTTGGTGGGCTC
CGTCCGGCGCACCAGACGGCAGCACTACCATAGCCCGATCGGTCAGGTCAGGGTGGCGGCTCGGCCAGCTGCCGTGTGCG
CGGCACAGTGCAGCCATGGAGG-------TCAGAGTGGCGCCCGTTGACCTTGTCCCCCGGGGCTGTATTATTGTAACCT
TTAGCCAGAAACATCATGAGAGTCGGAGACAAAAGGAGAGAGAGACCGATCGCCTTCCTCGTGCTAGACTTTGAGAACAA
CTTGTGTGTGTTCCGTGAGTTCCCGGTTACTTCCATGTATAAAAAAGCTTGAAAAATTATGTGCCCCACTCCCGGGTCCA
AGTGCATGCTCCTCTGTCGTCCAAAACTCACCTGAA-----------TTCTCAGTGCTGCTTGCCGGCTCCCCTGCAACC
TTCCGTGCTCGTTTTGTGTTGCCCATTTTCCTTCTCCTCC--GACTACACTCAACTGTTGTCGATCTCCCAGTGGCAGGG
GGGCACCTGTTTGTAACAAAGTCCACGCACTACATGGGCCATGGCCAGTCAGCGACCGTGACAGGACAAGACACGACACG
ACGCTTCTGCATGCAGTTCGCGCGCATTTCTTTCAGCTCACACTAGCGGCTTGCCCGACCCGGCCGCGTACGTGGTTGGG
TGGGGTTAGGC----TGGCCGTTCCGTCGTCGTC----------GG----------AGATGGATCGATCGCAACGGCGAT
GGGAGGTCAAAGGGGTACGTGCGTCCGGATGGATCGCCGTCTCATCGCCG--------GAGAGCGCGAGGCGCCCGTGAC
TGACGCGCAACCATCTCCATCTCCTCCGTGGCGACATCTACCTCAGCTTTTTCACGAGGGGTTAATGGCCGCTTCTCGGG
CCTTCTCATTGGCCCTGCCGCACGCATGTGAT----------CAGTCCCCGATTTGGTTAGCTGTTCGTTCGC----AGC
CGGGTCAGCTCAGC---------------------
>chr3A_1
CATTCTTCGAGCAATTTCTTTTGGTTTTCAAGTAAGAGCATATTGCAACGAGTAGCACCTTTCATTCATATATTGATAGT
-AAATAGAGGCCAGACAGCCTTTTTAGGGACTATTGCCTATGGCACACAATTCAGCAGTACGACAAGTCCTTGATGCTCT
TCAGTCTGGACGATCTTGTAATGGTAGTCGGCTTACATGGTAGAATGGGCATAATTGGCACTCTCTCTTCACGGAATATG
GCTTTTAAAGGTTTTTACCATCAAATTTCCACAGTAAA---------------------ATATTTGTTCGAAAATATACT
TTCGTG--CGATCAGTCTGAATAGTTTGTGCACATTAAGGAAGCTCGACCATCAAAATTGTGCAATCTCATGTAGGATGT
TCTTTGTTGGTCCGGTG--AAAAATCAACCCGTCGCCTTTTCC-CTCTTCGAAAAGGAGGGTTTTC--CGG--CCACCGC
ATAGTTGATGCATGTTTTTGGAGAAAACGGGGTTTTCCCCTGATTTCCATTACTAGACCCCAGATAGAAATTCTTAC-AA
ACCACCAGCATACAGTTGGTGCATGTATTCACATCACTCACAGTCACCTTCCCAACCTTCCACTCTTCCAGTGGCAGGGG
GATGTGACGGATCCCTCTTCACGTACACCATCTATCCATCT----AAGCCTGATGATTCGACTGCTCAGGCGACTTGCCA
AACATTAGCGATAAACGGTTATCATGGGGCATGGCCTGGATTGGTCTTTTTTAC------------------TGCGCGTG
ACCCTACCCAACCCAACCCTGCATCGTTCTTTTCGGTGCACAACAGCACCGCCGCTCGGGCGTGCACTAGTAGCTGTAGG
CTGTAGTGTACGCGCCAAGCCCCGACCCTTCTTATACCCACG-CCCCTCCACTTCAACCTCCCAGCAAACACGCACACGC
ACACACGCACACAGTCCCCGCACGAGCTAAAGGCACCCACAGGGCTTTTGATTTCCACGTCCGGAGGAAGAAAGTCCGTC
CGTCCGCCCGTCCGGCCGGAAATGTTCCGTCATTCCTCGTCGGCGCCTTCGTACGGCGACGCCTACATGCAGGCGGCCCT
GGCCGCCGTCCCCACCCAGATCCCTCGCTCTGCCGCCGGGGGATACTATGACAGCGGCAATGTTGTCAATGGCGCGTTCC
ATCCCTTCGCCGCCACCG---CCGCCTCGTCTCCGCCGTCGTCCTACTCCTCGTCG------------TACTACAACAAC
ATCCATAGGAGCATCAGCGCGCACTCGCTCCCGCTCCCGCTCCACATCCAGCTCGGCGACAACCTCGGCGGCGGCGGCGC
ATTCTTCTCGTCCTCGTCCCCGTCCCCTCACCAGCAGCTGTCTTTGCCTCCCATGTCCTCCTCCCCGTCCTCCTCCTGCG
GCGATCTGTACGATTTCAGCAGCTCCGCATGCACAGTCCGCCGCGTCTTCAGCACCGGCGATCTCCAGGTAC----CGCG
CCACAGCCCTGGAACTTACACAATTGTGATCGATCGGGCTGTCTGGAGATTGCAATTGAGCTGTCGA-CTGTTGTTTTCC
TTGCCTTTTGCTGACAAAACTAATGAAGCAGGGGATGAACGGGTCATCGCCGGTGCCGTCGGGCGACGGCTGCGGCCAAG
ACGCCGGAGGAGGGCCGTTCTCGCAGAAGGTCGGGCGATACAGCGCAGAAGAGAGGAAGGAGCGGGTGCAGCGATATCGC
CTGAAACGGCACCAGCGAAACTTCACCAAAAAAATCACCGTACGTACCATCCCGAT-CTCCATCAACACCCTGCAAATGC
ACGCCGTCTCTTGCCACTAACGTCTTGCCATCATTGGCTCTGGTTCCGGCAGTACGCGTGCAGGAAGTCGCTGGCCGACA
GCCGGCCGAGGGTGAAGGGCCGGTTCGCGAGGAACGGCGAGGCGGAGGCGGAGACCGACGACCGGGAGGCGTCCGACAAC
AGCTACGACTACTGCGGTTACAGCGATCCCAGCAACCAGAGCACGGGGAACAGCCGCTACCACGGCCAGCAGCATGTCAA
GGACGACAGCGTCTGCAACGGCGCCGCCGCAGCAGCGTTCGCCGGAGCCGGTGACAATGGCGACTGGTGGTGGCGGGCGC
CGGGGGCAGAGGGGCAGCGGCAGGCCGGCTTCGACGTCGACGAGGAGCTCTGGGCCACCCTGGGCGACATGCTGTCCGTG
AACCTGGCCTCGTAGTAGGCGATCGACGGC---ACGGCATGTAAGGGTCGGTGGAGCCGTTAGTGGTTTTTGGTGGGGGC
CGTCCGGCGCACCAGACGGCACTATTATAGC-------TCGGTCAGGTCAGGGTGGCGGCTCGGCTGGCCGCCGTGTGCG
CGGCACAGTGCAGCCATGGAGGGGCGAGGTCAGAGTGGCGCCCGTTGACCTTGTCCCCCGGGGCTGTATTATTGTAACCT
TTAGCCAGAAACATCATGAGAGTCGGAGACAAAAGGAGAGAGAGACCGATCGCCTTCCTCGTGCTAGACTTTGAGAACAA
CCTGTGTGTGTTCCGTGAGTTCCCGGTTACTTCCATGTACAAAAAAGCTTGAAAAATTATCTGCCCCACTCCCGAGTCCA
AGTGCATGCCCCTCTGTCGTCCAAAGCACCCCTGAATCCTCACCTCTTCCTCAGTGCTGCCTGCCGGCTCCCCTGCGACC
TTCCGTGCTCGTTTTGTTTCGCCCGTTTTCCTTCTCCTCTGAGACTACACTCAACCGTTGTCGACCTCCCAGTGGCACGG
GG-CACCTGTTTTTAACAAAGTCCACGCGCTACATGGGCCATGGCCAGCCAGTGA-CGTGACAGGACAAGACACGGCACG
ACGCTTATGCATGCAGTTCGCGCGCA----TTTCAGCTC------------TGCCCAGCCCGGCCGCGTACGTGGTTGGG
TGGGGTTGGGCTGGCTGGCTGTTCCGTCGCCGTCGTCGTCGTCGTCGCGGGGAGATAGATCGGTCGACCGCAACGGCGAT
GGGAGGTCAAAGGGGTACGTGCGTGCGGACGGATCGCCGTCTCATCGCCG--------GAG---GCGAGGCGCCCGTGAC
TGACGCGCAACCATCTCCATCTCCTCCGTGGCGACATCTACCTCAGCTTTTTCACGAGGGGTTAATGGCCGCTTCTCGGG
CCTTCTCATTGGCCCTGCCGCACGCATGTGAT----------CAGTCCCCGAGTTGGTTAGCTGTTCGCTCGCAGCGAGC
CGGGTCAGCTCAGC---------------------
>SNPs
--------------------------------------------------------------------S-----SSS-SS
S-------S-----S---------------------------S-------------------------------------
---------------------------------------------------S---------SS-----------------
-----------S----------------S-----------------------------------------------S---
------SS------S---------------------------------------------------S-------------
-------------------------------S----------SS-------S----S-----S---SS------------
-------S------------------------S------------------S--S---S------S--------------
---------S------------S-----------------S----S-----S----------------------------
------------------------------------S--SSSS-------------------------------------
----------------S------------------------------------------S-----S--------------
------------------------------------------------S-------------------------------
------------------------------------------S-------------------------------------
--S-------------------------S-------------------------------S-S-S---------SSS---
-----------------------------S--------------------------------------------------
-S----S-------------------------------------------------------------------S-----
----------------------------------------S---------------------------------------
------S-S--------------------S---------------------------------S----------------
------------------------------------------------S-------------------------------
----------S-------------------------------------------------------------SSSS----
---------SS-S------------------S----------S------S--S---SS-----SSS-S-------S----
--S---SS------------------------------------------------------------------------
-------------S--------------------------------S------S-S-----------S---S--------
--S----------------------------------------------S---------------S--------------
-----------------------------------S--------------------------------------------
----------------------------------------------------------------------------S---
-----S-----S-----S--------------------------------------------------------------
---------S-----------S-------------------------S-S----------------------------S-
--------------------------------------------------------------------------------
--------S----------------SS--SSSS----------S------------------------------------
------S-------------------------------------------------------------------------
---------------------------------------------------------------S----------------
---------------------------------------------------------------S----------------
---------------------------------------------------------------S----------------
----------------------------------S---------------------------------------------
-------------------------------------S---S--------------------------------------
--------------------------------------------------------------------------------
-----------------S---------------------------S----------------------------------
----------------------------S------------SS-------------------------------------
----------------------------------------------S-SSSSSSSSSS----------------------
----------------------------------------------------------S---------------------
------------------S-S----------SSSSSSSSSSS--------------------------------------
--------------SSSSSSSSSSSSSSSSSSSSS
>forward_963
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---------------------------------------------------------------CTCCCAGCAAAACACAC
ACG-----------------------------------------------------------------------------
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>reverse_2249
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--------GTCGTAGTAGGCGATCGGTG----------------------------------------------------
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>forward_1570
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------------------------------CGATCAGGCTGTGTGGAGAG------------------------------
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>reverse_3242
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-----------------------------------------CCAGTCCCCGAGTTGGTTAG-------------------
-----------------------------------
