>input_sequence_58888
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-------------------------------------------------------------ATGGACAGGGACGCCGGGT
GCTACTACCTCGGCGGCGGAGGCGGCAACGACTGGGACCTCAACGCCGTCGTGCGCTTCGCCTGCCGCGGCCGCGTCCTC
CCGCCGCCGCCCTCGGACGACCCCTTCTCCTCCTTCTTCCCCCCGCCGGCGCCTGTCGTGGAGGACCACGGGATGCCTGA
CGCGGCGGCGTTGCTCCCTGATCCGCCCGTCC------ACGGGGGCTCTGCTACCGTCGACGAGCTCTCCATTGCCTTCT
TCGCGCCGTCGGCTGCGCTGCCGGCCTCGCCTCAACCGCCGCCGCCGC------TGCAGCAGCAGCCAGCGGCGCCAACG
AACCAAGAAATGGTGCCGATGCAGCAAGACGAGGCGGTGCCGCCTCCGATGCTGCTGACCGCGGGCGGGCAAGGCCCCGT
CGGCGAAGGGTCGAGATCCAAGAGAAAGTACGTCCCGAACACT--GAA-TTTTTCGAAATAAAATGTTGCTAGCTTATCG
TGTATGCTTGTGCTCACGCGTGCGCGTGGATGATTGGCGTCTGTGCAGGAAGAAGGTGGTGAAGAAGGTGGTGAAGCGGG
TGGCGGCGGACGGCACGTCGGCGGACCCGTGGGCGTGGCGCAAGTACGGGCAGAAGCCCATCAAGGGGTCGCCGTACCCG
CGCGGGTACTACCGGTGCAGCACCGACAAGGCGTGCGAGGCGCGGAAGATGGTGGAGCGCTGCCGCGACGACCCCAACTC
CTTCATCCTCACCTACACCGGCGGCGAGCACAGCCACCCCGCCCCCGCCCACCGCAACTCCCTGGCCGGCACCACGCGCA
ACAGGCAGCAGGCGCCGGAACCTGCTGCCGGACAGAGCGCTCCCGCCGCCAAAGCCAAAGAAGAGTCGTCGGCGGCGGCG
GCGGAGCCGAGCCCAGCGCAGTCGACGTCGGGCGGGATGTCCCCGACGACGCCCCTGCGCACGCCCTCCATGGAGGAGTA
CAACCAAGACTCAGAATTCGACGAGGCCGCCGGCAGCGCAAGTCAGCTGCCCATGGACGTCGAGAAGGACCGCGAGGATG
AGCTGCTGAAGATATTGGAGGGGTGCGTGCACGGCGGCGACTCCAGCATCGTCGTCGAGGAGACGTTCGTGGTCACGCCG
TGGGTCACGGCCCCCGGCGGCGCGGCCGGGTGGAGTTGA-----------------------------------------
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>chr7B_1_TraesCS7B01G240000
ATTCCACCAAATCCCCCTCTCTCCCTTCCAACATTATCAATGGCCACTGATGGGCTTAGAAATTCTATCAGACACCATCA
TATTGGCCGCGTTATATGAATGCATTACATTGATATATTGTATATTACATGGTGTTATCAATGGCCAATGAGCAGCTTAG
AAATTCTACCTGACGCCATTCTATATACCGTGTTATATGAATGCATTGTGTTGATGTAATGTATATCACATGGTGTTATC
AATGGCCAATGAGCAGCTTAGAAATTCTACCTGACGCATCATATCTGGCGCTTTGTACGAATGTGTGCGTTGATATATTG
TACTCCCTCCGTAAACTAATATGAGCGTTTAGAATATTAAAGTAGTGATTTAAACGCTTTTATATTAATTTACAGAGGGA
GTATATTGCATAGTGTTATGGGTGGCCAATGCGCATCCTAGTAGAAATTAAACATCAGTAAGCAAATAATTTACACGGTA
GAATATTCGCAAGAAAAAAGAATAATCGCAAAAAGTATACTCATTGCCCATATGAGTACTGAAGAAAT---AAAAAGAGA
AGAAAAAAAACTGTATGTTCATATGGGCAATGAGTATATTTTCTCTTGCTCCTCCAGCAACGGTGA------AAA-GGTC
CCCACCAAAAAAAAGAGAAA--GAAAGCAAGGGTGAAAACATATTCCTAGAATCGACCGTGCTCTGTCCCCGCCTGGCCT
CTCACTCTCTCACCCCTTTGACTTTGTCACCAAAGTCAAGTGGGGACCTTGCCCCACCCCTCCAGAGACCACGAGGCCGG
CTCCCGATAAAACGCAGCCCCCTCGGCCCCCTCTCTCCTCCTTTTCAGACACCACGAGCGAGGCCGGATCCAATGCCCAT
CCCTTCCCCACCACCACCATCTCTCTCCTCCCACCAACAGCGCCAACAATAAACTAGAACCAAAAGTCAGCGCCCCCCTC
CT-----TTCCTTCCTCCATAGCCAGCAAGAACGAACGAACCCGAGAGAG----GCCGACCATGGACAGGGACGCCGGGT
GCTACTACCTCGGCGGCGGAGGCGGCAACGACTGGGACCTCAACGCCGTCGTGCGCTTCGCCTGCCGCGGCCGCGTCCTC
CCGCCGCCGCCCTCGGACGACCCCTTCTCCTCCTTCTTCCCCCCGCCGGCGCCTGTCGTGGAGGACCACGGGATGCCTGA
CGCGGCGGCGTTGCTCCCTGATCCGCCCGTCC------ACGGGGGCTCTGCTACCGTCGACGAGCTCTCCATTGCCTTCT
TCGCGCCGTCGGCTGCGCTGCCGGCCTCGCCTCAACCGCCGCCGCCGC------TGCAGCAGCAGCCAGCGGCGCCAACG
AACCAAGAAATGGTGCCGATGCAGCAAGACGAGGCGGTGCCGCCTCCGATGCTGCTGACCGCGGGCGGGCAAGGCCCCGT
CGGCGAAGGGTCGAGATCCAAGAGAAAGTACGTCCCGAACACT--GAA-TTTTTCGAAATAAAATGTTGCTAGCTTATCG
TGTATGCTTGTGCTCACGCGTGCGCGTGGATGATTGGCGTCTGTGCAGGAAGAAGGTGGTGAAGAAGGTGGTGAAGCGGG
TGGCGGCGGACGGCACGTCGGCGGACCCGTGGGCGTGGCGCAAGTACGGGCAGAAGCCCATCAAGGGGTCGCCGTACCCG
CGCGGGTACTACCGGTGCAGCACCGACAAGGCGTGCGAGGCGCGGAAGATGGTGGAGCGCTGCCGCGACGACCCCAACTC
CTTCATCCTCACCTACACCGGCGGCGAGCACAGCCACCCCGCCCCCGCCCACCGCAACTCCCTGGCCGGCACCACGCGCA
ACAGGCAGCAGGCGCCGGAACCTGCTGCCGGACAGAGCGCTCCCGCCGCCAAAGCCAAAGAAGAGTCGTCGGCGGCGGCG
GCGGAGCCGAGCCCAGCGCAGTCGACGTCGGGCGGGATGTCCCCGACGACGCCCCTGCGCACGCCCTCCATGGAGGAGTA
CAACCAAGACTCAGAATTCGACGAGGCCGCCGGCAGCGCAAGTCAGCTGCCCATGGACGTCGAGAAGGACCGCGAGGATG
AGCTGCTGAAGATATTGGAGGGGTGCGTGCACGGCGGCGACTCCAGCATCGTCGTCGAGGAGACGTTCGTGGTCACGCCG
TGGGTCACGGCCCCCGGCGGCGCGGCCGGGTGGAGTTGACTCCGCCGTTACCGTCCGTACATTGCCATATATAGCAGCAT
GCTGTCAATTATAATCCTGGCTCGTTGCAGCAGCAGCCGCAGCGGTAGCAGTAGAAACATAAGAAAGGAAAAGAAAAAAG
ACAGAGGTGGAAGAGAGCATCTGATCCATGCTACAACCCCAGTGCCAGCCGGCCAGTAGTTATTCGCCTAGTGTAATTAA
GTGCTAATTAGCTCTGGAGTAATACAGTAGCGAGTGTTCTTTGATGGCTTGATTAGAGTACTTATACTGCATGTATAATT
AAACCAAACCCAAAGACAATGTTTTTC-----TCTTCTTCTTTCTTGACATGTTTGGGCCATTCAGTGGCTGCCTAGCTT
TATCTAGAGGTTTTTGGTGCTACATTTGTGCGTACACTAGCTAGACTGATCATCATCATCATGATACAGTCCCAGTTGCA
CCCAGGTGATGGGGCAAGAAGG-TG----AGATAAAGGGAGGACAGAAATGGAAGAAAGGAAGAGGAGTTGGTGCATGGT
GTGGGTGGCTCCCCTTGCCTCTTCCCTTTCACTGTGTGCCCAATTTGTGTGTGTAGTGGCTTTCTGGCTGCAGTGCAGTT
ATGCTTTTGCAGATCAGGACCATGTTGCTCCGGCCCAATGGATGGTACCTTTTGATTCTCGGATCTCGGTCCTATGTGTA
TTGGGACGTACTGCTGCTGCAACCAATCCTCATT-CCCCAATTTTCATGTTGCTCTTCTCAGTGTAATGT-------GAT
GTTGGTTTCTTTGGATGCTGCTGAAGTACATGGCGTGTAATTCCTAATGAAAACATCGGCTTTTTCGGTCGAATGTGGAT
GTATATAAGGTCTTGTACAATGGGAGGTGCTTAGGGAAGATGCTTAGAGAAATAAATCAAACTTTTTTTAAGCACTAGTG
CTTATTTGTATAGGATAGACGCTTAACTAAGCGTCTCTCCTGTAGAAATAGGCACCGGTGCTTCAAGAAAACCCGGTTTA
TTTTTCTAAGCATCTCT
>chr7D_402
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-TATATTACATAGTGTTACGAATGACCAATGCGCATCCTA-TAGAAATTAAACATCGGTAAGCAAATAATTTACACGGTA
GAATATTCGCAAGAAAAAAGAATAATCGCAAAAAATATACTCATTG-CCATATGAGTACTGAAAGAAAATAAAAAAGA--
--AAAAAAAACTGTACGTTCACATGTGTTGCG----------CTCTTGCTCCTCCAGCAACGGTGA------AAAAGGTC
CCCACCAAAAAAAAGAGAGAAAGAAAGCAACGGTGAAAACATATTCCTAGAATCGACCGTGCTCTGTCCCCCCCTGCCCT
CTCACTCTCTCACCCCTTTGACTTTGTCGCAAAAGTCAAGTGGGGACCTTGCCCCACCCCTCCAGAGACCACGAGGCCGG
CTCCCGATAAAACGCAGCCCCCTCGCCCCCCTCTCTCCTCCTTTTCAGACACCACGAGCGAGGCCGGATCCAATGCCCA-
----TCCCCACCACCACCATCTCTCTCCTCCCACCAACAGCGCCAACAATAAACTAGAACCAAAAGTCAGCGCCCCCCTC
CT-----TTCCTTCCTCCATAGCCAGCAAGAACCAACT----CTCCCCGCGCGAGCCGACCATGGACAGGGACGCCGGGT
GCTACTACCTCGGCGGCGGAGGCGGCAACGACTGGGACCTCAACGCCGTCGTGCGCTTCGCCTGCCGCGGCCGCGTCCTC
CCGCCGCCGCCCTCGGAGGACCCCTTCTCCTCCTTCTTCCCCCCGCCCGCGCCCGTCGTGGAGGACCACGGGATGCCTGA
CGCGGCGGCGTTGCTCCCTGATCCTCCCGTCGACGGG------GGCTCTGCTGCCGTCGACGAGCTCTCCATTGCCTTCT
TCGCGCCGTCCGCGGCGCTGCCGTCCTCGCCTCAGCCGCCGCCGCCGCCGCAGCAGCAGCAGCAGCCAGCGGCGCCAACG
AACCAAGAAATGGTCCCGATGCAGCAAGACGAGGCGGTGCCGCCTCCGATGCTGCTGACCGCGGGCGGGCAAGGCCCTGT
CGGCGAAGGGTCGAGATCCAAGAGAAAGTACGTCCCGAACACTCTGAATTTTTTCGAAATAAAATGTTGCTGGCTTATCG
TGTATGCTTGTGCTCACGCGTGCGCGTGGATGGTTGGCGTCTGTGCAGGAAGAAGGTGGTGAAGAAGGTGGTGAAGCGGG
TGGCGGCGGACGGCACGTCGGCGGACCCGTGGGCGTGGCGCAAGTACGGGCAGAAGCCCATCAAGGGGTCGCCGTACCCG
CGCGGGTACTACCGGTGCAGCACCGACAAGGCGTGCGAGGCGCGGAAGATGGTGGAGCGCTGCCGCGACGACCCCAACTC
CTTCATCCTCACCTACACCGGCGGCGAGCACAGCCACCCCGCCCCCGCCCACCGCAACTCCCTGGCCGGCACCACTCGCA
ACAGGCAGCAGGCGCCGGAACCTGCTGCCGGACAGAGCGCTCCCGCCGCCAAAGCCAAGGAAGAGTCGTCGTCGGCGGCG
GCGGAGCCGAGCCCAGCGCAGTCGACGTCGGGCGGGATGTCCCCGACGACGCCCCTGCGCACGCCCTCCATGGAGGAGTA
CAACCAAGACTCAGAATTCGACGAGGCCGCCGGCGGCGCAAGTCAGCCGCCCATGGACGTCGAGAAGGACCGCGAGGATG
AGCTGCTGAAGATATTGGAGGGGTGCGTGCACGGCGGCGACTCCAGCATCGTCGTCGAGGAGACGTTCGTGGTCACGCCG
TGGGTCACGGCCCCCGGCGGCGCGGCCGGGTGGAGTTGACTCCGCCGTTACCGTCCGTACATTGCCATATATAGCAGCAT
GCTGTTCATTATAATCCTGGCTCGTTGCAGCA------GCAGCGGTAGCAGTAGAAACATAAGAAAAGAAAAGAAAAAAG
ATAGAGGTGGAAGAGAGCATCTGATCCATGCTACAACCCCAGTGCCAGCCGGCCAGTAGTTATTCGCCTAGTGTAATTAA
GTGCTAATTAGCTCTGGAGTAATACAGTAGCGAGTGTTCTTTGATGGCTTGATTAGAGTA----TACTGCATGTATAATT
AAACCAAACCCAAAGACAATGTTTTC--TTCTTCTTCTTCTTTCTTGACATGTTTGGGCCATTCAATGGCTGCCTAGCTT
TATCTAGAGGTTTTTGGTGCTACATTTGTGCGTGCACTAGCTAGACTGATCATCAT------GATACAGTCCCAGTTGCA
CCCAGGTGATGGAGCAAGAAGGGTG----AGATAAAGGGAGGACAGAAATGGAAGAAAGGAAGGGGAGTTGGTGCATGGT
GTGGGTGGCTCCCCTTGTCTCTTCCCTTTCACTGTGTGCCCAATTTGTGTGTGTAGTGGCTTTCTGGCTGCAGTGCAGTT
ATGCTTTTGCAGATCAGGACCATGTTGCTCCGGCCCAATGGATGGTACCTTTTGATTCTCGGATCTCGGTCCTATGTGTA
TTGGAACGTACTGCTGCTGCAACCAATCCTCGTTTACCCAATTTTCATGTTGCTCTTCTCAGTGAATTCAGTGTTTAGAT
GTTGGTTTCTTTGGATACTGATGAAGTACATGGCGTGTAAATCCTTATGAAAATATGGCCTTTTTCGGTTGAATGTGGAT
GTATA---------------------------------------------------------------------------
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>chr7A_542
AAG-----------------------------------------------------------------------------
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------------------------------------------------------------------AAATAAAAAAGAGA
AGAAAGAAAACT-TATGTTCACATGTGTTGCG----------CTCTTGCTCCTCCGGCAACGGTGAAAACTGAACACGTC
CCCACCGAAAAAAAGAGAAAAGGAAAGCAAGGGTGAAAACATATTCCTAGAATCGACCGTGCTCTGTCCCC-CCTGCCCT
CTCACTCTCTCACCCCTTTGACTTTGCCCCGAAAGTCAAGTGGGGACCGTGCCCCACCCCTCCAGAGACCACGAGGCCGG
CTCCCGATAAAACGCAGCCCCCTCGCCCCCCTCTCTCCTCCTTTTCAGACACCACGAGCGAGGCCGGATCCAATGCCCA-
----TCCCCACCACCACCATCTCTCTCCTCCCACCAACAGCGCCAACAATAAACTAGAACCAAAAGTCAGCGCCCCCCCT
CCTTTCCTTCCCTCCTCCATAGCCAGCAGGAACGAGCT----CGAGAGAG----GCCGACCATGGACAGCGACGCCGGGT
GCTACTACCTCGGCGGCGGGGGCGGCAACGACTGGGACCTCAACGCCGTCGTGCGCTTCGCCTGCCGCGGCCGCGTCCTC
CCGCCGCCGCCCTCGGACGACCCCTTCTCCTCCTTCCTCCCCCCGCCGCCGCCCGTCGTCGAGGACCACGGGATGCCTGA
CGCCGCGGCGTCGCTCCCTGATCCGCCCGTCGACGGGAACGGGGGCTCTGCTGCCGTCGACGAGCTCTCCATTGCCTTCT
TCGCGCCGTCGGCCGCGCTGCCGGCCTCGCCTCAGCCGCCGCCGCCGC------AGCAGCAGCAGCCAGCGCCGCCGGCA
GTCGAAGAAATGGTGCCGATGCAGCAAGACGTGGCGGTGCCGCCTCCGATGCTGCTGACCGCGGGCGCGCAAGGCCCCGT
CGGCGAAGGGTCGAGATCCAAGAGAAAGTACGTCCCGAACACT--GAATTTTTTCGAAATAAAATGTTGCTAGCTTATCG
TGTATGCCTGTGCTCACGCGTGCGTGTGGATAATCGGCGTCTGTGCAGGAAGAAGGTGGTGAAGAAGGTGGTGAAGCGGG
TGGCGGCGGACGGCACGTCGGCGGACCCGTGGGCGTGGCGCAAGTACGGGCAGAAGCCCATCAAGGGGTCGCCGTACCCG
CGCGGGTACTACCGGTGCAGCACCGACAAGGCGTGCGAGGCGCGGAAGATGGTGGAGCGCTGCCGCGACGACCCCAACTC
CTTCATCCTCACCTACACCGGCGGCGAGCACAGCCACCCCGCCCCCGCCCACCGCAACTCCCTGGCCGGCACCACGCGCA
ACAGGCAGCAGGCGCCGGAGCCTGCTGCCGGACAGAGCGCTCCCGCCGCCAGAGCCGAGGAGTCGGCGGCGGCGGCGGCG
GCGGAGCCGAGCCCAGGGCAGTCGACGTCGGGCGGGATGTCCCCGACGACGCCCCTGCGCACGCCCTCCATGGAGGAGTA
CAACCAAGACTCAGAATTCGACGAGGCCGCCGGCGGCGCAAGTCAGCCGCCCAAGGACGTCGAGAAGGACCGCGAGGACG
AGCTGGTGAAGATATTGGAGGCGTGCGTGCACGGCGGCGACCCCAGCATCCTCGTCGAGGAGACGTTCGTGGTCACGCCG
TGGGTCACGGCCCCCGGCGGCGCGGCCGGGTGGAGTTGACTCCGCCGCTACAGTCCGTACATTGCCATATATAGCAGCAT
GCTGTCAATTATAATCCTGGCTCGTTGCAGC------------GGTAGCAGTAGAAACATAAGAGAAAAGA--AAAAAAG
ATAGAGGTGGAAGAGAGCATCTGATCCGTGCTACAACCCCAGTGCCAGCAGGCCGGTAGTTATTCGCCTAGTGTAATTAA
GTGCTAATTAGCTCCGGAGTAATACAGTAGCGAGTGTTCTTTGATGGCTTGATTAGAGTACTTATACTGCATGTATAATT
AAACCAAACCCAAAGACAATGTTTCTTTTTCTTCTTCTTCTCTCTTGACATGTTTGGGCCATTCAATGGCTGCCTAGCTT
TATCTAGAGGTTTTTGGTGCTACATTTGTGCGTACACTAGCTAGACTGATCATGAT------GATGCAGCCCCAGTTGCA
CCCAGGTGATGGAGCAAGAAGGGCGAGATAGATAAAGGGAGGACAGAAATGGAAGAAGGGAAGGGGAGTTGGTGCATGCT
GTGGGTGGCTCCCCTTGTCTCTTCCCTTTCACTGTGTGCCCAATTTGTGTGTGTAGTGCCTTTCTGGCTGCAGTGCAGTT
ATGCTTTTGCAGATCAGGACCATGTTGCTCCGGCCCAATGGATGGTACCTTTTGATTCTCGGATCTCGGTCCTGTGTGTA
TTGGGACGTACTGCTGCTGCTACCAATCCTCATTTCCCTAATTTTCATGTTGCTCTTCTG-GTGAATTCAGTGTTTAGAC
GTTGGTTTCATTGGATACTGATGAAGTACATGGCGTGTAGATCCTTATGA------------------------------
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>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S------S----------S-SS--S---------------S---------------S-----------------------
----------------------------------S-----------S----------------SS--S------------
---------------------S---S-SSSS-SSSSSSSSSS--------------------------------------
-----------------------------------------------------------------------S----S---
----------------------------S-S-------------------------------------------------
-------------------------S-----------------------------------------------------S
SSSS----------------------------------------------------------------------------
-------------------------------------SSSSS--------------------------------------
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-----------------------------------------------------S--------------------------
-------------------------------S--------------------S---------------------------
-------------S--------------------S-------------------S-------------------------
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----------------------------------------------------------S---------------------
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----------------------------------S------------S--------------------------------
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--------------------------------SSSSSS----------------------------S-------------
-S------------------------------------------------------------------------------
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--------------------------S--------------------------------------S--------------
--------------------------------------------------------SSSSSS------------------
------------S--------------------------------------------------S----------------
-----------------S--------------------------------------------------------------
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----------------------------------------------------------------S-S-SS----------
----------------S---S-------------------S----S-------S--S-S----------S----------
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS
>forward_29
---------AATCCCCCTCTCTCCCTTCC---------------------------------------------------
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>reverse_2048
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-----------------------------------------------TGCCCATGGACGTCGAGAAG-------------
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>forward_1002
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----------------------CCAGCAAGAACGAACGAACC--------------------------------------
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>reverse_2278
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-------------------------------------CGCAGCGGTAGCAGTAGAAA-----------------------
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